Rh5BG013800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012145
Physical Location & Seq
Forward (+)
1036642 .. 1038659
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG013800.1

Sequence Viewer

Length: 786 bp
ATGGCTTTTGTGTCCTTCCCAATCATTACCAATAACATAATATACAGGAATACCATGCAAATTTCACATGTTAATCCTGTCTATACCATCCATAAAAATTCTAAGAAAATTACAGCTAACAATGCCTTTGGTAAATTTCATCCACCATTTTCAGGCCAACCTTTGATTCAAAGAAGGCACAGAGAGTTGTTGATGGTGCCGATATTCTGTGCTAAAAACTCACCAGAAGGTGCAGGCGGAGAAGATCAGCAGGATCCACGAGCTCTCGAAAAACTGCTGAAACTGTACGAAGCCATGAAGAACAAAGATGTTCTCGAGTTATCGGAGGTCATAGCAGATGAACCCGTGTGTGCAGGCAACTTATCCTCAATCATCCAACCCCTTCGAGGAAAAAAGAAAGTGGTGGATTTTTTCCTAAATCTAATCCGACACCTAGGAACTGAAATTGACTTTATTGTAAAACCGACATTGCATGATGGGATGAAAGTTGGTGTTGAGTGGGGTTTAGGGTGGAGCAAAACGCATACGCCTTTAGGAAAGGGTTTTAGCTACCATATATCCCACCACTACAAGGGGAAGGTGATGATAAAAAATGCAGAGATGTTGACGGAACCACTCCGGCATATTCCTTCCAGGATGAAAATGATGGAAATTATGACTGCTTTAACGGAGAAGATGGGCTCCAATGCAATATTGAAGGGTGGGGGAAGCAAAGTAGTATTGAGTATCCTCCTTGTGTTCATCATTGCTGCATTTCTAATCACTTTGATGCTCATCTCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.26

Weight (kDa)

9.63

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22370 AT4G22370 AT4G22370
fragaria_vesca FvH4_3g00940 FvH4_3g00940
malus_domestica MD10G1332100.v1.1
prunus_persica Prupe.4G010000_v2.0.a1 Prupe.4G010000_v2.0.a1
pyrus_communis pycom10g28150
rosa_chinensis RchiOBHm_Chr5g0001461
rosa_laevigata RLG00000030930
rosa_multiflora Rmu_sc0003749.1_g000012
rosa_roxburghii Rroxscaffold_1G00074930
rosa_rugosa Rorug04G0390400
rosa_samantha Rh5AG011300 Rh5BG013800 Rh5CG012300 Rh5DG011500
rosa_wichuraiana Rw5G001070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AciI CCGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 248, 261
AcsI RAATTY 3 cut(s) 60, 97, 134
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 152, 386, 571
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 170, 697
AjnI CCWGG 1 cut(s) 632
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 3 cut(s) 116, 263, 549
AluI AGCT 3 cut(s) 116, 263, 549
Alw21I GWGCWC 1 cut(s) 265
AlwI GGATC 2 cut(s) 248, 261
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 3 cut(s) 60, 97, 134
AspA2I CCTAGG 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 213, 592
AvaI CYCGRG 1 cut(s) 314
AvrII CCTAGG 1 cut(s) 433
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 2 cut(s) 265, 683
BauI CACGAG 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 736
BccI CCATC 5 cut(s) 95, 187, 470, 640, 670
BciT130I CCWGG 1 cut(s) 634
BciVI GTATCC 1 cut(s) 737
BfaI CTAG 1 cut(s) 434
BfuI GTATCC 1 cut(s) 737
BisI GCNGC 1 cut(s) 750
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 1 cut(s) 751
Bme1390I CCNGG 1 cut(s) 634
BmeT110I CYCGRG 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 198, 255, 612, 682
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 1 cut(s) 759
BsaBI GATNNNNATC 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 386, 571
Bse3DI GCAATG 2 cut(s) 467, 744
Bse8I GATNNNNATC 1 cut(s) 773
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 5 cut(s) 87, 139, 372, 486, 642
BseJI GATNNNNATC 1 cut(s) 773
BseLI CCNNNNNNNGG 3 cut(s) 152, 386, 571
BseMI GCAATG 2 cut(s) 467, 744
BseXI GCAGC 1 cut(s) 736
BsgI GTGCAG 2 cut(s) 252, 372
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 619
BslI CCNNNNNNNGG 3 cut(s) 152, 386, 571
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 265, 683
Bsp143I GATC 2 cut(s) 244, 253
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 4 cut(s) 198, 255, 612, 682
BspPI GGATC 2 cut(s) 248, 261
BspT107I GGYRCC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 467, 744
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 2 cut(s) 244, 253
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 235, 355
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 5 cut(s) 87, 139, 372, 486, 642
BstKTI GATC 2 cut(s) 247, 256
BstMBI GATC 2 cut(s) 244, 253
BstMWI GCNNNNNNNGC 2 cut(s) 122, 778
BstNI CCWGG 1 cut(s) 634
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 736
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 5 cut(s) 87, 139, 372, 486, 642
Cac8I GCNNGC 2 cut(s) 235, 355
Csp6I GTAC 1 cut(s) 286
CviAII CATG 4 cut(s) 55, 68, 295, 473
CviJI RGCY 7 cut(s) 5, 116, 156, 263, 293, 549, 681
CviKI_1 RGCY 7 cut(s) 5, 116, 156, 263, 293, 549, 681
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 246, 255
DpnII GATC 2 cut(s) 244, 253
EciI GGCGGA 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 265, 683
Eco53kI GAGCTC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 433
EcoT38I GRGCYC 2 cut(s) 265, 683
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 4 cut(s) 58, 71, 298, 476
FatI CATG 4 cut(s) 54, 67, 294, 472
Fnu4HI GCNGC 1 cut(s) 750
FokI GGATG 5 cut(s) 74, 126, 359, 493, 649
FriOI GRGCYC 2 cut(s) 265, 683
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 750
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 619
Hin1II CATG 4 cut(s) 58, 71, 298, 476
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 1 cut(s) 166
HpaII CCGG 1 cut(s) 619
HphI GGTGA 2 cut(s) 213, 592
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 2 cut(s) 325, 428
Hpy188III TCNNGA 2 cut(s) 266, 314
Hpy8I GTNNAC 1 cut(s) 606
HpyAV CCTTC 7 cut(s) 25, 168, 221, 392, 571, 639, 691
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 7 cut(s) 58, 233, 353, 472, 596, 689, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 778
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 4 cut(s) 58, 71, 298, 476
Kzo9I GATC 2 cut(s) 244, 253
LmnI GCTCC 2 cut(s) 513, 686
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 759
MaeI CTAG 1 cut(s) 434
MalI GATC 2 cut(s) 246, 255
MboI GATC 2 cut(s) 244, 253
MboII GAAGA 3 cut(s) 254, 310, 685
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 265, 683
MluCI AATT 6 cut(s) 60, 97, 108, 134, 444, 651
MmeI TCCRAC 2 cut(s) 400, 451
MnlI CCTC 4 cut(s) 319, 376, 380, 740
MseI TTAA 3 cut(s) 72, 665, 784
MslI CAYNNNNRTG 1 cut(s) 767
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 2 cut(s) 122, 778
NdeII GATC 2 cut(s) 244, 253
NlaIII CATG 4 cut(s) 58, 71, 298, 476
NlaIV GGNNCC 4 cut(s) 198, 255, 612, 682
NspI RCATGY 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 314
PciI ACATGT 1 cut(s) 67
PfeI GAWTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 632
PkrI GCNGC 1 cut(s) 751
PscI ACATGT 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 4 cut(s) 198, 255, 612, 682
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 767
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 3 cut(s) 72, 665, 784
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 2 cut(s) 244, 253
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 2 cut(s) 265, 683
SetI ASST 8 cut(s) 118, 163, 232, 265, 330, 435, 551, 582
SfaNI GCATC 1 cut(s) 759
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 6 cut(s) 60, 97, 108, 134, 444, 651
SsiI CCGC 1 cut(s) 237
SspI AATATT 1 cut(s) 693
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 267, 315, 385
TasI AATT 6 cut(s) 60, 97, 108, 134, 444, 651
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 3 cut(s) 72, 665, 784
Tru9I TTAA 3 cut(s) 72, 665, 784
TseI GCWGC 1 cut(s) 749
TspDTI ATGAA 6 cut(s) 128, 311, 354, 497, 653, 730
TspGWI ACGGA 2 cut(s) 623, 683
XapI RAATTY 3 cut(s) 60, 97, 134
XceI RCATGY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 433
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.