Rorug07G0191300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014606
Physical Location & Seq
Reverse (-)
16274374 .. 16277045
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0191300.1

Sequence Viewer

Length: 1137 bp
ATGTTGCGGAAGGTCTGCGTGCTCAAGATGCTCAGCAACACCACGCTCGACTCGGTCCACGAGCTGCGGCGGAACCAGGTCAGGCGAACGGTCGGGTTATTCTACAGTCGGGTCGGGTCGCCGGTGGACGTGGGCGAGCAGATGTTCCTGAACGTGCTGAACGTGATCACCAACATGCTGTGGGGCGGGACGGTGCAGGACGAGGCCTCCGGGCTCGGGGCGGAGTTCCGGCAAGTGGTATCGGAGGGGACGGAGCTGCTGGCGAAGCCGAACGTTTCGGACTTTTATCCGGGTTTGGCCCGGTTTGACTTGCAAGGGGTGTTCAAGCAGATGGAGGGTTTAGGGAAGAGGATTGATGCGATATTCGAGAGAGTGATAGATCAACGGCTGAGGATGGAGAAGGAAAGCGCGAAGGAGGAGGGGAGTAAAGATTTTTTGACTTTTTTACTGCGGTTAAAAGAGGAGGGAGATTCCAAGACGCCGTTTACTATGACTCACCTCAAAGCCTTGTTTATGGATATGGTTGTGGGCGGGACGTACACATCCTCCAACACAATTGAATTTGCAATGTCGGAAGTTCTGAACAAACCAGAAGTGTTACAAAAAGTCCAGCAAGAATTAGAAGCAGTAGTTGGCAAAAACAGCGTTGTAGAAGAGTCTCACATTCACAAGCTACCGTACTTATATGCTGTGATGAAAGAAACACTGCGTTTGCACCCAGCCCTGCCTCTATTAGTCCCACATTGCCCAAGTGAGACATGTACTGTGGGGGGTTATACCATTCCAAAGGGGTCTAGGATTTTTGTTAATGTTTGGGCTATACATAGAGACCCTTCTAGTTGGGAAAACCCATTGGAGTTTGATCCAACTAGATTCTTGGATGGTAAATGGGATTACAGTGGGAGTGACTTCAAGTATTTTCCTTTTGGGTCCGGGAGAAGAATATGTGCAGGGATAGCATTGGCTGACCGGATGGTGATGCATTCGCTTGCTACACTGCTGCATTCTTTTGATTGGAAATTGCCACAGGGTGAGAAGTTGGATCTTTCGGAGAAGTTTGGTATTGTATTGAAGAAGAAGATATCTTTGGTTGCCATCCCAACTCCAAGGTTATCAGATCCAGCACTCTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.65

Weight (kDa)

6.78

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 360 1.5e-80 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 410
AciI CCGC 7 cut(s) 7, 67, 70, 186, 221, 451, 531
AclI AACGTT 1 cut(s) 273
AclWI GGATC 3 cut(s) 857, 1050, 1112
AcsI RAATTY 1 cut(s) 560
AcyI GRCGYC 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 1031
AfaI GTAC 3 cut(s) 539, 680, 763
AfiI CCNNNNNNNGG 2 cut(s) 216, 235
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 4 cut(s) 325, 560, 913, 1072
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 75
AjuI GAANNNNNNNTTGG 4 cut(s) 615, 647, 1070, 1102
AluBI AGCT 3 cut(s) 64, 256, 673
AluI AGCT 3 cut(s) 64, 256, 673
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 663, 749, 822
AlwI GGATC 3 cut(s) 857, 1050, 1112
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 204, 297
ApeKI GCWGC 3 cut(s) 64, 256, 1000
ApoI RAATTY 1 cut(s) 560
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 55, 298, 930
AsuC2I CCSGG 4 cut(s) 211, 291, 301, 934
AsuHPI GGTGA 4 cut(s) 160, 488, 988, 1043
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 55, 930
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 51, 243, 987
BccI CCATC 5 cut(s) 325, 388, 875, 967, 1103
BceAI ACGGC 2 cut(s) 401, 466
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 4 cut(s) 211, 291, 301, 934
BcoDI GTCTC 3 cut(s) 663, 749, 822
BfaI CTAG 3 cut(s) 795, 837, 870
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 4 cut(s) 65, 68, 257, 1001
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 4 cut(s) 66, 69, 258, 1002
Bme1390I CCNGG 5 cut(s) 77, 211, 291, 301, 934
Bme18I GGWCC 2 cut(s) 55, 930
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 55, 298, 930
BmiI GGNNCC 2 cut(s) 74, 931
BmrFI CCNGG 5 cut(s) 77, 211, 291, 301, 934
BmsI GCATC 3 cut(s) 18, 346, 969
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 4 cut(s) 211, 291, 301, 934
BsaHI GRCGYC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 822
BsaJI CCNNGG 1 cut(s) 1106
BsaWI WCCGGW 1 cut(s) 969
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 235
Bse118I RCCGGY 1 cut(s) 121
Bse3DI GCAATG 2 cut(s) 573, 742
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 1106
BseGI GGATG 5 cut(s) 399, 542, 886, 978, 1095
BseLI CCNNNNNNNGG 2 cut(s) 216, 235
BseMI GCAATG 2 cut(s) 573, 742
BseMII CTCAG 2 cut(s) 46, 380
BseRI GAGGAG 2 cut(s) 431, 476
BseXI GCAGC 3 cut(s) 51, 243, 987
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 2 cut(s) 215, 969
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 206, 299
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 7 cut(s) 122, 210, 229, 290, 301, 933, 970
BslFI GGGAC 4 cut(s) 202, 262, 547, 722
BslI CCNNNNNNNGG 2 cut(s) 216, 235
BsmAI GTCTC 3 cut(s) 663, 749, 822
BsmFI GGGAC 4 cut(s) 202, 262, 547, 722
BsmI GAATGC 2 cut(s) 982, 1003
BsnI GGCC 2 cut(s) 206, 299
Bso31I GGTCTC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 24, 216
Bsp143I GATC 5 cut(s) 165, 379, 862, 1042, 1117
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 7 cut(s) 7, 67, 70, 186, 221, 451, 531
BspANI GGCC 2 cut(s) 206, 299
BspCNI CTCAG 2 cut(s) 45, 381
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 74, 931
BspPI GGATC 3 cut(s) 857, 1050, 1112
BspTNI GGTCTC 1 cut(s) 822
BsrDI GCAATG 2 cut(s) 573, 742
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 1106
BssMI GATC 5 cut(s) 165, 379, 862, 1042, 1117
BssNI GRCGYC 1 cut(s) 479
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 1106
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 6 cut(s) 91, 107, 193, 678, 766, 899
Bst6I CTCTTC 2 cut(s) 341, 648
BstACI GRCGYC 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 20, 137, 261, 990
BstDEI CTNAG 2 cut(s) 32, 389
BstF5I GGATG 5 cut(s) 399, 542, 886, 978, 1095
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 5 cut(s) 168, 382, 865, 1045, 1120
BstMAI GTCTC 3 cut(s) 663, 749, 822
BstMBI GATC 5 cut(s) 165, 379, 862, 1042, 1117
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 4 cut(s) 28, 265, 642, 956
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 2 cut(s) 178, 762
BstSCI CCNGG 5 cut(s) 75, 209, 289, 299, 932
BstSFI CTRYAG 1 cut(s) 103
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 51, 243, 987
BstX2I RGATCY 2 cut(s) 1042, 1117
BstYI RGATCY 2 cut(s) 1042, 1117
BsuRI GGCC 2 cut(s) 206, 299
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 5 cut(s) 399, 542, 886, 978, 1095
BtsI GCAGTG 2 cut(s) 704, 995
BtsIMutI CAGTG 3 cut(s) 704, 904, 995
Cac8I GCNNGC 4 cut(s) 20, 137, 261, 990
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 55, 298, 930
CseI GACGC 1 cut(s) 487
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 3 cut(s) 538, 679, 762
CviAII CATG 2 cut(s) 175, 759
CviQI GTAC 3 cut(s) 538, 679, 762
DdeI CTNAG 2 cut(s) 32, 389
DpnI GATC 5 cut(s) 167, 381, 864, 1044, 1119
DpnII GATC 5 cut(s) 165, 379, 862, 1042, 1117
DraIII CACNNNGTG 1 cut(s) 1031
Eam1104I CTCTTC 2 cut(s) 341, 648
EarI CTCTTC 2 cut(s) 341, 648
EciI GGCGGA 2 cut(s) 85, 236
Eco130I CCWWGG 1 cut(s) 1106
Eco147I AGGCCT 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 822
Eco32I GATATC 1 cut(s) 1083
Eco47I GGWCC 2 cut(s) 55, 930
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 1083
EcoT14I CCWWGG 1 cut(s) 1106
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 1106
FaeI CATG 2 cut(s) 178, 762
FaqI GGGAC 4 cut(s) 202, 262, 547, 722
FatI CATG 2 cut(s) 174, 758
FauI CCCGC 2 cut(s) 179, 524
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 65, 68, 257, 1001
FokI GGATG 5 cut(s) 406, 529, 893, 985, 1082
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 4 cut(s) 65, 68, 257, 1001
FspBI CTAG 3 cut(s) 795, 837, 870
GlaI GCGC 1 cut(s) 409
GluI GCNGC 4 cut(s) 65, 68, 257, 1001
GsaI CCCAGC 1 cut(s) 722
HaeIII GGCC 2 cut(s) 206, 299
HapII CCGG 7 cut(s) 122, 210, 229, 290, 301, 933, 970
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 479
Hin1II CATG 2 cut(s) 178, 762
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 5 cut(s) 50, 470, 493, 656, 873
HpaII CCGG 7 cut(s) 122, 210, 229, 290, 301, 933, 970
HphI GGTGA 4 cut(s) 160, 488, 988, 1043
Hpy166II GTNNAC 4 cut(s) 58, 127, 486, 540
Hpy188I TCNGA 6 cut(s) 244, 280, 574, 582, 1051, 1117
Hpy188III TCNNGA 3 cut(s) 25, 148, 367
Hpy8I GTNNAC 4 cut(s) 58, 127, 486, 540
HpyAV CCTTC 4 cut(s) 4, 394, 406, 843
HpyCH4III ACNGT 6 cut(s) 91, 107, 193, 678, 766, 899
HpyCH4IV ACGT 5 cut(s) 129, 153, 162, 273, 536
HpyCH4V TGCA 7 cut(s) 196, 313, 566, 715, 950, 982, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 265, 642, 956
HpyF3I CTNAG 2 cut(s) 32, 389
HpySE526I ACGT 5 cut(s) 129, 153, 162, 273, 536
Hsp92I GRCGYC 1 cut(s) 479
Hsp92II CATG 2 cut(s) 178, 762
HspAI GCGC 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 5 cut(s) 165, 379, 862, 1042, 1117
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 3 cut(s) 51, 243, 987
LweI GCATC 3 cut(s) 18, 346, 969
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 3 cut(s) 795, 837, 870
MaeII ACGT 5 cut(s) 129, 153, 162, 273, 536
MaeIII GTNAC 2 cut(s) 597, 905
MalI GATC 5 cut(s) 167, 381, 864, 1044, 1119
MboI GATC 5 cut(s) 165, 379, 862, 1042, 1117
MboII GAAGA 6 cut(s) 358, 665, 951, 1084, 1087, 1090
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 2 cut(s) 1042, 1117
MhlI GDGCHC 2 cut(s) 24, 216
MluCI AATT 4 cut(s) 555, 560, 617, 1019
MlyI GAGTC 3 cut(s) 44, 487, 665
MmeI TCCRAC 4 cut(s) 552, 573, 890, 1020
Mph1103I ATGCAT 1 cut(s) 984
MseI TTAA 2 cut(s) 455, 807
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 7 cut(s) 122, 210, 229, 290, 301, 933, 970
MspR9I CCNGG 5 cut(s) 77, 211, 291, 301, 934
MunI CAATTG 1 cut(s) 555
Mva1269I GAATGC 2 cut(s) 982, 1003
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 4 cut(s) 28, 265, 642, 956
NciI CCSGG 4 cut(s) 211, 291, 301, 934
NdeII GATC 5 cut(s) 165, 379, 862, 1042, 1117
NlaIII CATG 2 cut(s) 178, 762
NlaIV GGNNCC 2 cut(s) 74, 931
NmuCI GTSAC 1 cut(s) 905
NsiI ATGCAT 1 cut(s) 984
NspI RCATGY 2 cut(s) 178, 762
PceI AGGCCT 1 cut(s) 206
PciI ACATGT 1 cut(s) 758
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 2 cut(s) 982, 1003
PfeI GAWTC 2 cut(s) 470, 873
PflFI GACNNNGTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 932
PkrI GCNGC 4 cut(s) 66, 69, 258, 1002
PleI GAGTC 3 cut(s) 44, 487, 664
PpsI GAGTC 3 cut(s) 44, 487, 664
PscI ACATGT 1 cut(s) 758
Psp1406I AACGTT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 74, 931
PspPI GGNCC 3 cut(s) 55, 298, 930
PsuI RGATCY 2 cut(s) 1042, 1117
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 3 cut(s) 539, 680, 763
RsaNI GTAC 3 cut(s) 538, 679, 762
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 455, 807
SatI GCNGC 4 cut(s) 65, 68, 257, 1001
Sau3AI GATC 5 cut(s) 165, 379, 862, 1042, 1117
Sau96I GGNCC 3 cut(s) 55, 298, 930
SchI GAGTC 3 cut(s) 44, 487, 665
ScrFI CCNGG 5 cut(s) 77, 211, 291, 301, 934
SduI GDGCHC 2 cut(s) 24, 216
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 3 cut(s) 18, 346, 969
SfcI CTRYAG 1 cut(s) 103
SgrAI CRCCGGYG 1 cut(s) 121
SinI GGWCC 2 cut(s) 55, 930
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 4 cut(s) 555, 560, 617, 1019
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 7 cut(s) 7, 67, 70, 186, 221, 451, 531
SspMI CTAG 3 cut(s) 795, 837, 870
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 5 cut(s) 75, 209, 289, 299, 932
StyI CCWWGG 1 cut(s) 1106
TaaI ACNGT 6 cut(s) 91, 107, 193, 678, 766, 899
TaiI ACGT 5 cut(s) 132, 156, 165, 276, 539
TaqI TCGA 2 cut(s) 48, 366
TaqII GACCGA 1 cut(s) 43
TasI AATT 4 cut(s) 555, 560, 617, 1019
TatI WGTACW 1 cut(s) 761
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 470, 873
Tru1I TTAA 2 cut(s) 455, 807
Tru9I TTAA 2 cut(s) 455, 807
TscAI CASTG 3 cut(s) 711, 904, 1002
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 3 cut(s) 64, 256, 1000
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 711, 904, 1002
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 55, 930
XapI RAATTY 1 cut(s) 560
XceI RCATGY 2 cut(s) 178, 762
XspI CTAG 3 cut(s) 795, 837, 870
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.