FvH4_5g11010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014055
Physical Location & Seq
Reverse (-)
6219965 .. 6221770
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11010.t1

Sequence Viewer

Length: 948 bp
ATGCCCTTAACCATCAATCTTGTTCCCTCCACAAACCCCATATCTCTCTCCCCACGAAACCTCCTCATCACCTGCGGAATCTTCCACGTCCTTCCTCTTTCTCCTTCAACACTTCGTCCCCTTCTAGTGAAATGCAGGGCCAGCTCCTCTGAGAACAGCGGTAGCTTCAAGGACTCGCTGGGTGGCATTGTGGGCGAGCAAGTGGAAGAGCTACTCAACAAAGAAGAGAACAAGGTTTTGCTTGATGGGTTGGTCAAAGCGTCCGGGAGGGTTGAGAATGCCAAAAGAGAACTCGCTGCAATTGAAAGACAAGAACGTGAGGCTAAGCTTGCGAGGGAGTATATAAAAGAACTTGAAACCAGGGCTTCTGAGATTGAAGAATGTCAAAAGGAGATATCAGAGGCAAAAGCCATGGTGGAAGAAGCCGAACGTGCCCTCACACAAACTGGGGATGAATTCAAAAATGGATATGCTTCTGCAGAGACCGAGAATGGGGAAATCGACAAGGATCAAGAGAAATTGGAATCTATAAAAGCAGCTTCAGTTGCTTCCCTTGTTGGCACAGTTGCTGGATTGCCCTTCTCCTTCACTCAAGTGAGCAACAGTTCTGAGCTGATACTCCCTCTGGCAATCACCTTTATTAGCTGTGCACTGTTTGGAGTTACATTTCGATATGCCATAAGAAGAGACTTGGACAATGGCCACCTGAAGACTGGAGCACCTGCAGCTTTTGGGGTTGTCAAAGGTCTTGCTATGCTGGAAGCCGGAAAACCTCTGGAACTAAACACTGATAGCTTAATATCCCATGCTTTTGATGGTGCAGTGTATGTATCTGAAAATCTTTTTGTTTTTCTTTCTGCTGCTGTTGCTCTAGACTATTTGTTTAAGACGAGGCTCTTGAGTCCATTTCCTATCAAGAAATCTGTTTCAAGATCCAACTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.21

Weight (kDa)

5.4

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24090
fragaria_vesca FvH4_5g11010
malus_domestica MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica Prupe.5G128700_v2.0.a1
pyrus_communis pycom14g11050
rosa_chinensis RchiOBHm_Chr7g0186801
rosa_laevigata RLG00000004814
rosa_multiflora Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii Rroxscaffold_3G00267810
rosa_rugosa Rorug06G0476800
rosa_samantha Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana Rw7G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 80, 730
Acc36I ACCTGC 2 cut(s) 80, 730
AciI CCGC 2 cut(s) 75, 159
AclWI GGATC 2 cut(s) 516, 927
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 525, 728
AfiI CCNNNNNNNGG 1 cut(s) 492
AgsI TTSAA 7 cut(s) 108, 169, 305, 356, 377, 460, 930
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 359
AleI CACNNNNGTG 1 cut(s) 593
AluBI AGCT 9 cut(s) 144, 165, 211, 328, 539, 613, 645, 728, 795
AluI AGCT 9 cut(s) 144, 165, 211, 328, 539, 613, 645, 728, 795
Alw21I GWGCWC 2 cut(s) 652, 721
Alw26I GTCTC 2 cut(s) 476, 681
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 2 cut(s) 516, 927
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 2 cut(s) 138, 700
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 4 cut(s) 296, 536, 725, 860
ApoI RAATTY 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 61, 625
BaeGI GKGCMC 2 cut(s) 436, 652
BalI TGGCCA 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 2 cut(s) 652, 721
BbvI GCAGC 4 cut(s) 283, 548, 737, 847
BccI CCATC 3 cut(s) 20, 239, 809
BciT130I CCWGG 1 cut(s) 361
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 476, 681
BfaI CTAG 3 cut(s) 125, 872, 942
BfmI CTRYAG 2 cut(s) 477, 723
BfuAI ACCTGC 2 cut(s) 80, 730
BisI GCNGC 4 cut(s) 297, 537, 726, 861
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 4 cut(s) 298, 538, 727, 862
Bme1390I CCNGG 2 cut(s) 265, 361
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 265, 361
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 576, 919
BpuMI CCSGG 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 360, 411
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 2 cut(s) 451, 718
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 360, 411
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMII CTCAG 3 cut(s) 141, 360, 600
BseNI ACTGG 2 cut(s) 451, 718
BseRI GAGGAG 2 cut(s) 53, 136
BseSI GKGCMC 2 cut(s) 436, 652
BseXI GCAGC 4 cut(s) 283, 548, 737, 847
BseYI CCCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 840
BshFI GGCC 2 cut(s) 140, 702
BsiHKAI GWGCWC 2 cut(s) 652, 721
BsiSI CCGG 2 cut(s) 264, 765
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 2 cut(s) 476, 681
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 2 cut(s) 140, 702
Bso31I GGTCTC 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 436, 652, 721
Bsp143I GATC 2 cut(s) 508, 932
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 2 cut(s) 75, 159
BspANI GGCC 2 cut(s) 140, 702
BspCNI CTCAG 3 cut(s) 142, 361, 601
BspMAI CTGCAG 2 cut(s) 481, 727
BspMI ACCTGC 2 cut(s) 80, 730
BspPI GGATC 2 cut(s) 516, 927
BspQI GCTCTTC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 476
BsrI ACTGG 2 cut(s) 451, 718
BssECI CCNNGG 2 cut(s) 360, 411
BssMI GATC 2 cut(s) 508, 932
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 565, 605, 654
Bst6I CTCTTC 3 cut(s) 201, 219, 679
BstC8I GCNNGC 3 cut(s) 142, 197, 330
BstDEI CTNAG 4 cut(s) 150, 324, 369, 609
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 2 cut(s) 511, 935
BstMAI GTCTC 2 cut(s) 476, 681
BstMBI GATC 2 cut(s) 508, 932
BstMWI GCNNNNNNNGC 7 cut(s) 141, 192, 329, 431, 545, 725, 866
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 263, 359
BstSFI CTRYAG 2 cut(s) 477, 723
BstSLI GKGCMC 2 cut(s) 436, 652
BstV1I GCAGC 4 cut(s) 283, 548, 737, 847
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
BsuRI GGCC 2 cut(s) 140, 702
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 3 cut(s) 650, 786, 828
BveI ACCTGC 2 cut(s) 80, 730
Cac8I GCNNGC 3 cut(s) 142, 197, 330
CaiI CAGNNNCTG 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 249
CviAII CATG 2 cut(s) 412, 806
DdeI CTNAG 4 cut(s) 150, 324, 369, 609
DpnI GATC 2 cut(s) 510, 934
DpnII GATC 2 cut(s) 508, 932
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 3 cut(s) 201, 219, 679
EarI CTCTTC 3 cut(s) 201, 219, 679
Eco130I CCWWGG 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 525, 728
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 2 cut(s) 415, 809
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 411, 805
Fnu4HI GCNGC 4 cut(s) 297, 537, 726, 861
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 297, 537, 726, 861
FspBI CTAG 3 cut(s) 125, 872, 942
GluI GCNGC 4 cut(s) 297, 537, 726, 861
GsaI CCCAGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 2 cut(s) 140, 702
HapII CCGG 2 cut(s) 264, 765
HgaI GACGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 415, 809
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 78, 173, 524, 901
HpaII CCGG 2 cut(s) 264, 765
HphI GGTGA 2 cut(s) 61, 625
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 5 cut(s) 151, 370, 400, 610, 835
Hpy188III TCNNGA 7 cut(s) 512, 776, 872, 898, 916, 930, 942
Hpy8I GTNNAC 1 cut(s) 650
HpyAV CCTTC 5 cut(s) 101, 114, 131, 589, 595
HpyCH4III ACNGT 3 cut(s) 565, 605, 654
HpyCH4IV ACGT 3 cut(s) 87, 316, 430
HpyCH4V TGCA 6 cut(s) 135, 299, 479, 650, 725, 821
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 192, 329, 431, 545, 725, 866
HpyF3I CTNAG 4 cut(s) 150, 324, 369, 609
HpySE526I ACGT 3 cut(s) 87, 316, 430
Hsp92II CATG 2 cut(s) 415, 809
Kzo9I GATC 2 cut(s) 508, 932
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 2 cut(s) 149, 716
Lsp1109I GCAGC 4 cut(s) 283, 548, 737, 847
MaeI CTAG 3 cut(s) 125, 872, 942
MaeII ACGT 3 cut(s) 87, 316, 430
MaeIII GTNAC 1 cut(s) 661
MalI GATC 2 cut(s) 510, 934
MboI GATC 2 cut(s) 508, 932
MboII GAAGA 7 cut(s) 73, 218, 236, 389, 431, 696, 721
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 3 cut(s) 436, 652, 721
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 3 cut(s) 300, 455, 518
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 2 cut(s) 167, 910
Mox20I TGGCCA 1 cut(s) 702
MscI TGGCCA 1 cut(s) 702
MseI TTAA 3 cut(s) 8, 797, 885
MslI CAYNNNNRTG 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 702
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 2 cut(s) 264, 765
MspR9I CCNGG 2 cut(s) 265, 361
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 7 cut(s) 141, 192, 329, 431, 545, 725, 866
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 411
NdeII GATC 2 cut(s) 508, 932
NlaIII CATG 2 cut(s) 415, 809
OliI CACNNNNGTG 1 cut(s) 593
PaqCI CACCTGC 2 cut(s) 80, 730
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 78, 524
PfoI TCCNGGA 1 cut(s) 263
PkrI GCNGC 4 cut(s) 298, 538, 727, 862
PleI GAGTC 2 cut(s) 167, 909
PpsI GAGTC 2 cut(s) 167, 909
Psp6I CCWGG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 178
PspGI CCWGG 1 cut(s) 359
PspPI GGNCC 1 cut(s) 138
PstI CTGCAG 2 cut(s) 481, 727
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 932
RseI CAYNNNNRTG 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 3 cut(s) 8, 797, 885
SatI GCNGC 4 cut(s) 297, 537, 726, 861
Sau3AI GATC 2 cut(s) 508, 932
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 167, 910
ScrFI CCNGG 2 cut(s) 265, 361
SduI GDGCHC 3 cut(s) 436, 652, 721
SfcI CTRYAG 2 cut(s) 477, 723
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 2 cut(s) 591, 898
SmoI CTYRAG 2 cut(s) 591, 898
Sse9I AATT 3 cut(s) 300, 455, 518
SsiI CCGC 2 cut(s) 75, 159
SspMI CTAG 3 cut(s) 125, 872, 942
StyD4I CCNGG 2 cut(s) 263, 359
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 565, 605, 654
TaiI ACGT 3 cut(s) 90, 319, 433
TaqI TCGA 2 cut(s) 501, 670
TaqII GACCGA 1 cut(s) 500
TasI AATT 3 cut(s) 300, 455, 518
TfiI GAWTC 2 cut(s) 78, 524
Tru1I TTAA 3 cut(s) 8, 797, 885
Tru9I TTAA 3 cut(s) 8, 797, 885
TscAI CASTG 3 cut(s) 657, 793, 828
TseI GCWGC 4 cut(s) 296, 536, 725, 860
TspDTI ATGAA 1 cut(s) 468
TspRI CASTG 3 cut(s) 657, 793, 828
VneI GTGCAC 1 cut(s) 648
XapI RAATTY 1 cut(s) 455
XbaI TCTAGA 2 cut(s) 871, 941
XcmI CCANNNNNNNNNTGG 2 cut(s) 710, 812
XspI CTAG 3 cut(s) 125, 872, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.