Prupe.4G010000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012145
Physical Location & Seq
Forward (+)
498739 .. 500880
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G010000.1

Sequence Viewer

Length: 933 bp
ATGTTCGCTCATATGGCTTTGGTGTCTTTCCATCCATTCATCTCTCAGTTCTGCTACTGTAACTCAACCAATATCATCACACGTATTACCATTCATTCTGGTGCTGTCCTTCACAAAAAACTAAACAAAACAGCAGCTAATAATGTTGTTTCTGCTGAATTCCATCCACCAATTTGTAATGACGGTCAACCTATTATTGGCACAACAAGCTTCTTCTCTTCAAAATCAAGGCAGAGAGAAAGAGGGTTGTTGCTTGTGCCATTGAATGCCAAAAACTCTGGATTACCAGGAGATGAGGAGGATCCGCGAGCTCTCGAAACAGTGCTCAAACTCTACACTGCCATCAAGAACAAAAATATTCGCGAGTTGTCGGAGATATTAGGAGATGAATGCCAGTGTGTCTGCAACTTATTCTCAATTTTCCGACCCCTCCGAGGAAAGAAGCAAGTATTGGATTTTTTCTCATATCTAATCCGAAACTTGGGGAATAACATTGAATTTGTTGTAACACCGACATTGCACGATGGAATGAATGTCGGAATTCAGTGGAGCTTAGAGTGGAAAAAAACGCATGTGCCTCTGGGAAAGGGCTTTAGCTTCCATATTTGTCAAATCTACAAAGGCAAGGTGATGTTAAGAAATGTGGAGATGTTCATGGAACCACTCCTCCATATTGAACCCCTTAGACTGGTAAGCAAAGCAAGCACCTTGCGACTTCTTATTTCCACTTCAGAAATGTGTCCCTTATTGCTGTTTTCTTTGTCTTCTTATATATCACTTGTGCAGAAACTCATGGGAATTATGACGGCTGTACTGGATAAGATTGGGTTCAATGTAGTGTTCAAGGGCAAGGCAAACAGACTTGTGTTGGCTTTCCTCCTCCTGCTCATCAAGGCCGCCATTCTGATTTTACTGAAACTCGTCTTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.87

Weight (kDa)

9.53

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22370 AT4G22370 AT4G22370
fragaria_vesca FvH4_3g00940 FvH4_3g00940
malus_domestica MD10G1332100.v1.1
prunus_persica Prupe.4G010000_v2.0.a1 Prupe.4G010000_v2.0.a1
pyrus_communis pycom10g28150
rosa_chinensis RchiOBHm_Chr5g0001461
rosa_laevigata RLG00000030930
rosa_multiflora Rmu_sc0003749.1_g000012
rosa_roxburghii Rroxscaffold_1G00074930
rosa_rugosa Rorug04G0390400
rosa_samantha Rh5AG011300 Rh5BG013800 Rh5CG012300 Rh5DG011500
rosa_wichuraiana Rw5G001070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 307, 363
AciI CCGC 2 cut(s) 305, 897
AclWI GGATC 2 cut(s) 296, 309
AcsI RAATTY 3 cut(s) 158, 497, 540
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 4 cut(s) 197, 434, 481, 688
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 6 cut(s) 222, 265, 497, 677, 832, 844
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
AluBI AGCT 5 cut(s) 137, 210, 311, 552, 597
AluI AGCT 5 cut(s) 137, 210, 311, 552, 597
Alw21I GWGCWC 2 cut(s) 313, 327
AlwI GGATC 2 cut(s) 296, 309
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 158, 497, 540
AsuHPI GGTGA 1 cut(s) 640
BamHI GGATCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 2 cut(s) 313, 327
BbvI GCAGC 1 cut(s) 146
BccI CCATC 4 cut(s) 39, 171, 350, 518
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 1 cut(s) 288
BisI GCNGC 2 cut(s) 135, 897
BlsI GCNGC 2 cut(s) 136, 898
Bme1390I CCNGG 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 303, 660
BmrFI CCNGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 756
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 434, 481, 688
Bse1I ACTGG 3 cut(s) 394, 693, 819
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 31, 163
BseLI CCNNNNNNNGG 4 cut(s) 197, 434, 481, 688
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 3 cut(s) 394, 693, 819
BseRI GAGGAG 3 cut(s) 311, 656, 869
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 803
Bsh1236I CGCG 2 cut(s) 307, 363
BshFI GGCC 1 cut(s) 896
BsiHKAI GWGCWC 2 cut(s) 313, 327
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 4 cut(s) 197, 434, 481, 688
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 2 cut(s) 271, 395
BsnI GGCC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 313, 327
Bsp143I GATC 1 cut(s) 301
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 2 cut(s) 305, 897
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 2 cut(s) 307, 363
BspLI GGNNCC 2 cut(s) 303, 660
BspPI GGATC 2 cut(s) 296, 309
BsrDI GCAATG 1 cut(s) 515
BsrI ACTGG 3 cut(s) 394, 693, 819
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 3 cut(s) 59, 185, 322
Bst6I CTCTTC 1 cut(s) 223
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 309, 703
BstDEI CTNAG 3 cut(s) 45, 553, 683
BstF5I GGATG 2 cut(s) 31, 163
BstFNI CGCG 2 cut(s) 307, 363
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 14, 207, 702
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 2 cut(s) 307, 363
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 896
BtsCI GGATG 2 cut(s) 31, 163
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 4 cut(s) 327, 336, 401, 551
BtuMI TCGCGA 1 cut(s) 363
Cac8I GCNNGC 2 cut(s) 309, 703
Csp6I GTAC 1 cut(s) 812
CviAII CATG 3 cut(s) 572, 655, 793
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 3 cut(s) 45, 553, 683
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 311
EcoRI GAATTC 2 cut(s) 158, 540
EcoRII CCWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 313
FaeI CATG 3 cut(s) 575, 658, 796
FaqI GGGAC 1 cut(s) 726
FatI CATG 3 cut(s) 571, 654, 792
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 135, 897
FokI GGATG 2 cut(s) 18, 150
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 135, 897
GluI GCNGC 2 cut(s) 135, 897
HaeIII GGCC 1 cut(s) 896
Hin1II CATG 3 cut(s) 575, 658, 796
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 208
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 7 cut(s) 373, 425, 434, 476, 539, 733, 906
Hpy188III TCNNGA 4 cut(s) 279, 314, 346, 362
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 59, 185, 322
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 4 cut(s) 405, 520, 784, 928
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 207, 702
HpyF3I CTNAG 3 cut(s) 45, 553, 683
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 575, 658, 796
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 549
LpnPI CCDG 9 cut(s) 84, 264, 273, 300, 407, 566, 674, 800, 896
Lsp1109I GCAGC 1 cut(s) 146
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 59, 505
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 3 cut(s) 205, 210, 756
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 313, 327
MluCI AATT 6 cut(s) 158, 171, 417, 497, 540, 798
MmeI TCCRAC 3 cut(s) 351, 448, 517
MnlI CCTC 9 cut(s) 236, 289, 292, 428, 440, 588, 677, 887, 890
MseI TTAA 2 cut(s) 635, 931
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 2 cut(s) 271, 395
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 2 cut(s) 307, 363
MwoI GCNNNNNNNGC 3 cut(s) 14, 207, 702
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 575, 658, 796
NlaIV GGNNCC 2 cut(s) 303, 660
NruI TCGCGA 1 cut(s) 363
NspI RCATGY 1 cut(s) 575
PctI GAATGC 2 cut(s) 271, 395
PkrI GCNGC 2 cut(s) 136, 898
Ppu21I YACGTR 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 303, 660
PsuI RGATCY 1 cut(s) 301
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 635, 931
SatI GCNGC 2 cut(s) 135, 897
Sau3AI GATC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 2 cut(s) 313, 327
SetI ASST 9 cut(s) 85, 139, 193, 212, 313, 554, 599, 630, 710
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 6 cut(s) 158, 171, 417, 497, 540, 798
SsiI CCGC 2 cut(s) 305, 897
SspI AATATT 1 cut(s) 358
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 3 cut(s) 59, 185, 322
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 315
TasI AATT 6 cut(s) 158, 171, 417, 497, 540, 798
TatI WGTACW 1 cut(s) 811
TauI GCSGC 1 cut(s) 899
Tru1I TTAA 2 cut(s) 635, 931
Tru9I TTAA 2 cut(s) 635, 931
TscAI CASTG 4 cut(s) 327, 343, 401, 551
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 5 cut(s) 28, 83, 402, 545, 643
TspRI CASTG 4 cut(s) 327, 343, 401, 551
XapI RAATTY 3 cut(s) 158, 497, 540
XceI RCATGY 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.