Rh5DG011500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012145
Physical Location & Seq
Forward (+)
780022 .. 781513
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG011500.1

Sequence Viewer

Length: 732 bp
ATGCAAATTTCACATGTTAATCCTGTCTATACCATCCATAAAAATTCTAAGAAAATTACAGCTGACAATGCCTTTGGTAATTTTCATCCACCATTTTCAGGCCAACCTTTGATTCAAAGAAGGCACAGAGAGTTGTTGATGGTGCCGATATTCTGTGCTAAAAACTCACCAGAAGGTGCAGGCGGAGAAGATCAGCAGGATCCACGAGCTCTCGAAAAACTGCTGAAACTTTACGAAGCCATGAAGAACAAAGACGTTCTCGAGTTATCGGAGGTCATAGCAGATGAACCCGTGTGTGCAGGCAACTTATCCTCAATCATCCAACCCCTTCGAGGAAAAAAGAAAGTGGTGGATTTTTTCCTAAATCTAATCCGACACCTAGGAACTGAAATTGACTTTATTATAAAACCAACATTGCATGATGGGATGAAAGTTGGTGTTGAGTGGGCTTTAGGGTGGAGCAAAACGCATACGCCTTTTGGAAAGGGTTTTAGCTACCATATATCCCACCACTACAAGGGGAAGGTGATGATAAAAAATGCAGAGATGTTCACGGAACCACTCCGGCATATTCCTTCCAGGATGAAAATGATGGAAATTATGACTGCTTTAACGGAGAAGATGGGTTCCAATGCAATATTCAAGGGTGGGGGAAGCAAAGTAGTATTGAGTATCCTCCTTGTGTTCATCATTGCTGCATTTCTAATCACTTTGATGCTCATCTCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.28

Weight (kDa)

9.43

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22370 AT4G22370 AT4G22370
fragaria_vesca FvH4_3g00940 FvH4_3g00940
malus_domestica MD10G1332100.v1.1
prunus_persica Prupe.4G010000_v2.0.a1 Prupe.4G010000_v2.0.a1
pyrus_communis pycom10g28150
rosa_chinensis RchiOBHm_Chr5g0001461
rosa_laevigata RLG00000030930
rosa_multiflora Rmu_sc0003749.1_g000012
rosa_roxburghii Rroxscaffold_1G00074930
rosa_rugosa Rorug04G0390400
rosa_samantha Rh5AG011300 Rh5BG013800 Rh5CG012300 Rh5DG011500
rosa_wichuraiana Rw5G001070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 194, 207
AcsI RAATTY 2 cut(s) 6, 43
AfiI CCNNNNNNNGG 3 cut(s) 98, 332, 517
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 2 cut(s) 116, 643
AjnI CCWGG 1 cut(s) 578
AjuI GAANNNNNNNTTGG 4 cut(s) 96, 128, 623, 655
AluBI AGCT 3 cut(s) 62, 209, 495
AluI AGCT 3 cut(s) 62, 209, 495
Alw21I GWGCWC 1 cut(s) 211
AlwI GGATC 2 cut(s) 194, 207
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 2 cut(s) 6, 43
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspA2I CCTAGG 1 cut(s) 379
AsuHPI GGTGA 2 cut(s) 159, 538
AvaI CYCGRG 1 cut(s) 260
AvrII CCTAGG 1 cut(s) 379
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 682
BccI CCATC 5 cut(s) 41, 133, 416, 586, 616
BciT130I CCWGG 1 cut(s) 580
BciVI GTATCC 1 cut(s) 683
BfaI CTAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 1 cut(s) 696
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 4 cut(s) 144, 201, 558, 628
BmrFI CCNGG 1 cut(s) 580
BmsI GCATC 1 cut(s) 705
BsaBI GATNNNNATC 1 cut(s) 719
BsaJI CCNNGG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 332, 517
Bse3DI GCAATG 2 cut(s) 413, 690
Bse8I GATNNNNATC 1 cut(s) 719
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 5 cut(s) 33, 85, 318, 432, 588
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 3 cut(s) 98, 332, 517
BseMI GCAATG 2 cut(s) 413, 690
BseXI GCAGC 1 cut(s) 682
BsgI GTGCAG 2 cut(s) 198, 318
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 565
BslI CCNNNNNNNGG 3 cut(s) 98, 332, 517
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 190, 199
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 144, 201, 558, 628
BspPI GGATC 2 cut(s) 194, 207
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 2 cut(s) 413, 690
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 2 cut(s) 190, 199
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 379
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 181, 301
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 5 cut(s) 33, 85, 318, 432, 588
BstKTI GATC 2 cut(s) 193, 202
BstMBI GATC 2 cut(s) 190, 199
BstMWI GCNNNNNNNGC 2 cut(s) 68, 724
BstNI CCWGG 1 cut(s) 580
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 682
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 5 cut(s) 33, 85, 318, 432, 588
Cac8I GCNNGC 2 cut(s) 181, 301
CviAII CATG 3 cut(s) 14, 241, 419
CviJI RGCY 6 cut(s) 62, 102, 209, 239, 449, 495
CviKI_1 RGCY 6 cut(s) 62, 102, 209, 239, 449, 495
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 192, 201
DpnII GATC 2 cut(s) 190, 199
EciI GGCGGA 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 3 cut(s) 17, 244, 422
FatI CATG 3 cut(s) 13, 240, 418
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 5 cut(s) 20, 72, 305, 439, 595
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 1 cut(s) 380
GluI GCNGC 1 cut(s) 696
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 565
Hin1II CATG 3 cut(s) 17, 244, 422
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 565
HphI GGTGA 2 cut(s) 159, 538
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 2 cut(s) 271, 374
Hpy188III TCNNGA 2 cut(s) 212, 260
Hpy8I GTNNAC 1 cut(s) 552
HpyAV CCTTC 5 cut(s) 114, 167, 338, 517, 585
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 7 cut(s) 4, 179, 299, 418, 542, 635, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 724
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 17, 244, 422
Kzo9I GATC 2 cut(s) 190, 199
LmnI GCTCC 1 cut(s) 459
LpnPI CCDG 9 cut(s) 36, 84, 165, 182, 183, 285, 565, 578, 592
Lsp1109I GCAGC 1 cut(s) 682
LweI GCATC 1 cut(s) 705
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 255
MalI GATC 2 cut(s) 192, 201
MboI GATC 2 cut(s) 190, 199
MboII GAAGA 3 cut(s) 200, 256, 631
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 6 cut(s) 6, 43, 54, 79, 390, 597
MmeI TCCRAC 2 cut(s) 346, 397
MnlI CCTC 4 cut(s) 265, 322, 326, 686
MseI TTAA 3 cut(s) 18, 611, 730
MslI CAYNNNNRTG 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 580
MvaI CCWGG 1 cut(s) 580
MwoI GCNNNNNNNGC 2 cut(s) 68, 724
NdeII GATC 2 cut(s) 190, 199
NlaIII CATG 3 cut(s) 17, 244, 422
NlaIV GGNNCC 4 cut(s) 144, 201, 558, 628
NspI RCATGY 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 260
PciI ACATGT 1 cut(s) 13
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 578
PkrI GCNGC 1 cut(s) 697
PscI ACATGT 1 cut(s) 13
PsiI TTATAA 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 4 cut(s) 144, 201, 558, 628
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 713
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 18, 611, 730
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 2 cut(s) 190, 199
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 64, 109, 178, 211, 258, 276, 381, 497, 528
SfaNI GCATC 1 cut(s) 705
Sfr274I CTCGAG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 6 cut(s) 6, 43, 54, 79, 390, 597
SsiI CCGC 1 cut(s) 183
SspI AATATT 1 cut(s) 639
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 379
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 213, 261, 331
TasI AATT 6 cut(s) 6, 43, 54, 79, 390, 597
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 3 cut(s) 18, 611, 730
Tru9I TTAA 3 cut(s) 18, 611, 730
TseI GCWGC 1 cut(s) 695
TspDTI ATGAA 6 cut(s) 74, 257, 300, 443, 599, 676
TspGWI ACGGA 2 cut(s) 569, 629
XapI RAATTY 2 cut(s) 6, 43
XceI RCATGY 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 260
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.