Prupe.1G585100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014606
Physical Location & Seq
Reverse (-)
47493344 .. 47493901
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G585100.1

Sequence Viewer

Length: 558 bp
ATGATAAAAGCTGTGAAGAAGCTCAAGTTTTGGTCAAGAAAGAAGAGAAAAAAGAAAACTCTCCACCACCAACCCTATTATCCTCCTCCACCACCAACACGGCCAGCACCGCTGCCACCCGGACCCAGGCATCATTGCTGCTCATGCTCATCGTCCACCTACTCAACTCAGCCCTCAGCTCCACCCTTACCTCCATGGCTGGATGCCGAGTACACCCATGAGGCTCTTTTGGCACCTCAAGTCCAACCTGCCCCAGAATTTGGCTACCAAGCAGATCCAAGACAACAAGAACCTACTATGAAAACCAATGCAGACAGTGGCACCACCAGCACCAGCAGTCCACTGTATCTCTATCCAACCTCATCTTATCAGCAATACATGGTTCCAGATCCTGTGTATGGAGTACCAATTGCACAAACACAAACACAAACACAAACACAAACACCAAGAGCCACAACAAGGGAGAGATCCGCTGCTGGGGGGGTCTTCGGTTGTGTTGTTGACTTTGGCATCCGTTTCTTTCGTTGTTTCTGTCCCTGTTTTCACATTGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.77

Weight (kDa)

9.38

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 2 cut(s) 232, 320
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 2 cut(s) 110, 471
AclWI GGATC 3 cut(s) 269, 383, 462
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 2 cut(s) 212, 405
AfiI CCNNNNNNNGG 5 cut(s) 126, 260, 398, 459, 477
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 3 cut(s) 11, 22, 179
AluI AGCT 3 cut(s) 11, 22, 179
AlwI GGATC 3 cut(s) 269, 383, 462
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 112, 138, 473
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 2 cut(s) 232, 320
BbsI GAAGAC 1 cut(s) 478
BbvCI CCTCAGC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 99, 125, 460
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 127
BcnI CCSGG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 3 cut(s) 113, 139, 474
BlsI GCNGC 3 cut(s) 114, 140, 475
Bme1390I CCNGG 2 cut(s) 120, 127
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 4 cut(s) 124, 234, 322, 384
BmrFI CCNGG 2 cut(s) 120, 127
BmsI GCATC 3 cut(s) 139, 193, 519
BpiI GAAGAC 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 8, 222
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 125, 194
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 260, 398, 459, 477
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 125, 194
BseGI GGATG 2 cut(s) 208, 510
BseLI CCNNNNNNNGG 5 cut(s) 126, 260, 398, 459, 477
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 182, 189
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 99, 125, 460
BseYI CCCAGC 1 cut(s) 476
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 2 cut(s) 232, 320
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 5 cut(s) 126, 260, 398, 459, 477
BsmFI GGGAC 1 cut(s) 519
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 3 cut(s) 274, 388, 467
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 2 cut(s) 110, 471
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 181, 188
BspLI GGNNCC 4 cut(s) 124, 234, 322, 384
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 3 cut(s) 269, 383, 462
BspT107I GGYRCC 2 cut(s) 232, 320
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 125, 194
BssMI GATC 3 cut(s) 274, 388, 467
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 317, 345
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 168, 175
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 208, 510
BstKTI GATC 3 cut(s) 277, 391, 470
BstMBI GATC 3 cut(s) 274, 388, 467
BstMWI GCNNNNNNNGC 4 cut(s) 109, 144, 230, 327
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 118, 125
BstV1I GCAGC 3 cut(s) 99, 125, 460
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 3 cut(s) 274, 388, 467
BstYI RGATCY 3 cut(s) 274, 388, 467
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 208, 510
BtsIMutI CAGTG 2 cut(s) 322, 341
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 211, 404
CviAII CATG 4 cut(s) 144, 195, 218, 379
CviJI RGCY 9 cut(s) 11, 22, 103, 172, 179, 199, 224, 264, 452
CviKI_1 RGCY 9 cut(s) 11, 22, 103, 172, 179, 199, 224, 264, 452
CviQI GTAC 2 cut(s) 211, 404
DdeI CTNAG 2 cut(s) 168, 175
DpnI GATC 3 cut(s) 276, 390, 469
DpnII GATC 3 cut(s) 274, 388, 467
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 147, 198, 221, 382
FaiI YATR 6 cut(s) 145, 196, 219, 299, 380, 399
FaqI GGGAC 1 cut(s) 519
FatI CATG 4 cut(s) 143, 194, 217, 378
Fnu4HI GCNGC 3 cut(s) 113, 139, 474
FokI GGATG 2 cut(s) 215, 497
Fsp4HI GCNGC 3 cut(s) 113, 139, 474
GluI GCNGC 3 cut(s) 113, 139, 474
GsaI CCCAGC 1 cut(s) 480
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 120
Hin1II CATG 4 cut(s) 147, 198, 221, 382
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HpaII CCGG 1 cut(s) 120
Hpy166II GTNNAC 4 cut(s) 156, 213, 341, 502
Hpy188III TCNNGA 2 cut(s) 36, 386
Hpy8I GTNNAC 4 cut(s) 156, 213, 341, 502
HpyCH4III ACNGT 2 cut(s) 317, 345
HpyCH4V TGCA 2 cut(s) 311, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 144, 230, 327
HpyF3I CTNAG 2 cut(s) 168, 175
Hsp92II CATG 4 cut(s) 147, 198, 221, 382
Kzo9I GATC 3 cut(s) 274, 388, 467
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 3 cut(s) 99, 125, 460
LweI GCATC 3 cut(s) 139, 193, 519
MalI GATC 3 cut(s) 276, 390, 469
MboI GATC 3 cut(s) 274, 388, 467
MboII GAAGA 3 cut(s) 28, 55, 478
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 3 cut(s) 274, 388, 467
MluCI AATT 2 cut(s) 257, 408
MmeI TCCRAC 2 cut(s) 268, 380
MnlI CCTC 7 cut(s) 93, 96, 184, 201, 214, 246, 370
MspA1I CMGCKG 2 cut(s) 112, 473
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 120, 127
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 4 cut(s) 109, 144, 230, 327
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 194
NdeII GATC 3 cut(s) 274, 388, 467
NlaIII CATG 4 cut(s) 147, 198, 221, 382
NlaIV GGNNCC 4 cut(s) 124, 234, 322, 384
NmeAIII GCCGAG 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 3 cut(s) 114, 140, 475
Psp6I CCWGG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 4 cut(s) 124, 234, 322, 384
PspPI GGNCC 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 3 cut(s) 274, 388, 467
RsaI GTAC 2 cut(s) 212, 405
RsaNI GTAC 2 cut(s) 211, 404
SatI GCNGC 3 cut(s) 113, 139, 474
Sau3AI GATC 3 cut(s) 274, 388, 467
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 120, 127
SetI ASST 9 cut(s) 13, 24, 161, 181, 193, 238, 250, 295, 362
SfaNI GCATC 3 cut(s) 139, 193, 519
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 23, 237
SmoI CTYRAG 2 cut(s) 23, 237
Sse9I AATT 2 cut(s) 257, 408
SsiI CCGC 2 cut(s) 110, 471
StyD4I CCNGG 2 cut(s) 118, 125
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 317, 345
TasI AATT 2 cut(s) 257, 408
TatI WGTACW 1 cut(s) 210
TscAI CASTG 2 cut(s) 322, 348
TseI GCWGC 3 cut(s) 112, 138, 473
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 322, 348
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.