Rroxscaffold_3G00239710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014606
Physical Location & Seq
Forward (+)
30162807 .. 30163313
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239710.1

Sequence Viewer

Length: 507 bp
ATGATAAAAGCTGTGAAGAAGCTCAAGCTGTGGCCTAGAAAGAAGAGAAAAAGAAAGACTCGCCCTCCTCCTCCACCCTATGATCCTCCACCACCCCCACGACCACCCCGACATCAATGTCATTGTTGCTCCTCGTACACCGCCTCCTCCTCCTCAACAACTCAGCCGTCTGCACCACCTTTACCACCATGGATGGAATATACTGAGCATACCCATGAGATTGACAATCTTGTGGTGCCTGAACTACAGCGTCCTGCTCCAGAGCTAGCCTATCATCCACTTCCAGTTCCAAGCAAACAAGAAAGTACTGCTCCTGCTTTAAATTCAACCTCAACTTACCAGCAATATATGGTTCCGGTTCCAGATCCAGATCCTGTGTATGGCGTACCAGTTGCACAAGCCCCCATAGCAGCAAGGCCGAGATCTGCTGGCTTCTTTGGGTCTGTTGTTGACTATTTGTTTGGCTGCTTTTTTCCATGTTTTCGCATTCGTGAGGTTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.88

Weight (kDa)

9.48

Isoelectric Point (pI)

72.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 1 cut(s) 141
AclWI GGATC 3 cut(s) 77, 359, 365
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 3 cut(s) 137, 307, 387
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 1 cut(s) 327
AluBI AGCT 4 cut(s) 11, 22, 28, 265
AluI AGCT 4 cut(s) 11, 22, 28, 265
AlwI GGATC 3 cut(s) 77, 359, 365
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 2 cut(s) 32, 416
ApeKI GCWGC 2 cut(s) 410, 465
ApoI RAATTY 1 cut(s) 322
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AsuNHI GCTAGC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 422, 452
BccI CCATC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 151
BfaI CTAG 2 cut(s) 36, 266
BfmI CTRYAG 1 cut(s) 245
BglII AGATCT 1 cut(s) 422
BisI GCNGC 2 cut(s) 411, 466
BlsI GCNGC 2 cut(s) 412, 467
BmcAI AGTACT 1 cut(s) 307
BmiI GGNNCC 3 cut(s) 237, 354, 360
BmtI GCTAGC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 284, 389
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 198, 274
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 176, 195
BseNI ACTGG 2 cut(s) 284, 389
BseRI GAGGAG 6 cut(s) 57, 60, 121, 136, 139, 142
BseXI GCAGC 2 cut(s) 422, 452
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 2 cut(s) 34, 418
BshNI GGYRCC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 380
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 34, 418
Bsp143I GATC 4 cut(s) 82, 364, 370, 422
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 34, 418
BspCNI CTCAG 2 cut(s) 175, 196
BspLI GGNNCC 3 cut(s) 237, 354, 360
BspOI GCTAGC 1 cut(s) 269
BspPI GGATC 3 cut(s) 77, 359, 365
BspT107I GGYRCC 1 cut(s) 235
BsrI ACTGG 2 cut(s) 284, 389
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 4 cut(s) 82, 364, 370, 422
BssT1I CCWWGG 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 267, 430
BstDEI CTNAG 2 cut(s) 162, 204
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 198, 274
BstKTI GATC 4 cut(s) 85, 367, 373, 425
BstMBI GATC 4 cut(s) 82, 364, 370, 422
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 422, 452
BstX2I RGATCY 3 cut(s) 364, 370, 422
BstYI RGATCY 3 cut(s) 364, 370, 422
BsuRI GGCC 2 cut(s) 34, 418
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 198, 274
Cac8I GCNNGC 2 cut(s) 267, 430
CaiI CAGNNNCTG 1 cut(s) 374
CseI GACGC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 136, 306, 386
CviAII CATG 3 cut(s) 189, 215, 477
CviQI GTAC 3 cut(s) 136, 306, 386
DdeI CTNAG 2 cut(s) 162, 204
DpnI GATC 4 cut(s) 84, 366, 372, 424
DpnII GATC 4 cut(s) 82, 364, 370, 422
DraI TTTAAA 1 cut(s) 321
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 192, 218, 480
FatI CATG 3 cut(s) 188, 214, 476
Fnu4HI GCNGC 2 cut(s) 411, 466
FokI GGATG 2 cut(s) 205, 261
Fsp4HI GCNGC 2 cut(s) 411, 466
FspBI CTAG 2 cut(s) 36, 266
GluI GCNGC 2 cut(s) 411, 466
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 2 cut(s) 34, 418
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 239
Hin1II CATG 3 cut(s) 192, 218, 480
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 138, 451
Hpy188III TCNNGA 4 cut(s) 260, 362, 368, 491
Hpy8I GTNNAC 2 cut(s) 138, 451
HpyCH4V TGCA 2 cut(s) 173, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 162, 204
Hsp92II CATG 3 cut(s) 192, 218, 480
Kzo9I GATC 4 cut(s) 82, 364, 370, 422
LmnI GCTCC 3 cut(s) 134, 262, 316
Lsp1109I GCAGC 2 cut(s) 422, 452
MaeI CTAG 2 cut(s) 36, 266
MalI GATC 4 cut(s) 84, 366, 372, 424
MboI GATC 4 cut(s) 82, 364, 370, 422
MboII GAAGA 2 cut(s) 28, 55
MflI RGATCY 3 cut(s) 364, 370, 422
MluCI AATT 1 cut(s) 322
MlyI GAGTC 1 cut(s) 52
MseI TTAA 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 407
NcoI CCATGG 1 cut(s) 188
NdeII GATC 4 cut(s) 82, 364, 370, 422
NheI GCTAGC 1 cut(s) 265
NlaIII CATG 3 cut(s) 192, 218, 480
NlaIV GGNNCC 3 cut(s) 237, 354, 360
NmeAIII GCCGAG 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 1 cut(s) 486
PkrI GCNGC 2 cut(s) 412, 467
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 237, 354, 360
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 3 cut(s) 364, 370, 422
RsaI GTAC 3 cut(s) 137, 307, 387
RsaNI GTAC 3 cut(s) 136, 306, 386
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 2 cut(s) 411, 466
Sau3AI GATC 4 cut(s) 82, 364, 370, 422
ScaI AGTACT 1 cut(s) 307
SchI GAGTC 1 cut(s) 52
SetI ASST 7 cut(s) 13, 24, 30, 181, 267, 332, 498
SfcI CTRYAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 322
SsiI CCGC 1 cut(s) 141
SspMI CTAG 2 cut(s) 36, 266
StyI CCWWGG 1 cut(s) 188
TasI AATT 1 cut(s) 322
TatI WGTACW 1 cut(s) 305
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseI GCWGC 2 cut(s) 410, 465
XapI RAATTY 1 cut(s) 322
XspI CTAG 2 cut(s) 36, 266
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.