Rh5CG012300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012145
Physical Location & Seq
Forward (+)
767984 .. 769319
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG012300.1

Sequence Viewer

Length: 594 bp
ATGGAGCCGATATTCTGTGCTAAAAACTCACCAGAAGGTGCAGGCGGACAAGATCAGCAGGATCCACGAACTCTCGAAAAACTGCTGAAACTGTACGAAGCCATGAAGAACAAAGATGTTCTCGAGTTATCGGAGGTCATAGCAGATGAACCCGTGTGTGCAGGCAACTTATCCTCAATCATCCAACCCCTTCGAGGAAAAAAGAAAGTGGTGGATTTTTTCCTAAATCTAATCCGACACCTAGGAACTGAAATTGACTTTTTTGTAAAACCAACATTACATGATGGGATGAAAGTTGGTGTTGAGTGGGCTTTAGGGTGGAGCAAAACGCATACGCCTTTTGGAAAGGGTTTTAGCTACCATATATCCCACCACTACAAGGGGAAGGTGGTGATAAAAAATGCAGAGATGTTCACGGAACCACTCCGGCATATTCCTTCCAGGATGAAAATGATGGAAATTATGACTGCTTTAACGGAGAAGATGGGTTCCAATGCAATATTCAAGGGTTGGGGAAGCAAAGTAGCATTGAGTATCCTCCTTGTGTTCATCATAGCTGCATTTCTAATCACTTTGATGCTCATCTCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.11

Weight (kDa)

9.0

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22370 AT4G22370 AT4G22370
fragaria_vesca FvH4_3g00940 FvH4_3g00940
malus_domestica MD10G1332100.v1.1
prunus_persica Prupe.4G010000_v2.0.a1 Prupe.4G010000_v2.0.a1
pyrus_communis pycom10g28150
rosa_chinensis RchiOBHm_Chr5g0001461
rosa_laevigata RLG00000030930
rosa_multiflora Rmu_sc0003749.1_g000012
rosa_roxburghii Rroxscaffold_1G00074930
rosa_rugosa Rorug04G0390400
rosa_samantha Rh5AG011300 Rh5BG013800 Rh5CG012300 Rh5DG011500
rosa_wichuraiana Rw5G001070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AclWI GGATC 2 cut(s) 56, 69
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 194, 379
AgsI TTSAA 1 cut(s) 505
AjnI CCWGG 1 cut(s) 440
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 2 cut(s) 357, 557
AluI AGCT 2 cut(s) 357, 557
AlwI GGATC 2 cut(s) 56, 69
Ama87I CYCGRG 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 557
AspA2I CCTAGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 21, 403
AvaI CYCGRG 1 cut(s) 122
AvrII CCTAGG 1 cut(s) 241
BamHI GGATCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 544
BccI CCATC 3 cut(s) 278, 448, 478
BciT130I CCWGG 1 cut(s) 442
BciVI GTATCC 1 cut(s) 545
BfaI CTAG 1 cut(s) 242
BfuI GTATCC 1 cut(s) 545
BisI GCNGC 1 cut(s) 558
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 122
BmiI GGNNCC 4 cut(s) 6, 63, 420, 490
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 379
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 3 cut(s) 180, 294, 450
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 2 cut(s) 194, 379
BseXI GCAGC 1 cut(s) 544
BsgI GTGCAG 2 cut(s) 60, 180
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 427
BslI CCNNNNNNNGG 2 cut(s) 194, 379
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 2 cut(s) 52, 61
BspACI CCGC 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 6, 63, 420, 490
BspPI GGATC 2 cut(s) 56, 69
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 52, 61
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 43, 163
BstF5I GGATG 3 cut(s) 180, 294, 450
BstKTI GATC 2 cut(s) 55, 64
BstMBI GATC 2 cut(s) 52, 61
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuI GTATCC 1 cut(s) 545
BtsCI GGATG 3 cut(s) 180, 294, 450
Cac8I GCNNGC 2 cut(s) 43, 163
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 103, 281
CviJI RGCY 5 cut(s) 7, 101, 311, 357, 557
CviKI_1 RGCY 5 cut(s) 7, 101, 311, 357, 557
CviQI GTAC 1 cut(s) 94
DpnI GATC 2 cut(s) 54, 63
DpnII GATC 2 cut(s) 52, 61
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 106, 284
FaiI YATR 9 cut(s) 104, 140, 282, 333, 363, 365, 432, 464, 554
FatI CATG 2 cut(s) 102, 280
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 3 cut(s) 167, 301, 457
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 558
HapII CCGG 1 cut(s) 427
Hin1II CATG 2 cut(s) 106, 284
HpaII CCGG 1 cut(s) 427
HphI GGTGA 2 cut(s) 21, 403
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 133, 236
Hpy188III TCNNGA 2 cut(s) 74, 122
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 4 cut(s) 29, 200, 379, 447
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 41, 161, 404, 497, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
Hsp92II CATG 2 cut(s) 106, 284
Kzo9I GATC 2 cut(s) 52, 61
LmnI GCTCC 2 cut(s) 4, 321
LpnPI CCDG 7 cut(s) 27, 44, 45, 147, 427, 440, 454
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 567
MaeI CTAG 1 cut(s) 242
MalI GATC 2 cut(s) 54, 63
MboI GATC 2 cut(s) 52, 61
MboII GAAGA 2 cut(s) 118, 493
MflI RGATCY 1 cut(s) 61
MluCI AATT 2 cut(s) 252, 459
MmeI TCCRAC 2 cut(s) 208, 259
MnlI CCTC 4 cut(s) 127, 184, 188, 548
MseI TTAA 2 cut(s) 473, 592
MslI CAYNNNNRTG 1 cut(s) 575
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 442
MvaI CCWGG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 586
NdeII GATC 2 cut(s) 52, 61
NlaIII CATG 2 cut(s) 106, 284
NlaIV GGNNCC 4 cut(s) 6, 63, 420, 490
PaeR7I CTCGAG 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 4 cut(s) 6, 63, 420, 490
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 2 cut(s) 473, 592
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 2 cut(s) 52, 61
ScrFI CCNGG 1 cut(s) 442
SetI ASST 6 cut(s) 40, 138, 243, 359, 390, 559
SfaNI GCATC 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 252, 459
SsiI CCGC 1 cut(s) 45
SspI AATATT 1 cut(s) 501
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 75, 123, 193
TasI AATT 2 cut(s) 252, 459
Tru1I TTAA 2 cut(s) 473, 592
Tru9I TTAA 2 cut(s) 473, 592
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 5 cut(s) 119, 162, 305, 461, 538
TspGWI ACGGA 2 cut(s) 431, 491
XhoI CTCGAG 1 cut(s) 122
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.