MD06G1117600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014055
Physical Location & Seq
Forward (+)
25645772 .. 25647230
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1117600.v1.1.491

Sequence Viewer

Length: 984 bp
ATGCCTTTAACCATCAAGCTCACTTGGGCTCCCTCCACAAACCGGGCTCCCTCCACAAACCCCACGTCTCATCTCCTCCCACCAAAACTCCACGCACCATCAGAATCCTCCTCTGCAGTCTTCCCCCGAGCTTCTCCTCCTTCCCCACCTCATCGACCCCTCATAGCAAAATGTACGACTGGCGGCGGCGCTGGAGAGGGCGGCGGCCTGAAGAAGGCACTGAGTGGCATTGTGGGAGAGCAAGTGGAGGAGCTCCTGAAAAGAGAAGAGAACAGGGAGTTGCTCGATGGGTTGGAAAAGGCGTCTCAGAGGGTTGAGAATGCCAAGAGAGAGCTGGCTGAGATTGAAAGGCAGGAACTTGAGGCCAAGCTTGTGAGGGATTACATTACCCAACTTGAAAGCAGAGCTTCTGAGATTGCAGAATGTCAAAAGGAGATATCAGAAGCGAAATCCATGGTTGAAGAAGCCGAACGTGCCCTCTCACAAGACGGGGATCAACTCGGAGACGGATATGCTTCTGCAGAGACCGAAAATAAGGAGATAGACAAGGATAAAGAGAGATGGCAATCGATCAAGGCAGCTTCAGTTTCCGCCCTTGTCGGCACCGTTGCCGGATTGCCCTTCTCCTTCACTCAAGTAGCAAGCATTTCTGAGCTGATCCTCCCTCTGGGAGTCACCTTCGCTAGCTGCGCTCTATTTGGAGTCACGTTTCGATACACATTACGTAGAGACTTTGACAACGTTCAACTCAAGACCGGAGCGCCTGCAGCCTTCGGTGTTGTCAAAGGGCTTGCTACACTGGATGGTGGAAAGCCTTTGGAACTGAATGCTGGTAGCTTCTTATCACATGCTTTTGATGGAGCGATTTACGTATCTCAGAGTCTTTTTGTTTTTCTTTCTGCTGCTGTTGCTCTGGATTATTGTTTTAAGACGGGGCTCTTGAGTCCCTTTCCTATCAAGAAATCTGTACGGGGATCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

35.06

Weight (kDa)

5.76

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24090
fragaria_vesca FvH4_5g11010
malus_domestica MD06G1117600.v1.1 MD14G1125000.v1.1
prunus_persica Prupe.5G128700_v2.0.a1
pyrus_communis pycom14g11050
rosa_chinensis RchiOBHm_Chr7g0186801
rosa_laevigata RLG00000004814
rosa_multiflora Rmu_co8237483.1_g000001 Rmu_ssc0000024.1_g000042
rosa_roxburghii Rroxscaffold_3G00267810
rosa_rugosa Rorug06G0476800
rosa_samantha Rh7AG063700 Rh7BG080200 Rh7CG083800 Rh7DG084700
rosa_wichuraiana Rw7G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 602
AciI CCGC 5 cut(s) 183, 186, 201, 204, 591
AclI AACGTT 1 cut(s) 741
AclWI GGATC 4 cut(s) 501, 652, 969, 982
AcuI CTGAAG 2 cut(s) 230, 567
AcyI GRCGYC 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 224
AfaI GTAC 2 cut(s) 175, 969
AfiI CCNNNNNNNGG 3 cut(s) 42, 214, 667
AgsI TTSAA 4 cut(s) 347, 398, 461, 746
AjiI CACGTC 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 5 cut(s) 72, 309, 498, 518, 723
AlwI GGATC 4 cut(s) 501, 652, 969, 982
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 2 cut(s) 205, 363
ApeKI GCWGC 4 cut(s) 578, 687, 767, 902
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 3 cut(s) 191, 692, 763
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 667
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 478
BamHI GGATCC 1 cut(s) 974
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 4 cut(s) 31, 49, 255, 939
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 590, 674, 779, 889
BccI CCATC 6 cut(s) 20, 106, 281, 555, 797, 851
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 5 cut(s) 72, 309, 498, 518, 723
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 3 cut(s) 114, 519, 765
BfoI RGCGCY 2 cut(s) 192, 764
BisI GCNGC 8 cut(s) 184, 187, 202, 205, 579, 688, 768, 903
BlsI GCNGC 8 cut(s) 185, 188, 203, 206, 580, 689, 769, 904
Bme1390I CCNGG 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 66
BmiI GGNNCC 4 cut(s) 30, 48, 604, 976
BmrFI CCNGG 1 cut(s) 44
BmtI GCTAGC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 4 cut(s) 380, 618, 734, 961
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 569
BsaAI YACGTR 2 cut(s) 725, 871
BsaBI GATNNNNATC 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 6 cut(s) 13, 43, 72, 102, 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 214, 667
Bse1I ACTGG 2 cut(s) 184, 804
Bse8I GATNNNNATC 1 cut(s) 565
BseCI ATCGAT 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 1 cut(s) 808
BseJI GATNNNNATC 1 cut(s) 565
BseLI CCNNNNNNNGG 3 cut(s) 42, 214, 667
BseMII CTCAG 6 cut(s) 212, 320, 330, 402, 642, 890
BseNI ACTGG 2 cut(s) 184, 804
BseRI GAGGAG 4 cut(s) 65, 100, 126, 263
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 4 cut(s) 590, 674, 779, 889
BshFI GGCC 2 cut(s) 207, 365
BshNI GGYRCC 1 cut(s) 602
BshVI ATCGAT 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 43, 612, 756
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 3 cut(s) 42, 214, 667
BsmAI GTCTC 5 cut(s) 72, 309, 498, 518, 723
BsmBI CGTCTC 3 cut(s) 72, 309, 498
BsmFI GGGAC 1 cut(s) 930
BsmI GAATGC 2 cut(s) 325, 832
BsnI GGCC 2 cut(s) 207, 365
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 5 cut(s) 31, 49, 255, 478, 939
Bsp143I GATC 4 cut(s) 493, 570, 657, 974
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 5 cut(s) 183, 186, 201, 204, 591
BspANI GGCC 2 cut(s) 207, 365
BspCNI CTCAG 6 cut(s) 213, 319, 331, 403, 643, 889
BspDI ATCGAT 1 cut(s) 569
BspLI GGNNCC 4 cut(s) 30, 48, 604, 976
BspMAI CTGCAG 3 cut(s) 118, 523, 769
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 4 cut(s) 501, 652, 969, 982
BspT107I GGYRCC 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 518
BsrI ACTGG 2 cut(s) 184, 804
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 4 cut(s) 493, 570, 657, 974
BssNI GRCGYC 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 302
BstBAI YACGTR 2 cut(s) 725, 871
BstC8I GCNNGC 5 cut(s) 336, 643, 685, 765, 792
BstDEI CTNAG 6 cut(s) 221, 306, 339, 411, 651, 876
BstDSI CCRYGG 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 808
BstH2I RGCGCY 2 cut(s) 192, 764
BstHHI GCGC 3 cut(s) 191, 692, 763
BstKTI GATC 4 cut(s) 496, 573, 660, 977
BstMAI GTCTC 5 cut(s) 72, 309, 498, 518, 723
BstMBI GATC 4 cut(s) 493, 570, 657, 974
BstMWI GCNNNNNNNGC 4 cut(s) 473, 689, 767, 908
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 3 cut(s) 114, 519, 765
BstSLI GKGCMC 1 cut(s) 478
BstSNI TACGTA 2 cut(s) 725, 871
BstV1I GCAGC 4 cut(s) 590, 674, 779, 889
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 974
BstYI RGATCY 1 cut(s) 974
Bsu15I ATCGAT 1 cut(s) 569
BsuRI GGCC 2 cut(s) 207, 365
BsuTUI ATCGAT 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 218, 797
Cac8I GCNNGC 5 cut(s) 336, 643, 685, 765, 792
CfoI GCGC 3 cut(s) 191, 692, 763
ClaI ATCGAT 1 cut(s) 569
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 174, 968
CviAII CATG 2 cut(s) 454, 848
CviQI GTAC 2 cut(s) 174, 968
DdeI CTNAG 6 cut(s) 221, 306, 339, 411, 651, 876
DpnI GATC 4 cut(s) 495, 572, 659, 976
DpnII GATC 4 cut(s) 493, 570, 657, 974
DraIII CACNNNGTG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 580
Ecl136II GAGCTC 1 cut(s) 253
Eco105I TACGTA 2 cut(s) 725, 871
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 4 cut(s) 31, 49, 255, 939
Eco31I GGTCTC 1 cut(s) 518
Eco32I GATATC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 230, 567
Eco88I CYCGRG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRV GATATC 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 4 cut(s) 31, 49, 255, 939
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 3 cut(s) 72, 309, 498
FaeI CATG 2 cut(s) 457, 851
FaiI YATR 4 cut(s) 164, 455, 513, 849
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 930
FatI CATG 2 cut(s) 453, 847
Fnu4HI GCNGC 8 cut(s) 184, 187, 202, 205, 579, 688, 768, 903
FokI GGATG 1 cut(s) 815
FriOI GRGCYC 4 cut(s) 31, 49, 255, 939
Fsp4HI GCNGC 8 cut(s) 184, 187, 202, 205, 579, 688, 768, 903
FspBI CTAG 1 cut(s) 684
GlaI GCGC 3 cut(s) 190, 691, 762
GluI GCNGC 8 cut(s) 184, 187, 202, 205, 579, 688, 768, 903
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 2 cut(s) 192, 764
HaeIII GGCC 2 cut(s) 207, 365
HapII CCGG 3 cut(s) 43, 612, 756
HgaI GACGC 1 cut(s) 291
HhaI GCGC 3 cut(s) 191, 692, 763
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 2 cut(s) 457, 851
Hin6I GCGC 3 cut(s) 189, 690, 761
HinP1I GCGC 3 cut(s) 189, 690, 761
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 5 cut(s) 104, 672, 702, 880, 943
HpaII CCGG 3 cut(s) 43, 612, 756
HphI GGTGA 1 cut(s) 667
Hpy188I TCNGA 7 cut(s) 103, 309, 412, 442, 503, 652, 879
Hpy188III TCNNGA 5 cut(s) 256, 751, 914, 940, 958
HpyAV CCTTC 6 cut(s) 150, 208, 631, 637, 688, 781
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 6 cut(s) 65, 472, 707, 724, 741, 870
HpyCH4V TGCA 4 cut(s) 116, 419, 521, 767
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 689, 767, 908
HpyF3I CTNAG 6 cut(s) 221, 306, 339, 411, 651, 876
HpySE526I ACGT 6 cut(s) 65, 472, 707, 724, 741, 870
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 2 cut(s) 457, 851
HspAI GCGC 3 cut(s) 189, 690, 761
Kzo9I GATC 4 cut(s) 493, 570, 657, 974
LmnI GCTCC 6 cut(s) 34, 52, 250, 258, 758, 860
Lsp1109I GCAGC 4 cut(s) 590, 674, 779, 889
MaeI CTAG 1 cut(s) 684
MaeII ACGT 6 cut(s) 65, 472, 707, 724, 741, 870
MaeIII GTNAC 2 cut(s) 673, 703
MalI GATC 4 cut(s) 495, 572, 659, 976
MboI GATC 4 cut(s) 493, 570, 657, 974
MboII GAAGA 4 cut(s) 112, 223, 278, 473
MflI RGATCY 1 cut(s) 974
MhlI GDGCHC 5 cut(s) 31, 49, 255, 478, 939
MluCI AATT 1 cut(s) 979
MlyI GAGTC 4 cut(s) 681, 711, 889, 952
MmeI TCCRAC 1 cut(s) 273
MseI TTAA 3 cut(s) 8, 927, 982
MspI CCGG 3 cut(s) 43, 612, 756
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 2 cut(s) 325, 832
MwoI GCNNNNNNNGC 4 cut(s) 473, 689, 767, 908
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 453
NdeII GATC 4 cut(s) 493, 570, 657, 974
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 2 cut(s) 457, 851
NlaIV GGNNCC 4 cut(s) 30, 48, 604, 976
NmuCI GTSAC 2 cut(s) 673, 703
NspI RCATGY 1 cut(s) 851
PctI GAATGC 2 cut(s) 325, 832
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 8 cut(s) 185, 188, 203, 206, 580, 689, 769, 904
PleI GAGTC 4 cut(s) 680, 710, 888, 951
PpsI GAGTC 4 cut(s) 680, 710, 888, 951
Ppu21I YACGTR 2 cut(s) 725, 871
Psp124BI GAGCTC 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 741
PspN4I GGNNCC 4 cut(s) 30, 48, 604, 976
PstI CTGCAG 3 cut(s) 118, 523, 769
PsuI RGATCY 1 cut(s) 974
RsaI GTAC 2 cut(s) 175, 969
RsaNI GTAC 2 cut(s) 174, 968
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 8, 927, 982
SatI GCNGC 8 cut(s) 184, 187, 202, 205, 579, 688, 768, 903
Sau3AI GATC 4 cut(s) 493, 570, 657, 974
SchI GAGTC 4 cut(s) 681, 711, 889, 952
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 5 cut(s) 31, 49, 255, 478, 939
SfcI CTRYAG 3 cut(s) 114, 519, 765
SmlI CTYRAG 4 cut(s) 359, 633, 749, 940
SmoI CTYRAG 4 cut(s) 359, 633, 749, 940
SnaBI TACGTA 2 cut(s) 725, 871
Sse9I AATT 1 cut(s) 979
SsiI CCGC 5 cut(s) 183, 186, 201, 204, 591
SspMI CTAG 1 cut(s) 684
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 6 cut(s) 68, 475, 710, 727, 744, 873
TaqI TCGA 4 cut(s) 154, 285, 569, 712
TaqII GACCGA 1 cut(s) 542
TasI AATT 1 cut(s) 979
TauI GCSGC 4 cut(s) 186, 189, 204, 207
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 3 cut(s) 8, 927, 982
Tru9I TTAA 3 cut(s) 8, 927, 982
TscAI CASTG 2 cut(s) 225, 804
TseFI GTSAC 2 cut(s) 673, 703
TseI GCWGC 4 cut(s) 578, 687, 767, 902
Tsp45I GTSAC 2 cut(s) 673, 703
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 225, 804
XagI CCTNNNNNAGG 1 cut(s) 212
XceI RCATGY 1 cut(s) 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XspI CTAG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.