Rh7CG351000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014606
Physical Location & Seq
Reverse (-)
39878955 .. 39879269
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG351000.1

Sequence Viewer

Length: 315 bp
ATGGAATATACTGAGCATACCCATGAGATTGACAATCTTCTGGCGCCTGAACTACAGCGTCCTGCTCCAGAGCTAGCCTATCATCCACTTCCAGTTCCAAGCAAACAAGAAAGTACTGCTCCTGCTTTAAATTCAACCTCAACTTACCAGCAATATATGGTTCCGGTTCCAGATTCAGATCCTGTGTATGGCGTACCAGTTGCACAAGCCCCCATAGCAGCAAGGCCGAGATCTGCTGGCTTCTTTGGGTCTGTTGTTGACTATTTGTTTGGCTGCTTTTTTCCATGTTTTCGCATTCGTGAGGTTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.58

Weight (kDa)

5.17

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 115, 195
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 135
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 218, 273
ApoI RAATTY 1 cut(s) 130
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AspLEI GCGC 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 230, 260
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 47
BglII AGATCT 1 cut(s) 230
BisI GCNGC 2 cut(s) 219, 274
BlsI GCNGC 2 cut(s) 220, 275
BmcAI AGTACT 1 cut(s) 115
BmiI GGNNCC 3 cut(s) 45, 162, 168
BmtI GCTAGC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 92, 197
Bse8I GATNNNNATC 1 cut(s) 177
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 188
BseNI ACTGG 2 cut(s) 92, 197
BseXI GCAGC 2 cut(s) 230, 260
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 188
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 178, 230
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 3 cut(s) 45, 162, 168
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 92, 197
BssMI GATC 2 cut(s) 178, 230
BssNI GRCGYC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 75, 238
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 181, 233
BstMBI GATC 2 cut(s) 178, 230
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 230, 260
BstX2I RGATCY 2 cut(s) 178, 230
BstYI RGATCY 2 cut(s) 178, 230
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 75, 238
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 46
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 114, 194
CviAII CATG 2 cut(s) 23, 285
CviJI RGCY 6 cut(s) 73, 77, 209, 226, 240, 273
CviKI_1 RGCY 6 cut(s) 73, 77, 209, 226, 240, 273
CviQI GTAC 2 cut(s) 114, 194
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 45
DpnI GATC 2 cut(s) 180, 232
DpnII GATC 2 cut(s) 178, 230
DraI TTTAAA 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
FaeI CATG 2 cut(s) 26, 288
FaiI YATR 8 cut(s) 9, 18, 24, 156, 158, 189, 215, 286
FatI CATG 2 cut(s) 22, 284
Fnu4HI GCNGC 2 cut(s) 219, 274
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 219, 274
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 219, 274
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 26, 288
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 68, 170, 299
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 26, 288
HspAI GCGC 1 cut(s) 44
KasI GGCGCC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 178, 230
LmnI GCTCC 2 cut(s) 70, 124
Lsp1109I GCAGC 2 cut(s) 230, 260
MaeI CTAG 1 cut(s) 74
MalI GATC 2 cut(s) 180, 232
MboI GATC 2 cut(s) 178, 230
MboII GAAGA 1 cut(s) 29
MflI RGATCY 2 cut(s) 178, 230
MluCI AATT 1 cut(s) 130
Mly113I GGCGCC 1 cut(s) 44
MnlI CCTC 2 cut(s) 148, 295
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 215
NarI GGCGCC 1 cut(s) 44
NdeII GATC 2 cut(s) 178, 230
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 26, 288
NlaIV GGNNCC 3 cut(s) 45, 162, 168
NmeAIII GCCGAG 1 cut(s) 252
PctI GAATGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 220, 275
PluTI GGCGCC 1 cut(s) 47
PspN4I GGNNCC 3 cut(s) 45, 162, 168
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 178, 230
RsaI GTAC 2 cut(s) 115, 195
RsaNI GTAC 2 cut(s) 114, 194
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 219, 274
Sau3AI GATC 2 cut(s) 178, 230
ScaI AGTACT 1 cut(s) 115
SetI ASST 3 cut(s) 75, 140, 306
SfcI CTRYAG 1 cut(s) 53
SfoI GGCGCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 130
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 1 cut(s) 74
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 2 cut(s) 218, 273
XapI RAATTY 1 cut(s) 130
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.