pycom14g11050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014055
Physical Location & Seq
Forward (+)
13814031 .. 13815401
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g11050.1

Sequence Viewer

Length: 978 bp
ATGCCCTTAACTATCAAGCTCACTTGGGCTCCCTCCACAAATCCCTCATCGCATCTCCTCCCCTCAAAACTCCTCACCCCATCTGAATCCTCCTCCGCAATCTTCTTCCCCCGATCTTCTAATCCTTCCCCACCTCATCGACCCCTCATAGCAAAATGCACGACTGGCGGCGCTGCCGGAGAGGGCGGCGGCTTGAAGAAGGCACTGAGTGGCATTGTGGGAGAGCAAGTGGAGGAGCTCTTGAAAAGAAAAGAGAACAGGGAGTTGCTCGATGGGTTGGAAAAGGCGTCTCAGAGAGTTGAGATTGCTAAGAGAGAGCTGGCTGAGATTGAAAGGCAGGAACTTGAGGCCAAGCTTGTGAGGGATTACATTGCTCAACTAGAAAGCAGAGCTTCTGAGGTTCTAAATCTTCTCAAATGTCAAAAGGAGATATCAGAAGCAAAATCCATGGTTGAAGAAGCTGAACGTGCCGTCTCACAAGACGGGGATCAACTCGGTGGCGGATATGCTTTTGCAGCGACCGAAAATAAGGAAATCGACAAGGATAAAGAGAGATGGCAATCCATAAAAGCAGCTTCAGTTTCCGCCCTAGCCGGCACTGTTGCTTCATTGCCCTTCTCCTTCACTCAGGTGGCAAGCATTTCTGAGCTGATCCTCCCTCTGGGAGTCACCATCGCTAGCTGCGCTCTATTCGGAGTCACCTTCCGATACACAATACGAAGGGACTTGGACGATGCTCATCTCAAGACCGGAGCGCCTGCAGCATTCGGAGTTGTCAAAGGGCTTGCTACACTGGATGGCGGACAGCCTTTGGAACTGAATGCCGGTAGCTTCTTTTCACATGCTTTTGATGGCGCGATTTACGTGTCTCAGAGTCTTTTTATTTTTCTTTCTGCTGCTGTTGCTCTGGATTATTGTTTTAAGACAGGGCTATTGAGTCCTTTTCCTATCAAGAAATCTGTATCAGGATCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

34.79

Weight (kDa)

6.17

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24090
fragaria_vesca FvH4_5g11010
malus_domestica MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica Prupe.5G128700_v2.0.a1
pyrus_communis pycom14g11050
rosa_chinensis RchiOBHm_Chr7g0186801
rosa_laevigata RLG00000004814
rosa_multiflora Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii Rroxscaffold_3G00267810
rosa_rugosa Rorug06G0476800
rosa_samantha Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana Rw7G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 857
AciI CCGC 7 cut(s) 96, 168, 186, 189, 501, 585, 801
AclWI GGATC 4 cut(s) 495, 646, 963, 976
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 661
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 4 cut(s) 196, 244, 332, 455
AleI CACNNNNGTG 1 cut(s) 629
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 294, 478, 873
AlwI GGATC 4 cut(s) 495, 646, 963, 976
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 6 cut(s) 173, 515, 572, 681, 761, 896
AspLEI GCGC 4 cut(s) 173, 686, 757, 857
AsuHPI GGTGA 3 cut(s) 67, 661, 691
AsuNHI GCTAGC 1 cut(s) 677
BamHI GGATCC 1 cut(s) 968
BanII GRGCYC 2 cut(s) 31, 240
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 6 cut(s) 160, 527, 584, 668, 773, 883
BccI CCATC 6 cut(s) 88, 266, 549, 680, 791, 845
BceAI ACGGC 1 cut(s) 455
BcoDI GTCTC 3 cut(s) 294, 478, 873
BfaI CTAG 3 cut(s) 380, 590, 678
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 2 cut(s) 174, 758
BisI GCNGC 9 cut(s) 169, 174, 187, 190, 516, 573, 682, 762, 897
BlsI GCNGC 9 cut(s) 170, 175, 188, 191, 517, 574, 683, 763, 898
BmiI GGNNCC 2 cut(s) 30, 970
BmsI GCATC 2 cut(s) 61, 724
BmtI GCTAGC 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 365, 728
BsaAI YACGTR 1 cut(s) 865
BsaBI GATNNNNATC 2 cut(s) 559, 738
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 749
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 661
Bse118I RCCGGY 2 cut(s) 593, 824
Bse1I ACTGG 2 cut(s) 169, 798
Bse3DI GCAATG 2 cut(s) 369, 608
Bse8I GATNNNNATC 2 cut(s) 559, 738
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 802
BseJI GATNNNNATC 2 cut(s) 559, 738
BseLI CCNNNNNNNGG 1 cut(s) 661
BseMI GCAATG 2 cut(s) 369, 608
BseMII CTCAG 7 cut(s) 197, 305, 315, 387, 636, 641, 884
BseNI ACTGG 2 cut(s) 169, 798
BseRI GAGGAG 4 cut(s) 47, 62, 82, 248
BseXI GCAGC 6 cut(s) 160, 527, 584, 668, 773, 883
Bsh1236I CGCG 1 cut(s) 857
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 4 cut(s) 177, 594, 750, 825
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 1 cut(s) 661
BsmAI GTCTC 3 cut(s) 294, 478, 873
BsmBI CGTCTC 2 cut(s) 294, 478
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 2 cut(s) 764, 826
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 31, 240
Bsp143I GATC 4 cut(s) 113, 487, 651, 968
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 7 cut(s) 96, 168, 186, 189, 501, 585, 801
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 7 cut(s) 198, 304, 316, 388, 637, 640, 883
BspFNI CGCG 1 cut(s) 857
BspLI GGNNCC 2 cut(s) 30, 970
BspMAI CTGCAG 1 cut(s) 763
BspOI GCTAGC 1 cut(s) 681
BspPI GGATC 4 cut(s) 495, 646, 963, 976
BsrDI GCAATG 2 cut(s) 369, 608
BsrFI RCCGGY 2 cut(s) 593, 824
BsrI ACTGG 2 cut(s) 169, 798
BssAI RCCGGY 2 cut(s) 593, 824
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 113, 487, 651, 968
BssNI GRCGYC 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 601
BstACI GRCGYC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 865
BstC8I GCNNGC 6 cut(s) 321, 595, 637, 679, 759, 786
BstDEI CTNAG 8 cut(s) 206, 291, 309, 324, 396, 627, 645, 870
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 802
BstFNI CGCG 1 cut(s) 857
BstH2I RGCGCY 2 cut(s) 174, 758
BstHHI GCGC 4 cut(s) 173, 686, 757, 857
BstKTI GATC 4 cut(s) 116, 490, 654, 971
BstMAI GTCTC 3 cut(s) 294, 478, 873
BstMBI GATC 4 cut(s) 113, 487, 651, 968
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 6 cut(s) 165, 467, 515, 683, 761, 902
BstNSI RCATGY 1 cut(s) 845
BstSFI CTRYAG 1 cut(s) 759
BstUI CGCG 1 cut(s) 857
BstV1I GCAGC 6 cut(s) 160, 527, 584, 668, 773, 883
BstX2I RGATCY 1 cut(s) 968
BstYI RGATCY 1 cut(s) 968
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 447
BtgZI GCGATG 2 cut(s) 33, 658
BtsCI GGATG 1 cut(s) 802
BtsIMutI CAGTG 3 cut(s) 203, 597, 791
Cac8I GCNNGC 6 cut(s) 321, 595, 637, 679, 759, 786
CfoI GCGC 4 cut(s) 173, 686, 757, 857
Cfr10I RCCGGY 2 cut(s) 593, 824
CseI GACGC 1 cut(s) 276
CviAII CATG 2 cut(s) 448, 842
DdeI CTNAG 8 cut(s) 206, 291, 309, 324, 396, 627, 645, 870
DpnI GATC 4 cut(s) 115, 489, 653, 970
DpnII GATC 4 cut(s) 113, 487, 651, 968
DraIII CACNNNGTG 1 cut(s) 209
EciI GGCGGA 3 cut(s) 516, 574, 816
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 2 cut(s) 31, 240
Eco32I GATATC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 238
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 2 cut(s) 31, 240
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 2 cut(s) 294, 478
FaeI CATG 2 cut(s) 451, 845
FaiI YATR 5 cut(s) 149, 449, 507, 566, 843
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 737
FatI CATG 2 cut(s) 447, 841
Fnu4HI GCNGC 9 cut(s) 169, 174, 187, 190, 516, 573, 682, 762, 897
FokI GGATG 1 cut(s) 809
FriOI GRGCYC 2 cut(s) 31, 240
Fsp4HI GCNGC 9 cut(s) 169, 174, 187, 190, 516, 573, 682, 762, 897
FspBI CTAG 3 cut(s) 380, 590, 678
GlaI GCGC 4 cut(s) 172, 685, 756, 856
GluI GCNGC 9 cut(s) 169, 174, 187, 190, 516, 573, 682, 762, 897
HaeII RGCGCY 2 cut(s) 174, 758
HaeIII GGCC 1 cut(s) 350
HapII CCGG 4 cut(s) 177, 594, 750, 825
HgaI GACGC 1 cut(s) 276
HhaI GCGC 4 cut(s) 173, 686, 757, 857
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 2 cut(s) 451, 845
Hin6I GCGC 4 cut(s) 171, 684, 755, 855
HinP1I GCGC 4 cut(s) 171, 684, 755, 855
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 5 cut(s) 86, 666, 696, 874, 937
HpaII CCGG 4 cut(s) 177, 594, 750, 825
HphI GGTGA 3 cut(s) 67, 661, 691
Hpy188I TCNGA 9 cut(s) 85, 294, 397, 436, 646, 695, 707, 770, 873
Hpy188III TCNNGA 5 cut(s) 241, 745, 908, 952, 966
HpyAV CCTTC 6 cut(s) 135, 193, 625, 631, 712, 714
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 2 cut(s) 466, 864
HpyCH4V TGCA 3 cut(s) 159, 515, 761
HpyF10VI GCNNNNNNNGC 6 cut(s) 165, 467, 515, 683, 761, 902
HpyF3I CTNAG 8 cut(s) 206, 291, 309, 324, 396, 627, 645, 870
HpySE526I ACGT 2 cut(s) 466, 864
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 451, 845
HspAI GCGC 4 cut(s) 171, 684, 755, 855
KroI GCCGGC 1 cut(s) 593
KroNI GCCGGC 1 cut(s) 595
Kzo9I GATC 4 cut(s) 113, 487, 651, 968
LmnI GCTCC 3 cut(s) 34, 235, 752
Lsp1109I GCAGC 6 cut(s) 160, 527, 584, 668, 773, 883
LweI GCATC 2 cut(s) 61, 724
MaeI CTAG 3 cut(s) 380, 590, 678
MaeII ACGT 2 cut(s) 466, 864
MaeIII GTNAC 2 cut(s) 667, 697
MalI GATC 4 cut(s) 115, 489, 653, 970
MboI GATC 4 cut(s) 113, 487, 651, 968
MboII GAAGA 6 cut(s) 94, 97, 108, 208, 401, 467
MflI RGATCY 1 cut(s) 968
MhlI GDGCHC 2 cut(s) 31, 240
MluCI AATT 1 cut(s) 973
MlyI GAGTC 4 cut(s) 675, 705, 883, 946
MmeI TCCRAC 1 cut(s) 258
MroNI GCCGGC 1 cut(s) 593
MseI TTAA 3 cut(s) 8, 921, 976
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 4 cut(s) 177, 594, 750, 825
Mva1269I GAATGC 2 cut(s) 764, 826
MvnI CGCG 1 cut(s) 857
MwoI GCNNNNNNNGC 6 cut(s) 165, 467, 515, 683, 761, 902
NaeI GCCGGC 1 cut(s) 595
NcoI CCATGG 1 cut(s) 447
NdeII GATC 4 cut(s) 113, 487, 651, 968
NgoMIV GCCGGC 1 cut(s) 593
NheI GCTAGC 1 cut(s) 677
NlaIII CATG 2 cut(s) 451, 845
NlaIV GGNNCC 2 cut(s) 30, 970
NmuCI GTSAC 2 cut(s) 667, 697
NspI RCATGY 1 cut(s) 845
OliI CACNNNNGTG 1 cut(s) 629
PctI GAATGC 2 cut(s) 764, 826
PdiI GCCGGC 1 cut(s) 595
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 9 cut(s) 170, 175, 188, 191, 517, 574, 683, 763, 898
PleI GAGTC 4 cut(s) 674, 704, 882, 945
PpsI GAGTC 4 cut(s) 674, 704, 882, 945
Ppu21I YACGTR 1 cut(s) 865
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 30, 970
PstI CTGCAG 1 cut(s) 763
PsuI RGATCY 1 cut(s) 968
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 8, 921, 976
SatI GCNGC 9 cut(s) 169, 174, 187, 190, 516, 573, 682, 762, 897
Sau3AI GATC 4 cut(s) 113, 487, 651, 968
SchI GAGTC 4 cut(s) 675, 705, 883, 946
SduI GDGCHC 2 cut(s) 31, 240
SfaNI GCATC 2 cut(s) 61, 724
SfcI CTRYAG 1 cut(s) 759
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 344, 743
SmoI CTYRAG 2 cut(s) 344, 743
Sse9I AATT 1 cut(s) 973
SsiI CCGC 7 cut(s) 96, 168, 186, 189, 501, 585, 801
SspMI CTAG 3 cut(s) 380, 590, 678
SstI GAGCTC 1 cut(s) 240
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 2 cut(s) 469, 867
TaqI TCGA 3 cut(s) 139, 270, 537
TaqII GACCGA 1 cut(s) 536
TasI AATT 1 cut(s) 973
TauI GCSGC 3 cut(s) 171, 189, 192
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 3 cut(s) 8, 921, 976
Tru9I TTAA 3 cut(s) 8, 921, 976
TscAI CASTG 3 cut(s) 210, 604, 798
TseFI GTSAC 2 cut(s) 667, 697
TseI GCWGC 6 cut(s) 173, 515, 572, 681, 761, 896
Tsp45I GTSAC 2 cut(s) 667, 697
TspDTI ATGAA 1 cut(s) 597
TspRI CASTG 3 cut(s) 210, 604, 798
XceI RCATGY 1 cut(s) 845
XspI CTAG 3 cut(s) 380, 590, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.