Prupe.5G128700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014055
Physical Location & Seq
Forward (+)
12496458 .. 12498921
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G128700.1

Sequence Viewer

Length: 963 bp
ATGCCCTTAACCATCAATCTCACTTGGGTTTCCTCCACAATCCCCATATCTCTCCTCCCAAGAGAACTCATCACAGCATCAAAAACCTGCTCTACAATCTTTCACAGAGCTTCTTCTCCTTCAACATCTCGTCCCCTCATAGTCAAATGCACGAGAAGCACCTCTGGAGAGAGCGGTAGCTTGAAGGACGCACTGAGTGGCATTGTGGGAGAGCAAGTAGAGGAGCTCTTAAAAAGAGAAGAGAACAGGGATTTGCTTGATGGGTTGGAAAAGGCATCTCAAAGGGTAGAGATGGCTAAGAGAGAGCTGGCTGAGATTGAGAAACAAGAACTTGAGGCAAAGCGTGTGAGAGATTATATTAACCAACTTGAAAGCAGGGCTTCTGAGATTGCAGAATGTCAAAAGGAGATATTAGAAGCAAAAGCCATGGTTGAAGAAGCTGAGCGTGCCCTCTCACAAGATGGGGATCAACTTGGAGATGGATATGGATTTTCAGAGACTGGAAATGGGGAAATTGACAAGGATAAAGAGAGATGGCAATCCATAAAAGCAGCTTCTATTTCTGCCCTTGTCGGCACCGTTGCTGGATTGCCCTTCTCCTTCACTCAGGTGTCCAGCAGTTCAGAGCTGATACTCCCTCTGGCAATCACATTTGTTAGCTGTGCACTATTTGGAGTTACCTTTCGATATGCAGTTCGAAGAGACTTGGATGATGTTCATCTTAAGACAGGAGCACCTGCAGCTTTCGGAGTTGTCAAAGGTCTTGCTACACTGGATGGTGGACAACCTCTTCAGCTAAATGCTGGTAGCTTCTTATTACATGCTTTTCATGGTGCACTCTATGTATCTGAGAGTCTTTTTGTTTTTCTTTCTGCTGCTATTGCCCTGGATTATTGTTTTAAGGCAAGGCTCTTGAGTCCTTTTCCTGTCAAGAATCCTGTATCAGGATCCAATTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

34.72

Weight (kDa)

5.46

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24090
fragaria_vesca FvH4_5g11010
malus_domestica MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica Prupe.5G128700_v2.0.a1
pyrus_communis pycom14g11050
rosa_chinensis RchiOBHm_Chr7g0186801
rosa_laevigata RLG00000004814
rosa_multiflora Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii Rroxscaffold_3G00267810
rosa_rugosa Rorug06G0476800
rosa_samantha Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana Rw7G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 2 cut(s) 95, 745
AccB1I GGYRCC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 1 cut(s) 174
AclWI GGATC 3 cut(s) 474, 942, 955
AcuI CTGAAG 1 cut(s) 776
AdeI CACNNNGTG 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 944
AflII CTTAAG 1 cut(s) 722
AgsI TTSAA 4 cut(s) 123, 184, 371, 434
AjnI CCWGG 1 cut(s) 885
AleI CACNNNNGTG 1 cut(s) 608
Alw21I GWGCWC 4 cut(s) 228, 667, 736, 838
Alw26I GTCTC 2 cut(s) 491, 696
Alw44I GTGCAC 2 cut(s) 663, 834
AlwI GGATC 3 cut(s) 474, 942, 955
AlwNI CAGNNNCTG 1 cut(s) 500
ApaLI GTGCAC 2 cut(s) 663, 834
ApeKI GCWGC 3 cut(s) 551, 740, 875
AsuII TTCGAA 1 cut(s) 697
BaeGI GKGCMC 3 cut(s) 451, 667, 838
BamHI GGATCC 1 cut(s) 947
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 151
Bbv12I GWGCWC 4 cut(s) 228, 667, 736, 838
BbvI GCAGC 3 cut(s) 563, 752, 862
BccI CCATC 7 cut(s) 20, 254, 286, 455, 473, 528, 770
BciT130I CCWGG 1 cut(s) 887
BcoDI GTCTC 2 cut(s) 491, 696
BfaI CTAG 1 cut(s) 957
BfmI CTRYAG 1 cut(s) 738
BfrI CTTAAG 1 cut(s) 722
BfuAI ACCTGC 2 cut(s) 95, 745
BisI GCNGC 3 cut(s) 552, 741, 876
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 553, 742, 877
Bme1390I CCNGG 1 cut(s) 887
BmiI GGNNCC 2 cut(s) 577, 949
BmrFI CCNGG 1 cut(s) 887
BmsI GCATC 2 cut(s) 86, 284
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 697
BpuEI CTTGAG 2 cut(s) 353, 934
BsaBI GATNNNNATC 3 cut(s) 465, 538, 717
BsaJI CCNNGG 2 cut(s) 426, 885
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 944
Bse1I ACTGG 2 cut(s) 505, 777
Bse8I GATNNNNATC 3 cut(s) 465, 538, 717
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 2 cut(s) 426, 885
BseGI GGATG 2 cut(s) 715, 781
BseJI GATNNNNATC 3 cut(s) 465, 538, 717
BseLI CCNNNNNNNGG 1 cut(s) 944
BseMII CTCAG 6 cut(s) 185, 303, 375, 432, 620, 840
BseNI ACTGG 2 cut(s) 505, 777
BseRI GAGGAG 2 cut(s) 44, 236
BseSI GKGCMC 3 cut(s) 451, 667, 838
BseXI GCAGC 3 cut(s) 563, 752, 862
BshNI GGYRCC 1 cut(s) 575
BsiHKAI GWGCWC 4 cut(s) 228, 667, 736, 838
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 944
BsmAI GTCTC 2 cut(s) 491, 696
BsmFI GGGAC 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 697
Bsp1286I GDGCHC 5 cut(s) 228, 451, 667, 736, 838
Bsp143I GATC 2 cut(s) 466, 947
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 6 cut(s) 186, 304, 376, 433, 619, 841
BspLI GGNNCC 2 cut(s) 577, 949
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 2 cut(s) 95, 745
BspPI GGATC 3 cut(s) 474, 942, 955
BspT104I TTCGAA 1 cut(s) 697
BspT107I GGYRCC 1 cut(s) 575
BspTI CTTAAG 1 cut(s) 722
BsrBI CCGCTC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 505, 777
BssECI CCNNGG 2 cut(s) 426, 885
BssMI GATC 2 cut(s) 466, 947
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 3 cut(s) 234, 694, 795
BstAFI CTTAAG 1 cut(s) 722
BstBI TTCGAA 1 cut(s) 697
BstC8I GCNNGC 2 cut(s) 309, 447
BstDEI CTNAG 7 cut(s) 194, 297, 312, 384, 441, 606, 849
BstDSI CCRYGG 1 cut(s) 426
BstENI CCTNNNNNAGG 1 cut(s) 942
BstF5I GGATG 2 cut(s) 715, 781
BstKTI GATC 2 cut(s) 469, 950
BstMAI GTCTC 2 cut(s) 491, 696
BstMBI GATC 2 cut(s) 466, 947
BstMWI GCNNNNNNNGC 4 cut(s) 156, 446, 740, 881
BstNI CCWGG 1 cut(s) 887
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 1 cut(s) 885
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 3 cut(s) 451, 667, 838
BstV1I GCAGC 3 cut(s) 563, 752, 862
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 715, 781
BtsIMutI CAGTG 2 cut(s) 191, 770
BveI ACCTGC 2 cut(s) 95, 745
Cac8I GCNNGC 2 cut(s) 309, 447
CaiI CAGNNNCTG 1 cut(s) 500
CseI GACGC 1 cut(s) 197
CviAII CATG 3 cut(s) 427, 821, 830
DdeI CTNAG 7 cut(s) 194, 297, 312, 384, 441, 606, 849
DpnI GATC 2 cut(s) 468, 949
DpnII GATC 2 cut(s) 466, 947
DraIII CACNNNGTG 1 cut(s) 197
Eam1104I CTCTTC 3 cut(s) 234, 694, 795
EarI CTCTTC 3 cut(s) 234, 694, 795
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 430, 824, 833
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 426, 820, 829
Fnu4HI GCNGC 3 cut(s) 552, 741, 876
FokI GGATG 2 cut(s) 722, 788
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 552, 741, 876
FspBI CTAG 1 cut(s) 957
GluI GCNGC 3 cut(s) 552, 741, 876
GsuI CTGGAG 1 cut(s) 186
HgaI GACGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 430, 824, 833
HinfI GANTC 3 cut(s) 853, 916, 934
Hpy166II GTNNAC 3 cut(s) 665, 782, 836
Hpy188I TCNGA 5 cut(s) 385, 496, 625, 749, 850
Hpy188III TCNNGA 5 cut(s) 165, 913, 931, 945, 957
Hpy8I GTNNAC 3 cut(s) 665, 782, 836
HpyAV CCTTC 4 cut(s) 129, 178, 604, 610
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4V TGCA 6 cut(s) 150, 392, 665, 692, 740, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 446, 740, 881
HpyF3I CTNAG 7 cut(s) 194, 297, 312, 384, 441, 606, 849
Hsp92II CATG 3 cut(s) 430, 824, 833
Kzo9I GATC 2 cut(s) 466, 947
LmnI GCTCC 2 cut(s) 223, 731
Lsp1109I GCAGC 3 cut(s) 563, 752, 862
LweI GCATC 2 cut(s) 86, 284
MaeI CTAG 1 cut(s) 957
MaeIII GTNAC 1 cut(s) 676
MalI GATC 2 cut(s) 468, 949
MbiI CCGCTC 1 cut(s) 174
MboI GATC 2 cut(s) 466, 947
MboII GAAGA 5 cut(s) 105, 251, 446, 711, 782
MflI RGATCY 1 cut(s) 947
MhlI GDGCHC 5 cut(s) 228, 451, 667, 736, 838
MluCI AATT 2 cut(s) 513, 952
MlyI GAGTC 2 cut(s) 862, 925
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 9 cut(s) 43, 65, 146, 172, 214, 328, 461, 648, 798
MseI TTAA 5 cut(s) 8, 230, 360, 723, 900
MslI CAYNNNNRTG 1 cut(s) 608
MspCI CTTAAG 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 887
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 4 cut(s) 156, 446, 740, 881
NcoI CCATGG 1 cut(s) 426
NdeII GATC 2 cut(s) 466, 947
NlaIII CATG 3 cut(s) 430, 824, 833
NlaIV GGNNCC 2 cut(s) 577, 949
NspI RCATGY 1 cut(s) 824
NspV TTCGAA 1 cut(s) 697
OliI CACNNNNGTG 1 cut(s) 608
PaqCI CACCTGC 1 cut(s) 745
PfeI GAWTC 1 cut(s) 934
PkrI GCNGC 3 cut(s) 553, 742, 877
PleI GAGTC 2 cut(s) 861, 924
PpsI GAGTC 2 cut(s) 861, 924
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 885
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 2 cut(s) 577, 949
PstI CTGCAG 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 947
RseI CAYNNNNRTG 1 cut(s) 608
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 5 cut(s) 8, 230, 360, 723, 900
SatI GCNGC 3 cut(s) 552, 741, 876
Sau3AI GATC 2 cut(s) 466, 947
SchI GAGTC 2 cut(s) 862, 925
ScrFI CCNGG 1 cut(s) 887
SduI GDGCHC 5 cut(s) 228, 451, 667, 736, 838
SfaNI GCATC 2 cut(s) 86, 284
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 3 cut(s) 332, 722, 913
SmoI CTYRAG 3 cut(s) 332, 722, 913
Sse9I AATT 2 cut(s) 513, 952
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 957
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 885
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 580
TaqI TCGA 2 cut(s) 685, 697
TasI AATT 2 cut(s) 513, 952
TfiI GAWTC 1 cut(s) 934
Tru1I TTAA 5 cut(s) 8, 230, 360, 723, 900
Tru9I TTAA 5 cut(s) 8, 230, 360, 723, 900
TscAI CASTG 2 cut(s) 198, 777
TseI GCWGC 3 cut(s) 551, 740, 875
TspDTI ATGAA 2 cut(s) 707, 818
TspRI CASTG 2 cut(s) 198, 777
Vha464I CTTAAG 1 cut(s) 722
VneI GTGCAC 2 cut(s) 663, 834
XagI CCTNNNNNAGG 1 cut(s) 942
XbaI TCTAGA 1 cut(s) 956
XceI RCATGY 1 cut(s) 824
XspI CTAG 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.