AT4G24265

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014606
Physical Location & Seq
Reverse (-)
12580559 .. 12581251
693 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24265.1

Sequence Viewer

Length: 423 bp
ATGAAGAAGCTCACGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCATCTCAGCCTCACCATTGCTCTTGTGAGTACTCTTCCACGGCAGTAGCGGTGTTGGTTGAGCCCACAGCGCCTCCTCTTCCGTATTGGTTCGATGAGACTCGGAGTCTTTGTCCCCCAGAGACATCATCATTTCCTTGGACTACTCATCACTTACCTCACCAACAAGAAGAAACCATCGTTGAAGCAACCCCGTTGTTGTCTCAAGTGTCTGATCTTCGCATCTACCAGTCTTATCAACAGTACATGGTGCCGAATCCAACTAGTAACGTCCACTTTGTAGAACCAGCTACAGCAAAGAGATCAGTGGGAATATTCGGTTGTGTCATCGAGTTAAGTTCGAGTCTAGTTCGTTGTTTCATACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.98

Weight (kDa)

8.57

Isoelectric Point (pI)

72.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 1 cut(s) 104
AfaI GTAC 2 cut(s) 86, 299
AgsI TTSAA 1 cut(s) 239
AhdI GACNNNNNGTC 1 cut(s) 159
AhlI ACTAGT 1 cut(s) 317
AluBI AGCT 3 cut(s) 10, 50, 344
AluI AGCT 3 cut(s) 10, 50, 344
Alw26I GTCTC 3 cut(s) 146, 170, 261
AspLEI GCGC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 59, 206
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 120
BccI CCATC 2 cut(s) 64, 239
BceAI ACGGC 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 146, 170, 261
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 2 cut(s) 318, 401
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 86
BmeRI GACNNNNNGTC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 93, 191
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 151, 181
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 93, 191
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 3 cut(s) 146, 170, 261
BsmFI GGGAC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 268, 356
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 93, 191
BssMI GATC 2 cut(s) 268, 356
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 297, 420
Bst6I CTCTTC 3 cut(s) 26, 94, 138
BstC8I GCNNGC 2 cut(s) 48, 52
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 2 cut(s) 271, 359
BstMAI GTCTC 3 cut(s) 146, 170, 261
BstMBI GATC 2 cut(s) 268, 356
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 48, 52
CfoI GCGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 85, 298
CviAII CATG 1 cut(s) 301
CviJI RGCY 5 cut(s) 10, 50, 64, 118, 344
CviKI_1 RGCY 5 cut(s) 10, 50, 64, 118, 344
CviQI GTAC 2 cut(s) 85, 298
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 270, 358
DpnII GATC 2 cut(s) 268, 356
DriI GACNNNNNGTC 1 cut(s) 159
Eam1104I CTCTTC 3 cut(s) 26, 94, 138
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 3 cut(s) 26, 94, 138
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 304
FaiI YATR 2 cut(s) 302, 416
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 2 cut(s) 318, 401
GlaI GCGC 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 128
HhaI GCGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 4 cut(s) 154, 160, 310, 397
HphI GGTGA 2 cut(s) 59, 206
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 159, 268
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 297, 420
HpyCH4IV ACGT 3 cut(s) 14, 40, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 3 cut(s) 14, 40, 324
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 268, 356
LpnPI CCDG 4 cut(s) 4, 186, 296, 354
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 318, 401
MaeII ACGT 3 cut(s) 14, 40, 324
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 270, 358
MboI GATC 2 cut(s) 268, 356
MboII GAAGA 6 cut(s) 16, 43, 81, 125, 236, 263
MhlI GDGCHC 1 cut(s) 120
MlyI GAGTC 3 cut(s) 148, 169, 406
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 5 cut(s) 27, 75, 138, 141, 222
MseI TTAA 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 2 cut(s) 268, 356
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 310
PleI GAGTC 3 cut(s) 148, 168, 405
PpsI GAGTC 3 cut(s) 148, 168, 405
PspN4I GGNNCC 1 cut(s) 306
RsaI GTAC 2 cut(s) 86, 299
RsaNI GTAC 2 cut(s) 85, 298
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 2 cut(s) 268, 356
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 3 cut(s) 148, 169, 406
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 12, 17, 43, 52, 214, 327, 346
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SpeI ACTAGT 1 cut(s) 317
SsiI CCGC 1 cut(s) 104
SspI AATATT 1 cut(s) 369
SspMI CTAG 2 cut(s) 318, 401
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 297, 420
TaiI ACGT 3 cut(s) 17, 43, 327
TaqI TCGA 3 cut(s) 147, 384, 395
TatI WGTACW 2 cut(s) 84, 297
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 366
TspDTI ATGAA 2 cut(s) 17, 403
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 366
XspI CTAG 2 cut(s) 318, 401
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.