Rroxscaffold_3G00238380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014606
Physical Location & Seq
Reverse (-)
26514634 .. 26519558
4925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238380.1

Sequence Viewer

Length: 714 bp
ATGAATCACCAGATCTTAGTTCCCTCTCAAGCTCGTCAAATTCCCACTCACCCACCTCCTCTGTTGAGTAGTCTTGACCAACCTTGCCAAACTCTGATTCGAGCTTTGCTAGGTCATCTTCAGGGTTACATCCCTGCCATGCAGTCTGGCCTGCCTGCTGCAGCTCTAGTTATTTTCTCTCTCTCGCTCTCTACCCCTGACAGCTGGATTGATTTGTTTTATTTTAATTGGGTTATAGATAATGGTGGGATGTACTATCTGTTACTCTCCACCCCTACCCATGAAGAGAAGGTTTCTCTACTAATGGCGGCTGCAACCTTTCAAGTGGCTGCAGTTGGTTCTCTCATTGATCTAGCCATTACCCAAGAACTCGCACAGTACCCACATGTTGCCAGGCCTAAATTACCACTATGGATGGATTATATTGAGCATACCAATGAGATTGACAATCTTCTGGCGCCTGAACTTCAGCGTCCTGCTCCAGAGCTAGCCTATCATCCACTTCTAGTTCCAAGCAAACAAGAAAGTTCTGCTCCTGCTACTTATCAGCAATATACGGTTCCGGTTCCGGTTCCAGATCCTGTGTATGGCGTACCAGTTGCACAAGCCCCCACAGCAGCAAGGCCGAGATCGGCTGGCTTCTTTGGATCTGTTGTTGACTATTTGTTTTGCTGCTTTTTTCCATGTTTTCGCATTCGTGAGGTCATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.22

Weight (kDa)

5.55

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 457
AciI CCGC 1 cut(s) 308
AclWI GGATC 2 cut(s) 572, 655
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 104, 452
AcyI GRCGYC 1 cut(s) 458
AfaI GTAC 3 cut(s) 254, 380, 594
AfiI CCNNNNNNNGG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 392
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 5 cut(s) 32, 104, 164, 204, 487
AluI AGCT 5 cut(s) 32, 104, 164, 204, 487
AlwI GGATC 2 cut(s) 572, 655
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 3 cut(s) 148, 395, 623
ApeKI GCWGC 6 cut(s) 158, 161, 311, 329, 617, 672
ApoI RAATTY 1 cut(s) 39
AspLEI GCGC 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 457
BbvI GCAGC 6 cut(s) 145, 173, 298, 316, 629, 659
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 394
BfaI CTAG 5 cut(s) 110, 167, 353, 488, 506
BfmI CTRYAG 2 cut(s) 159, 330
BfoI RGCGCY 1 cut(s) 461
BglII AGATCT 1 cut(s) 12
BisI GCNGC 7 cut(s) 159, 162, 309, 312, 330, 618, 673
BlsI GCNGC 7 cut(s) 160, 163, 310, 313, 331, 619, 674
Bme1390I CCNGG 1 cut(s) 394
BmiI GGNNCC 4 cut(s) 459, 561, 567, 573
BmrFI CCNGG 1 cut(s) 394
BmtI GCTAGC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 458
BsaWI WCCGGW 2 cut(s) 562, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 596
BseBI CCWGG 1 cut(s) 394
BseGI GGATG 4 cut(s) 129, 255, 420, 496
BseLI CCNNNNNNNGG 1 cut(s) 587
BseNI ACTGG 1 cut(s) 596
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 6 cut(s) 145, 173, 298, 316, 629, 659
BshFI GGCC 3 cut(s) 150, 397, 625
BshNI GGYRCC 1 cut(s) 457
BsiSI CCGG 2 cut(s) 563, 569
BslI CCNNNNNNNGG 1 cut(s) 587
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 3 cut(s) 150, 397, 625
Bsp143I GATC 5 cut(s) 12, 349, 577, 629, 647
BspACI CCGC 1 cut(s) 308
BspANI GGCC 3 cut(s) 150, 397, 625
BspLI GGNNCC 4 cut(s) 459, 561, 567, 573
BspMAI CTGCAG 2 cut(s) 163, 334
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 572, 655
BspT107I GGYRCC 1 cut(s) 457
BsrI ACTGG 1 cut(s) 596
BssMI GATC 5 cut(s) 12, 349, 577, 629, 647
BssNI GRCGYC 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 378, 559
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 458
BstC8I GCNNGC 4 cut(s) 152, 156, 489, 637
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 4 cut(s) 129, 255, 420, 496
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 5 cut(s) 15, 352, 580, 632, 650
BstMBI GATC 5 cut(s) 12, 349, 577, 629, 647
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 1 cut(s) 394
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 159, 330
BstV1I GCAGC 6 cut(s) 145, 173, 298, 316, 629, 659
BstX2I RGATCY 3 cut(s) 12, 577, 647
BstYI RGATCY 3 cut(s) 12, 577, 647
BsuRI GGCC 3 cut(s) 150, 397, 625
BtsCI GGATG 4 cut(s) 129, 255, 420, 496
Cac8I GCNNGC 4 cut(s) 152, 156, 489, 637
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 460
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 253, 379, 593
CviAII CATG 4 cut(s) 139, 281, 386, 684
CviQI GTAC 3 cut(s) 253, 379, 593
DdeI CTNAG 1 cut(s) 16
DinI GGCGCC 1 cut(s) 459
DpnI GATC 5 cut(s) 14, 351, 579, 631, 649
DpnII GATC 5 cut(s) 12, 349, 577, 629, 647
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 104, 452
EcoRII CCWGG 1 cut(s) 392
EgeI GGCGCC 1 cut(s) 459
EheI GGCGCC 1 cut(s) 459
FaeI CATG 4 cut(s) 142, 284, 389, 687
FatI CATG 4 cut(s) 138, 280, 385, 683
Fnu4HI GCNGC 7 cut(s) 159, 162, 309, 312, 330, 618, 673
FokI GGATG 4 cut(s) 116, 262, 427, 483
Fsp4HI GCNGC 7 cut(s) 159, 162, 309, 312, 330, 618, 673
FspBI CTAG 5 cut(s) 110, 167, 353, 488, 506
GlaI GCGC 1 cut(s) 459
GluI GCNGC 7 cut(s) 159, 162, 309, 312, 330, 618, 673
GsuI CTGGAG 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 3 cut(s) 150, 397, 625
HapII CCGG 2 cut(s) 563, 569
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 460
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 4 cut(s) 142, 284, 389, 687
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 2 cut(s) 4, 97
HpaII CCGG 2 cut(s) 563, 569
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 4 cut(s) 74, 482, 575, 698
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 378, 559
HpyCH4V TGCA 5 cut(s) 142, 161, 314, 332, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 4 cut(s) 142, 284, 389, 687
HspAI GCGC 1 cut(s) 458
KasI GGCGCC 1 cut(s) 457
Kzo9I GATC 5 cut(s) 12, 349, 577, 629, 647
LmnI GCTCC 2 cut(s) 484, 538
Lsp1109I GCAGC 6 cut(s) 145, 173, 298, 316, 629, 659
MaeI CTAG 5 cut(s) 110, 167, 353, 488, 506
MaeIII GTNAC 2 cut(s) 125, 261
MalI GATC 5 cut(s) 14, 351, 579, 631, 649
MboI GATC 5 cut(s) 12, 349, 577, 629, 647
MboII GAAGA 3 cut(s) 110, 296, 443
MflI RGATCY 3 cut(s) 12, 577, 647
MluCI AATT 3 cut(s) 39, 226, 401
Mly113I GGCGCC 1 cut(s) 458
MnlI CCTC 4 cut(s) 34, 66, 69, 694
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 2 cut(s) 563, 569
MspR9I CCNGG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 614
NarI GGCGCC 1 cut(s) 458
NdeII GATC 5 cut(s) 12, 349, 577, 629, 647
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 4 cut(s) 142, 284, 389, 687
NlaIV GGNNCC 4 cut(s) 459, 561, 567, 573
NmeAIII GCCGAG 1 cut(s) 651
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 385
PctI GAATGC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 4, 97
PkrI GCNGC 7 cut(s) 160, 163, 310, 313, 331, 619, 674
PluTI GGCGCC 1 cut(s) 461
PscI ACATGT 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 4 cut(s) 459, 561, 567, 573
PstI CTGCAG 2 cut(s) 163, 334
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 3 cut(s) 12, 577, 647
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 3 cut(s) 254, 380, 594
RsaNI GTAC 3 cut(s) 253, 379, 593
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 7 cut(s) 159, 162, 309, 312, 330, 618, 673
Sau3AI GATC 5 cut(s) 12, 349, 577, 629, 647
ScrFI CCNGG 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 159, 330
SfoI GGCGCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 39, 226, 401
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 308
SspDI GGCGCC 1 cut(s) 457
SspMI CTAG 5 cut(s) 110, 167, 353, 488, 506
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 378, 559
TaqI TCGA 1 cut(s) 100
TasI AATT 3 cut(s) 39, 226, 401
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 2 cut(s) 4, 97
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 6 cut(s) 158, 161, 311, 329, 617, 672
TspDTI ATGAA 2 cut(s) 17, 297
XapI RAATTY 1 cut(s) 39
XceI RCATGY 1 cut(s) 389
XspI CTAG 5 cut(s) 110, 167, 353, 488, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.