Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237483.1

Orthogroup ID

OG0014055

Physical Location & Seq

Genomic Coordinates Forward (+)

27 .. 653

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237483.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggtggaagaagccgaacgtgccctcacacaaactggggatcaattcggaaatggatatgcttctgcagagtctgagaatggggaaatcgacaaggatcaagagaagttggaatccataaaagcagcttcagttgcagcccttgttggcacagttgctggattgcccttctccttcactcaagtgaacagcagttctgagctgatactccctctggcaatcacctttattagctgtgcactattcggagttacattccgatacgccataaggagagacttggataatggtcaccttaagacaggagcacctgcagcttttggggttgtcaaaggtcttgctatgctggatggtggaagacctctggaactgaacactgatagcttaatatcacatgcttttgatggtgcagtgtatgtatctgaaaatctttttgtttttctttctgctgctgttgctctggattatttgtttaaggcgaggctcctgagtcctttccctatcaagaaatctatttcaggatccaactctatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

18.88

Weight (kDa)

4.88

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24090
fragaria_vesca	FvH4_5g11010
malus_domestica	MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica	Prupe.5G128700_v2.0.a1
pyrus_communis	pycom14g11050
rosa_chinensis	RchiOBHm_Chr7g0186801
rosa_laevigata	RLG00000004814
rosa_multiflora	Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii	Rroxscaffold_3G00267810
rosa_rugosa	Rorug06G0476800
rosa_samantha	Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana	Rw7G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AclWI	GGATC	4 cut(s)	48, 105, 516, 529
AcuI	CTGAAG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	296
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	128, 202, 234, 317, 384
AluI	AGCT	5 cut(s)	128, 202, 234, 317, 384
Alw21I	GWGCWC	2 cut(s)	241, 310
Alw26I	GTCTC	1 cut(s)	270
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	48, 105, 516, 529
AlwNI	CAGNNNCTG	2 cut(s)	74, 158
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	4 cut(s)	125, 137, 314, 449
AsuHPI	GGTGA	2 cut(s)	214, 284
BaeGI	GKGCMC	2 cut(s)	25, 241
BamHI	GGATCC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	241, 310
BbvI	GCAGC	4 cut(s)	137, 149, 326, 436
BccI	CCATC	2 cut(s)	344, 398
BcoDI	GTCTC	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	66, 312
BfrI	CTTAAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	4 cut(s)	126, 138, 315, 450
BlsI	GCNGC	4 cut(s)	127, 139, 316, 451
BmiI	GGNNCC	2 cut(s)	485, 523
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	66, 189, 479
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	2 cut(s)	25, 241
BseXI	GCAGC	4 cut(s)	137, 149, 326, 436
BsgI	GTGCAG	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	241, 310
BsmAI	GTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	25, 241, 310
Bsp143I	GATC	3 cut(s)	40, 97, 521
BspCNI	CTCAG	3 cut(s)	67, 190, 480
BspLI	GGNNCC	2 cut(s)	485, 523
BspMAI	CTGCAG	2 cut(s)	70, 316
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	4 cut(s)	48, 105, 516, 529
BspTI	CTTAAG	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	40, 97, 521
Bst4CI	ACNGT	1 cut(s)	154
BstAFI	CTTAAG	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	75, 198, 488
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	3 cut(s)	43, 100, 524
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	40, 97, 521
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 134, 314, 455
BstNSI	RCATGY	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	66, 312
BstSLI	GKGCMC	2 cut(s)	25, 241
BstV1I	GCAGC	4 cut(s)	137, 149, 326, 436
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	375, 417
BveI	ACCTGC	1 cut(s)	319
CaiI	CAGNNNCTG	2 cut(s)	74, 158
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	8 cut(s)	14, 128, 140, 202, 234, 317, 384, 484
CviKI_1	RGCY	8 cut(s)	14, 128, 140, 202, 234, 317, 384, 484
DdeI	CTNAG	3 cut(s)	75, 198, 488
DpnI	GATC	3 cut(s)	42, 99, 523
DpnII	GATC	3 cut(s)	40, 97, 521
Eco57I	CTGAAG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	290
FaeI	CATG	1 cut(s)	398
FaiI	YATR	8 cut(s)	60, 119, 269, 344, 396, 417, 533, 535
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	126, 138, 315, 450
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	126, 138, 315, 450
GluI	GCNGC	4 cut(s)	126, 138, 315, 450
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	3 cut(s)	71, 113, 490
HphI	GGTGA	2 cut(s)	214, 284
Hpy166II	GTNNAC	2 cut(s)	187, 239
Hpy188I	TCNGA	6 cut(s)	50, 76, 199, 248, 260, 424
Hpy188III	TCNNGA	6 cut(s)	101, 365, 461, 487, 505, 519
Hpy8I	GTNNAC	2 cut(s)	187, 239
HpyAV	CCTTC	2 cut(s)	178, 184
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	5 cut(s)	68, 137, 239, 314, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 134, 314, 455
HpyF3I	CTNAG	3 cut(s)	75, 198, 488
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	40, 97, 521
LmnI	GCTCC	2 cut(s)	305, 489
Lsp1109I	GCAGC	4 cut(s)	137, 149, 326, 436
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	250, 290
MalI	GATC	3 cut(s)	42, 99, 523
MboI	GATC	3 cut(s)	40, 97, 521
MboII	GAAGA	2 cut(s)	20, 369
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	25, 241, 310
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	80, 499
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	35, 222, 372, 474
MseI	TTAA	3 cut(s)	297, 386, 474
MslI	CAYNNNNRTG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	20, 134, 314, 455
NdeII	GATC	3 cut(s)	40, 97, 521
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	485, 523
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	182
PaqCI	CACCTGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	127, 139, 316, 451
PleI	GAGTC	2 cut(s)	79, 498
PpsI	GAGTC	2 cut(s)	79, 498
PspEI	GGTNACC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	485, 523
PstI	CTGCAG	2 cut(s)	70, 316
PstNI	CAGNNNCTG	2 cut(s)	74, 158
PsuI	RGATCY	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	297, 386, 474
SatI	GCNGC	4 cut(s)	126, 138, 315, 450
Sau3AI	GATC	3 cut(s)	40, 97, 521
SchI	GAGTC	2 cut(s)	80, 499
SduI	GDGCHC	3 cut(s)	25, 241, 310
SfcI	CTRYAG	2 cut(s)	66, 312
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	180, 296
SmoI	CTYRAG	2 cut(s)	180, 296
Sse9I	AATT	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	297, 386, 474
Tru9I	TTAA	3 cut(s)	297, 386, 474
TscAI	CASTG	2 cut(s)	382, 417
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	4 cut(s)	125, 137, 314, 449
Tsp45I	GTSAC	1 cut(s)	290
TspRI	CASTG	2 cut(s)	382, 417
Vha464I	CTTAAG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	237
XceI	RCATGY	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.