Rh7AG063700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014055
Physical Location & Seq
Reverse (-)
4412936 .. 4414247
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG063700.1

Sequence Viewer

Length: 948 bp
ATGCCCTTAACCATCAATCTTGTTCCCTCCACAAACTCCATATCCCTCTTCCCACGAAACCTCCTCATCACCTCCAGAATCTTTCACAGACCTCCTCCTTCTTCTTCAACACTTCGTTTCCTTCTTGTGAAATGCAGGGCCAGCGCCTCTGAAAACAGCGGTAGCTTCAAGGACTCGCTGGGTGGCATTGTGGGCGAGCAAGTGGAGGAGCTACTCAACAAAGAAGAGAACAGGGTTTTGCTTGATGGGTTGGTCAAAGCGTCGGAGAGGGTAGAGAATGCCAAAAGAGAACTCGCTGAGATTGAAAGACAAGAACTTGAGGCTAAGCTTGCGAGGGAGTATATTAACAAACTTGAAACCAGGGCTTCTGAGATTGATGAATGTCAAAAGGAGATATCAGAGGCAAAAGCCATGGTGGAAGAAGCCGAACGTGCCCTCACACAAACTGGGGATCAATTCGGAAATGGATATGCTTCTGCAGAGTCTGAGAATGGGGAAATCGACAAGGATCAAGAGAAGTTGGAATCCATAAAAGCAGCTTCAGTTGCAGCCCTTGTTGGCACAGTTGCTGGATTGCCCTTCTCCTTCACTCAAGTGAACAGCAGTTCTGAGCTGATACTCCCTCTGGCAATCACCTTTATTAGCTGTGCACTATTCGGAGTTACATTCCGATACGCCATAAGGAGAGACTTGGATAATGGTCACCTTAAGACAGGAGCACCTGCAGCTTTTGGGGTTGTCAAAGGTCTTGCTATGCTGGATGGTGGAAGACCTCTGGAACTAAACACTGATAGCTTAATATCACATGCTTTTAATGGTGCAGTGTATGTATCTGAAAATCTTTTTGTTTTTCTTTCTGCTGCTGTTGCTCTGGATTATTTGTTTAAGGCGAGGCTCCTGAGTCCTTTCCCTATCAAGAAATCTATTTCAGGATCCAACTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

34.21

Weight (kDa)

5.28

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24090
fragaria_vesca FvH4_5g11010
malus_domestica MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica Prupe.5G128700_v2.0.a1
pyrus_communis pycom14g11050
rosa_chinensis RchiOBHm_Chr7g0186801
rosa_laevigata RLG00000004814
rosa_multiflora Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii Rroxscaffold_3G00267810
rosa_rugosa Rorug06G0476800
rosa_samantha Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana Rw7G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 730
Acc36I ACCTGC 1 cut(s) 730
AciI CCGC 1 cut(s) 159
AclWI GGATC 4 cut(s) 459, 516, 927, 940
AcuI CTGAAG 1 cut(s) 525
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 4 cut(s) 108, 169, 305, 356
AjnI CCWGG 1 cut(s) 359
AleI CACNNNNGTG 1 cut(s) 593
AluBI AGCT 8 cut(s) 165, 211, 328, 539, 613, 645, 728, 795
AluI AGCT 8 cut(s) 165, 211, 328, 539, 613, 645, 728, 795
Alw21I GWGCWC 2 cut(s) 652, 721
Alw26I GTCTC 1 cut(s) 681
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 4 cut(s) 459, 516, 927, 940
AlwNI CAGNNNCTG 2 cut(s) 485, 569
AoxI GGCC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 4 cut(s) 536, 548, 725, 860
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 61, 625, 695
BaeGI GKGCMC 2 cut(s) 436, 652
BamHI GGATCC 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 775
Bbv12I GWGCWC 2 cut(s) 652, 721
BbvI GCAGC 4 cut(s) 548, 560, 737, 847
BccI CCATC 3 cut(s) 20, 239, 755
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 681
BfmI CTRYAG 2 cut(s) 477, 723
BfoI RGCGCY 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 730
BisI GCNGC 4 cut(s) 537, 549, 726, 861
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 4 cut(s) 538, 550, 727, 862
Bme1390I CCNGG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 896, 934
BmrFI CCNGG 1 cut(s) 361
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 775
BpmI CTGGAG 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 338, 576
BsaJI CCNNGG 2 cut(s) 360, 411
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 360, 411
BseGI GGATG 1 cut(s) 766
BseMII CTCAG 5 cut(s) 288, 360, 477, 600, 890
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 53, 84, 221
BseSI GKGCMC 2 cut(s) 436, 652
BseXI GCAGC 4 cut(s) 548, 560, 737, 847
BseYI CCCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 840
BshFI GGCC 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 652, 721
BsmAI GTCTC 1 cut(s) 681
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 436, 652, 721
Bsp143I GATC 3 cut(s) 451, 508, 932
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 5 cut(s) 289, 361, 478, 601, 891
BspLI GGNNCC 2 cut(s) 896, 934
BspMAI CTGCAG 2 cut(s) 481, 727
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 4 cut(s) 459, 516, 927, 940
BspTI CTTAAG 1 cut(s) 707
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 360, 411
BssMI GATC 3 cut(s) 451, 508, 932
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 2 cut(s) 53, 219
BstAFI CTTAAG 1 cut(s) 707
BstC8I GCNNGC 3 cut(s) 142, 197, 330
BstDEI CTNAG 6 cut(s) 297, 324, 369, 486, 609, 899
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 1 cut(s) 766
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 3 cut(s) 454, 511, 935
BstMAI GTCTC 1 cut(s) 681
BstMBI GATC 3 cut(s) 451, 508, 932
BstMWI GCNNNNNNNGC 7 cut(s) 141, 192, 329, 431, 545, 725, 866
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 809
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 359
BstSFI CTRYAG 2 cut(s) 477, 723
BstSLI GKGCMC 2 cut(s) 436, 652
BstV1I GCAGC 4 cut(s) 548, 560, 737, 847
BstV2I GAAGAC 1 cut(s) 775
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 766
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 2 cut(s) 786, 828
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 142, 197, 330
CaiI CAGNNNCTG 2 cut(s) 485, 569
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 249
CviAII CATG 2 cut(s) 412, 806
DdeI CTNAG 6 cut(s) 297, 324, 369, 486, 609, 899
DpnI GATC 3 cut(s) 453, 510, 934
DpnII GATC 3 cut(s) 451, 508, 932
Eam1104I CTCTTC 2 cut(s) 53, 219
EarI CTCTTC 2 cut(s) 53, 219
Eco130I CCWWGG 1 cut(s) 411
Eco32I GATATC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 525
Eco91I GGTNACC 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 2 cut(s) 415, 809
FatI CATG 2 cut(s) 411, 805
Fnu4HI GCNGC 4 cut(s) 537, 549, 726, 861
FokI GGATG 1 cut(s) 773
Fsp4HI GCNGC 4 cut(s) 537, 549, 726, 861
GlaI GCGC 1 cut(s) 145
GluI GCNGC 4 cut(s) 537, 549, 726, 861
GsaI CCCAGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 140
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 415, 809
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 5 cut(s) 78, 173, 482, 524, 901
HphI GGTGA 3 cut(s) 61, 625, 695
Hpy166II GTNNAC 2 cut(s) 598, 650
Hpy188III TCNNGA 7 cut(s) 75, 512, 776, 872, 898, 916, 930
Hpy8I GTNNAC 2 cut(s) 598, 650
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 108, 131, 589, 595
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 6 cut(s) 135, 479, 548, 650, 725, 821
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 192, 329, 431, 545, 725, 866
HpyF3I CTNAG 6 cut(s) 297, 324, 369, 486, 609, 899
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 2 cut(s) 415, 809
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 451, 508, 932
LmnI GCTCC 3 cut(s) 208, 716, 900
Lsp1109I GCAGC 4 cut(s) 548, 560, 737, 847
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 661, 701
MalI GATC 3 cut(s) 453, 510, 934
MboI GATC 3 cut(s) 451, 508, 932
MboII GAAGA 6 cut(s) 40, 93, 96, 236, 431, 780
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 3 cut(s) 436, 652, 721
MluCI AATT 1 cut(s) 455
MlyI GAGTC 3 cut(s) 167, 491, 910
MmeI TCCRAC 2 cut(s) 243, 501
MseI TTAA 6 cut(s) 8, 345, 708, 797, 813, 885
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 7 cut(s) 141, 192, 329, 431, 545, 725, 866
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 451, 508, 932
NlaIII CATG 2 cut(s) 415, 809
NlaIV GGNNCC 2 cut(s) 896, 934
NmuCI GTSAC 1 cut(s) 701
NspI RCATGY 1 cut(s) 809
OliI CACNNNNGTG 1 cut(s) 593
PaqCI CACCTGC 1 cut(s) 730
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 78, 524
PkrI GCNGC 4 cut(s) 538, 550, 727, 862
PleI GAGTC 3 cut(s) 167, 490, 909
PpsI GAGTC 3 cut(s) 167, 490, 909
Psp6I CCWGG 1 cut(s) 359
PspEI GGTNACC 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 178
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 896, 934
PspPI GGNCC 1 cut(s) 138
PstI CTGCAG 2 cut(s) 481, 727
PstNI CAGNNNCTG 2 cut(s) 485, 569
PsuI RGATCY 1 cut(s) 932
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 6 cut(s) 8, 345, 708, 797, 813, 885
SatI GCNGC 4 cut(s) 537, 549, 726, 861
Sau3AI GATC 3 cut(s) 451, 508, 932
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 3 cut(s) 167, 491, 910
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 3 cut(s) 436, 652, 721
SfcI CTRYAG 2 cut(s) 477, 723
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 3 cut(s) 317, 591, 707
SmoI CTYRAG 3 cut(s) 317, 591, 707
Sse9I AATT 1 cut(s) 455
SsiI CCGC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 501
TasI AATT 1 cut(s) 455
TfiI GAWTC 2 cut(s) 78, 524
Tru1I TTAA 6 cut(s) 8, 345, 708, 797, 813, 885
Tru9I TTAA 6 cut(s) 8, 345, 708, 797, 813, 885
TscAI CASTG 2 cut(s) 793, 828
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 4 cut(s) 536, 548, 725, 860
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 2 cut(s) 793, 828
Vha464I CTTAAG 1 cut(s) 707
VneI GTGCAC 1 cut(s) 648
XceI RCATGY 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.