FvH4_3g00940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012145
Physical Location & Seq
Forward (+)
475971 .. 477503
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00940.t1

Sequence Viewer

Length: 831 bp
ATGTCTTATGGCATTGAGGTCTTGCAATATTACAACCTTGATTCACTGATCATGGCTCTTGTTTCCTTCCCAATCATTACCAATAACATAATATACAGAAATACCATGCAAATTTCACATGTTCATCCTGCCTATACCATCCATGAAATTTCTAAGAAAATTAAAGCTAATAATGCCTCTGGTAATTTTCATCCGCCATTTTCAGGCCAACCTTTGATTCAAAGAAGGCACAAAGAGTTGTTGGTGGTGCCGTTATTCTGTGCTAAAAACTCACCGGAAGGTGAAGGTGGAGAAGATAAGCAGGATCCACGAACTCTCGAAAAATTGCTGAAACTTTACAATGCCATGAAGAATAAAAATCTTCTCGAGTTATCGGAGGTTGTAGCAGATGAACCCGAGTGTGTAGGCAACCTATCCCCAATCATCCAAACCCTTCGAGGGAAGAAGAAAGTGGTGGATTTTCTCCTAAATCTAATCCAACACCTAGGAAGTGGAATTGAATTTATTATAAAACCAACATTCCATGATGGGATGAAGGTCGGTCTTCAATGGGCCTTAGAGTGGGATAAAACACATACGCCTTTTGGAAAGGGTTTCGGCTTCCATATATCCCACCACTATAAGGGGAAGCTGGTAATAAAAAATGCAGAGATGTTCATCGAACCACTCCTGCATTTTCCTTACAGAATGAGAATGAAAGGAATTATGACTGCTTTAACCGAGAAGATGGGTTCCAGTGCAATGTTCAAGGGTGGGGCGAGCAAAGCAGTATTGAGTATCCTCCTTGTCATCACTGCTGCATTTCTAATCTCTTTGCTCACCGCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.02

Weight (kDa)

9.33

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22370 AT4G22370 AT4G22370
fragaria_vesca FvH4_3g00940 FvH4_3g00940
malus_domestica MD10G1332100.v1.1
prunus_persica Prupe.4G010000_v2.0.a1 Prupe.4G010000_v2.0.a1
pyrus_communis pycom10g28150
rosa_chinensis RchiOBHm_Chr5g0001461
rosa_laevigata RLG00000030930
rosa_multiflora Rmu_sc0003749.1_g000012
rosa_roxburghii Rroxscaffold_1G00074930
rosa_rugosa Rorug04G0390400
rosa_samantha Rh5AG011300 Rh5BG013800 Rh5CG012300 Rh5DG011500
rosa_wichuraiana Rw5G001070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 247
AccII CGCG 1 cut(s) 824
AciI CCGC 2 cut(s) 194, 822
AclWI GGATC 2 cut(s) 299, 312
AcsI RAATTY 3 cut(s) 111, 147, 500
AfiI CCNNNNNNNGG 4 cut(s) 203, 438, 561, 622
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 4 cut(s) 221, 500, 548, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 167, 631
AluI AGCT 2 cut(s) 167, 631
AlwI GGATC 2 cut(s) 299, 312
Ama87I CYCGRG 2 cut(s) 365, 395
AoxI GGCC 2 cut(s) 205, 552
ApeKI GCWGC 1 cut(s) 797
ApoI RAATTY 3 cut(s) 111, 147, 500
AspA2I CCTAGG 1 cut(s) 484
AspLEI GCGC 1 cut(s) 826
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 3 cut(s) 264, 293, 811
AvaI CYCGRG 2 cut(s) 365, 395
AvrII CCTAGG 1 cut(s) 484
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 784
BccI CCATC 3 cut(s) 146, 521, 721
BceAI ACGGC 1 cut(s) 235
BciVI GTATCC 1 cut(s) 788
BclI TGATCA 1 cut(s) 48
BfaI CTAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 788
BisI GCNGC 1 cut(s) 798
BlnI CCTAGG 1 cut(s) 484
BlsI GCNGC 1 cut(s) 799
BmeT110I CYCGRG 2 cut(s) 365, 395
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 3 cut(s) 249, 306, 733
BpiI GAAGAC 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 484
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 438, 561, 622
Bse1I ACTGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 747
Bse8I GATNNNNATC 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 5 cut(s) 124, 138, 190, 423, 537
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 4 cut(s) 203, 438, 561, 622
BseMI GCAATG 1 cut(s) 747
BseNI ACTGG 1 cut(s) 735
BseXI GCAGC 1 cut(s) 784
Bsh1236I CGCG 1 cut(s) 824
BshFI GGCC 2 cut(s) 207, 554
BshNI GGYRCC 1 cut(s) 247
BsiHKCI CYCGRG 2 cut(s) 365, 395
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 203, 438, 561, 622
BsnI GGCC 2 cut(s) 207, 554
BsoBI CYCGRG 2 cut(s) 365, 395
Bsp143I GATC 2 cut(s) 48, 304
BspACI CCGC 2 cut(s) 194, 822
BspANI GGCC 2 cut(s) 207, 554
BspFNI CGCG 1 cut(s) 824
BspLI GGNNCC 3 cut(s) 249, 306, 733
BspPI GGATC 2 cut(s) 299, 312
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 1 cut(s) 735
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 2 cut(s) 48, 304
BssT1I CCWWGG 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 760
BstDEI CTNAG 2 cut(s) 153, 556
BstF5I GGATG 5 cut(s) 124, 138, 190, 423, 537
BstFNI CGCG 1 cut(s) 824
BstHHI GCGC 1 cut(s) 826
BstKTI GATC 2 cut(s) 51, 307
BstMBI GATC 2 cut(s) 48, 304
BstMWI GCNNNNNNNGC 3 cut(s) 173, 764, 823
BstNSI RCATGY 1 cut(s) 122
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 2 cut(s) 207, 554
BtsCI GGATG 5 cut(s) 124, 138, 190, 423, 537
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 3 cut(s) 44, 742, 792
Cac8I GCNNGC 1 cut(s) 760
CfoI GCGC 1 cut(s) 826
Cfr13I GGNCC 1 cut(s) 552
CviAII CATG 6 cut(s) 52, 106, 119, 143, 346, 524
CviJI RGCY 6 cut(s) 56, 167, 207, 554, 600, 631
CviKI_1 RGCY 6 cut(s) 56, 167, 207, 554, 600, 631
DdeI CTNAG 2 cut(s) 153, 556
DpnI GATC 2 cut(s) 50, 306
DpnII GATC 2 cut(s) 48, 304
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 484
Eco88I CYCGRG 2 cut(s) 365, 395
EcoT14I CCWWGG 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 6 cut(s) 55, 109, 122, 146, 349, 527
FatI CATG 6 cut(s) 51, 105, 118, 142, 345, 523
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 798
FokI GGATG 5 cut(s) 111, 125, 177, 410, 544
Fsp4HI GCNGC 1 cut(s) 798
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 825
GluI GCNGC 1 cut(s) 798
HaeIII GGCC 2 cut(s) 207, 554
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 826
Hin1II CATG 6 cut(s) 55, 109, 122, 146, 349, 527
Hin6I GCGC 1 cut(s) 824
HinP1I GCGC 1 cut(s) 824
HinfI GANTC 2 cut(s) 41, 217
HpaII CCGG 1 cut(s) 275
HphI GGTGA 3 cut(s) 264, 293, 811
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 317, 365
HpyAV CCTTC 6 cut(s) 76, 219, 272, 278, 443, 529
HpyCH4V TGCA 6 cut(s) 25, 109, 647, 673, 740, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 764, 823
HpyF3I CTNAG 2 cut(s) 153, 556
Hsp92II CATG 6 cut(s) 55, 109, 122, 146, 349, 527
HspAI GCGC 1 cut(s) 824
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 304
LpnPI CCDG 8 cut(s) 141, 165, 189, 287, 288, 617, 683, 748
Lsp1109I GCAGC 1 cut(s) 784
MaeI CTAG 1 cut(s) 485
MalI GATC 2 cut(s) 50, 306
MboI GATC 2 cut(s) 48, 304
MboII GAAGA 7 cut(s) 305, 353, 361, 454, 457, 536, 736
MflI RGATCY 1 cut(s) 304
MluCI AATT 8 cut(s) 111, 147, 159, 184, 323, 495, 500, 702
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 5 cut(s) 10, 187, 370, 431, 791
MseI TTAA 3 cut(s) 162, 716, 829
MspI CCGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 3 cut(s) 173, 764, 823
NdeII GATC 2 cut(s) 48, 304
NlaIII CATG 6 cut(s) 55, 109, 122, 146, 349, 527
NlaIV GGNNCC 3 cut(s) 249, 306, 733
NspI RCATGY 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 365
PciI ACATGT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 41, 217
PkrI GCNGC 1 cut(s) 799
PscI ACATGT 1 cut(s) 118
PsiI TTATAA 1 cut(s) 509
PspN4I GGNNCC 3 cut(s) 249, 306, 733
PspPI GGNCC 1 cut(s) 552
PsuI RGATCY 1 cut(s) 304
SaqAI TTAA 3 cut(s) 162, 716, 829
SatI GCNGC 1 cut(s) 798
Sau3AI GATC 2 cut(s) 48, 304
Sau96I GGNCC 1 cut(s) 552
Sfr274I CTCGAG 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 8 cut(s) 111, 147, 159, 184, 323, 495, 500, 702
SsiI CCGC 2 cut(s) 194, 822
SspI AATATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 484
TaqI TCGA 4 cut(s) 318, 366, 436, 660
TaqII GACCGA 1 cut(s) 530
TasI AATT 8 cut(s) 111, 147, 159, 184, 323, 495, 500, 702
TfiI GAWTC 2 cut(s) 41, 217
Tru1I TTAA 3 cut(s) 162, 716, 829
Tru9I TTAA 3 cut(s) 162, 716, 829
TscAI CASTG 3 cut(s) 51, 742, 799
TseI GCWGC 1 cut(s) 797
TspDTI ATGAA 8 cut(s) 113, 159, 179, 362, 405, 548, 646, 710
TspRI CASTG 3 cut(s) 51, 742, 799
XapI RAATTY 3 cut(s) 111, 147, 500
XceI RCATGY 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 365
XmaJI CCTAGG 1 cut(s) 484
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.