AT4G24090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014055
Physical Location & Seq
Forward (+)
12512665 .. 12514657
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24090.1

Sequence Viewer

Length: 927 bp
ATGCAATCTTTATCTCTGCAATCGCTTCCATGGAAACCAAATTCAGTGACTTTACCTGAAATTAATCTTTTGAATCCCAAGCAATTGACTGCCTCGAGTTCTCAGTATCGTAGAACTCGAAACTGGAGAATTAGAAGTTCGTCGGAAGATAATGTAGCAATTTCGAGTGACGGCGGAGATTTGAAGAATTCTCTGTCCGGTATTGTGGGAAATCAAGTGGAGGAGCTATTGAGCAGAGAAGAGAACAAAGGTTTGCTTGATGGTCTGGAAAAAGCTTCGTTGAGAGTGGAGATTGCGAAGAGAGAGCTCGAAGATATAGAGAGACAAGAAATTGAGGCGAAATTGCTACAGGATTATATTAATCAGCTCGAATCAAGAGCCGCAGAGATTGCAGAATGCCAGCAGGAGATTGACGCAGCAAGATCAATGGTTGAGGAAGCAGAACGCTCCTTGTCATTAGCAGATAACTCGACAATTGGAAGTTCGGAGAAAGGTTATTCGATTGATAAAGACAAGGAGAGGTTAGAATCTGCAAAAGCGGCAGTGATCGCAGCTGCGGTTGGGACCATTGCGGAACTCCCATTTGCTCTTTCTCAAGTCGCAAGCATGGAGCAGCTTGTTCTGCCCCTGGGAATAGCGTTTGCAAGCTGTGCATTGTTTGGAGTCACATTCAGGTATGCAGTCAGAAGAGACTTGGATGATAATCATCTCAAATCCGGAGCCGTTGCAGCTTTTGGGTTTGTTAAAGGACTTGGTATGTTGAGCAGAGGACCGCCATTGGAGCTGAGCTGGGAAAGCTTGTTTTCACATGGGATAGACGGCGCCGTTTTGGTGTCTCAGAGCGTCTTGATATTTGCGTTTGCGTCCATAGGTTTGGACTTCTGTTTCAAGATGAAGCTCTTAAGACCATTTCCTAGCTCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.64

Weight (kDa)

4.97

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24090
fragaria_vesca FvH4_5g11010
malus_domestica MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica Prupe.5G128700_v2.0.a1
pyrus_communis pycom14g11050
rosa_chinensis RchiOBHm_Chr7g0186801
rosa_laevigata RLG00000004814
rosa_multiflora Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii Rroxscaffold_3G00267810
rosa_rugosa Rorug06G0476800
rosa_samantha Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana Rw7G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 821
AccIII TCCGGA 1 cut(s) 716
AciI CCGC 6 cut(s) 174, 381, 539, 557, 572, 773
AcsI RAATTY 2 cut(s) 40, 187
AcyI GRCGYC 1 cut(s) 822
AflII CTTAAG 1 cut(s) 901
AgsI TTSAA 3 cut(s) 73, 184, 889
AjnI CCWGG 1 cut(s) 627
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 3 cut(s) 316, 684, 840
Ama87I CYCGRG 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 716
ApeKI GCWGC 5 cut(s) 416, 551, 554, 613, 728
ApoI RAATTY 2 cut(s) 40, 187
AseI ATTAAT 2 cut(s) 63, 360
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 2 cut(s) 564, 770
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 2 cut(s) 564, 770
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 5 cut(s) 428, 541, 563, 625, 740
BccI CCATC 1 cut(s) 254
BceAI ACGGC 4 cut(s) 187, 707, 809, 835
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 1 cut(s) 629
BcoDI GTCTC 3 cut(s) 316, 684, 840
BfaI CTAG 2 cut(s) 915, 925
BfmI CTRYAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 825
BfrI CTTAAG 1 cut(s) 901
BisI GCNGC 7 cut(s) 381, 417, 540, 552, 555, 614, 729
BlpI GCTNAGC 1 cut(s) 785
BlsI GCNGC 7 cut(s) 382, 418, 541, 553, 556, 615, 730
Bme1390I CCNGG 1 cut(s) 629
Bme18I GGWCC 2 cut(s) 564, 770
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 564, 770
BmiI GGNNCC 3 cut(s) 565, 721, 823
BmrFI CCNGG 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 579
BsaBI GATNNNNATC 2 cut(s) 702, 705
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 3 cut(s) 29, 627, 628
BsaWI WCCGGW 2 cut(s) 197, 716
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 2 cut(s) 702, 705
BseAI TCCGGA 1 cut(s) 716
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 3 cut(s) 29, 627, 628
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 2 cut(s) 702, 705
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 116, 776, 851
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 428, 541, 563, 625, 740
BseYI CCCAGC 1 cut(s) 789
BshNI GGYRCC 1 cut(s) 821
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 198, 717
BslFI GGGAC 1 cut(s) 577
BsmAI GTCTC 3 cut(s) 316, 684, 840
BsmFI GGGAC 1 cut(s) 577
BsmI GAATGC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 309
Bsp13I TCCGGA 1 cut(s) 716
Bsp143I GATC 2 cut(s) 422, 546
Bsp1720I GCTNAGC 1 cut(s) 785
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 6 cut(s) 174, 381, 539, 557, 572, 773
BspCNI CTCAG 3 cut(s) 115, 777, 850
BspEI TCCGGA 1 cut(s) 716
BspLI GGNNCC 3 cut(s) 565, 721, 823
BspT107I GGYRCC 1 cut(s) 821
BspTI CTTAAG 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 29, 627, 628
BssMI GATC 2 cut(s) 422, 546
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 629
Bst6I CTCTTC 3 cut(s) 234, 293, 682
BstACI GRCGYC 1 cut(s) 822
BstAFI CTTAAG 1 cut(s) 901
BstAPI GCANNNNNTGC 2 cut(s) 389, 650
BstC8I GCNNGC 3 cut(s) 401, 604, 646
BstDEI CTNAG 3 cut(s) 102, 785, 837
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 703
BstH2I RGCGCY 1 cut(s) 825
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 2 cut(s) 425, 549
BstMAI GTCTC 3 cut(s) 316, 684, 840
BstMBI GATC 2 cut(s) 422, 546
BstMWI GCNNNNNNNGC 8 cut(s) 389, 539, 548, 622, 650, 728, 781, 795
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 627
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 5 cut(s) 428, 541, 563, 625, 740
BstXI CCANNNNNNTGG 1 cut(s) 874
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 703
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 51, 549
Cac8I GCNNGC 3 cut(s) 401, 604, 646
CfoI GCGC 1 cut(s) 824
Cfr13I GGNCC 2 cut(s) 564, 770
CseI GACGC 3 cut(s) 422, 832, 852
CviAII CATG 3 cut(s) 30, 607, 809
DdeI CTNAG 3 cut(s) 102, 785, 837
DinI GGCGCC 1 cut(s) 823
DpnI GATC 2 cut(s) 424, 548
DpnII GATC 2 cut(s) 422, 546
Eam1104I CTCTTC 3 cut(s) 234, 293, 682
EarI CTCTTC 3 cut(s) 234, 293, 682
EciI GGCGGA 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 564, 770
Eco53kI GAGCTC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 823
EheI GGCGCC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 3 cut(s) 33, 610, 812
FaiI YATR 8 cut(s) 31, 317, 357, 608, 678, 758, 810, 869
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 577
FatI CATG 3 cut(s) 29, 606, 808
Fnu4HI GCNGC 7 cut(s) 381, 417, 540, 552, 555, 614, 729
FokI GGATG 1 cut(s) 710
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 7 cut(s) 381, 417, 540, 552, 555, 614, 729
FspBI CTAG 2 cut(s) 915, 925
GlaI GCGC 1 cut(s) 823
GluI GCNGC 7 cut(s) 381, 417, 540, 552, 555, 614, 729
GsaI CCCAGC 1 cut(s) 793
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 825
HapII CCGG 2 cut(s) 198, 717
HgaI GACGC 3 cut(s) 422, 832, 852
HhaI GCGC 1 cut(s) 824
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 3 cut(s) 33, 610, 812
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HindIII AAGCTT 2 cut(s) 273, 796
HinfI GANTC 4 cut(s) 73, 371, 527, 663
HpaII CCGG 2 cut(s) 198, 717
Hpy188I TCNGA 5 cut(s) 145, 487, 686, 840, 922
Hpy188III TCNNGA 5 cut(s) 266, 375, 717, 847, 889
Hpy99I CGWCG 1 cut(s) 145
HpyCH4V TGCA 8 cut(s) 4, 19, 392, 533, 644, 653, 680, 728
HpyF10VI GCNNNNNNNGC 8 cut(s) 389, 539, 548, 622, 650, 728, 781, 795
HpyF3I CTNAG 3 cut(s) 102, 785, 837
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 3 cut(s) 33, 610, 812
HspAI GCGC 1 cut(s) 822
KasI GGCGCC 1 cut(s) 821
Kpn2I TCCGGA 1 cut(s) 716
Kzo9I GATC 2 cut(s) 422, 546
LmnI GCTCC 5 cut(s) 223, 452, 610, 719, 781
Lsp1109I GCAGC 5 cut(s) 428, 541, 563, 625, 740
MaeI CTAG 2 cut(s) 915, 925
MaeIII GTNAC 3 cut(s) 46, 167, 664
MalI GATC 2 cut(s) 424, 548
MboI GATC 2 cut(s) 422, 546
MboII GAAGA 6 cut(s) 158, 196, 251, 310, 323, 699
MfeI CAATTG 2 cut(s) 83, 474
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 9 cut(s) 40, 60, 83, 129, 159, 187, 330, 341, 474
Mly113I GGCGCC 1 cut(s) 822
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 6 cut(s) 103, 214, 328, 427, 513, 761
MroI TCCGGA 1 cut(s) 716
MseI TTAA 4 cut(s) 63, 360, 744, 902
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 901
MspI CCGG 2 cut(s) 198, 717
MspR9I CCNGG 1 cut(s) 629
MunI CAATTG 2 cut(s) 83, 474
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 1 cut(s) 629
MwoI GCNNNNNNNGC 8 cut(s) 389, 539, 548, 622, 650, 728, 781, 795
NarI GGCGCC 1 cut(s) 822
NcoI CCATGG 1 cut(s) 29
NdeII GATC 2 cut(s) 422, 546
NlaIII CATG 3 cut(s) 33, 610, 812
NlaIV GGNNCC 3 cut(s) 565, 721, 823
NmuCI GTSAC 3 cut(s) 46, 167, 664
PaeR7I CTCGAG 1 cut(s) 94
PasI CCCWGGG 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 3 cut(s) 73, 371, 527
PkrI GCNGC 7 cut(s) 382, 418, 541, 553, 556, 615, 730
PleI GAGTC 1 cut(s) 671
PluTI GGCGCC 1 cut(s) 825
PpsI GAGTC 1 cut(s) 671
PshBI ATTAAT 2 cut(s) 63, 360
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 627
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 3 cut(s) 565, 721, 823
PspPI GGNCC 2 cut(s) 564, 770
PspXI VCTCGAGB 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 554
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 4 cut(s) 63, 360, 744, 902
SatI GCNGC 7 cut(s) 381, 417, 540, 552, 555, 614, 729
Sau3AI GATC 2 cut(s) 422, 546
Sau96I GGNCC 2 cut(s) 564, 770
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 347
SfoI GGCGCC 1 cut(s) 823
Sfr274I CTCGAG 1 cut(s) 94
SinI GGWCC 2 cut(s) 564, 770
SlaI CTCGAG 1 cut(s) 94
SmlI CTYRAG 3 cut(s) 94, 594, 901
SmoI CTYRAG 3 cut(s) 94, 594, 901
Sse9I AATT 9 cut(s) 40, 60, 83, 129, 159, 187, 330, 341, 474
SsiI CCGC 6 cut(s) 174, 381, 539, 557, 572, 773
SspDI GGCGCC 1 cut(s) 821
SspMI CTAG 2 cut(s) 915, 925
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 627
StyI CCWWGG 1 cut(s) 29
TaqI TCGA 7 cut(s) 95, 118, 164, 309, 369, 470, 500
TasI AATT 9 cut(s) 40, 60, 83, 129, 159, 187, 330, 341, 474
TauI GCSGC 2 cut(s) 383, 542
TfiI GAWTC 3 cut(s) 73, 371, 527
Tru1I TTAA 4 cut(s) 63, 360, 744, 902
Tru9I TTAA 4 cut(s) 63, 360, 744, 902
TscAI CASTG 2 cut(s) 51, 549
TseFI GTSAC 3 cut(s) 46, 167, 664
TseI GCWGC 5 cut(s) 416, 551, 554, 613, 728
Tsp45I GTSAC 3 cut(s) 46, 167, 664
TspDTI ATGAA 1 cut(s) 908
TspRI CASTG 2 cut(s) 51, 549
Vha464I CTTAAG 1 cut(s) 901
VpaK11BI GGWCC 2 cut(s) 564, 770
VspI ATTAAT 2 cut(s) 63, 360
XapI RAATTY 2 cut(s) 40, 187
XhoI CTCGAG 1 cut(s) 94
XspI CTAG 2 cut(s) 915, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.