FvH4_5g28060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014606
Physical Location & Seq
Reverse (-)
19291189 .. 19291905
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28060.t1

Sequence Viewer

Length: 717 bp
ATGGGTTGGTTTGGTGTTTGTCAGTGGATGCTTAACGGCTATAAAATTGAAAAATTGAAAAGCAAAAAAGGGATCCTAGTCGTTGGAAAACATAGGCACCACCGCTCCTCCACATCTTTAAGACAAAGTTCAAGATACCATTCTCATTCTCATTTCCTCATCAATATTCCATTTCAAGCTCATGATCCAAATTCCTCTGGTAGCTTTGCAAAGGAGGAAGCGATGATAAAAGCTGTGAAGAAGCTCAAATTGTGGTCTAGAAAGAAGAAGAAAAGAAAGACTCATCCTCCTCCTCCACCCTATGATCCACCACCACCACCACCCCGACATCAGTGTCACTGTTGCTGCTCGTACACCACCTCCTCCTCCTCCTCAACGGCTCAGCCTTCCGCTCCACCTCTGCCACCATGGATGGATTATACTGAGCATAACCATGAGATTCTTCTGGCGCCTGACCTTCGGTGCCCTGCTCCAGAGCTAGCTTATCATCCACTTCCGGTTCCAAGCAAACAAGAAAGTTCTGCTCCTGCTTTGAATTTGAATCCTACCTCATCTTATCAGCAATATATGGTTCCAGATCCAGTTCATGTGTATGGCATACCAGTTACACAAGCTCCCACAGCAGCAAGGGAGAGATCTGCTGGCTTCTTTGGATGTGTTGTTGACTACTTGTTTCGCTTCTTTCCATGTTTTCGCATCCGTGAGGTTGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.95

Weight (kDa)

9.64

Isoelectric Point (pI)

64.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AccB1I GGYRCC 3 cut(s) 96, 448, 462
AccBSI CCGCTC 2 cut(s) 105, 392
AciI CCGC 2 cut(s) 103, 390
AclWI GGATC 5 cut(s) 67, 80, 179, 299, 572
AcsI RAATTY 2 cut(s) 190, 535
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 353
AgsI TTSAA 6 cut(s) 50, 58, 132, 176, 535, 541
AluBI AGCT 7 cut(s) 179, 204, 233, 244, 478, 482, 614
AluI AGCT 7 cut(s) 179, 204, 233, 244, 478, 482, 614
AlwI GGATC 5 cut(s) 67, 80, 179, 299, 572
ApeKI GCWGC 2 cut(s) 345, 623
ApoI RAATTY 2 cut(s) 190, 535
AspLEI GCGC 1 cut(s) 451
AsuNHI GCTAGC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 467
BamHI GGATCC 1 cut(s) 72
BanI GGYRCC 3 cut(s) 96, 448, 462
BbvI GCAGC 2 cut(s) 332, 635
BccI CCATC 1 cut(s) 406
BceAI ACGGC 2 cut(s) 52, 393
BfaI CTAG 3 cut(s) 77, 258, 479
BfoI RGCGCY 1 cut(s) 452
BglII AGATCT 1 cut(s) 635
BisI GCNGC 2 cut(s) 346, 624
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 2 cut(s) 347, 625
BmiI GGNNCC 6 cut(s) 74, 98, 450, 464, 501, 573
BmsI GCATC 2 cut(s) 18, 705
BmtI GCTAGC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 496
Bse1I ACTGG 2 cut(s) 581, 602
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 6 cut(s) 33, 283, 417, 487, 659, 696
BseMII CTCAG 2 cut(s) 395, 414
BseNI ACTGG 2 cut(s) 581, 602
BseRI GAGGAG 7 cut(s) 97, 279, 282, 352, 355, 358, 361
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 2 cut(s) 332, 635
BshNI GGYRCC 3 cut(s) 96, 448, 462
BsiSI CCGG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 5 cut(s) 72, 184, 304, 577, 635
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 2 cut(s) 103, 390
BspCNI CTCAG 2 cut(s) 394, 415
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 6 cut(s) 74, 98, 450, 464, 501, 573
BspOI GCTAGC 1 cut(s) 482
BspPI GGATC 5 cut(s) 67, 80, 179, 299, 572
BspT107I GGYRCC 3 cut(s) 96, 448, 462
BsrBI CCGCTC 2 cut(s) 105, 392
BsrI ACTGG 2 cut(s) 581, 602
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 5 cut(s) 72, 184, 304, 577, 635
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 480, 643
BstDEI CTNAG 3 cut(s) 381, 423, 711
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 6 cut(s) 33, 283, 417, 487, 659, 696
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 5 cut(s) 75, 187, 307, 580, 638
BstMBI GATC 5 cut(s) 72, 184, 304, 577, 635
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 332, 635
BstX2I RGATCY 3 cut(s) 72, 577, 635
BstYI RGATCY 3 cut(s) 72, 577, 635
BtgI CCRYGG 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 6 cut(s) 33, 283, 417, 487, 659, 696
BtsIMutI CAGTG 3 cut(s) 29, 337, 338
Cac8I GCNNGC 2 cut(s) 480, 643
CciI TCATGA 1 cut(s) 181
CfoI GCGC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 352
CviAII CATG 5 cut(s) 182, 408, 434, 587, 687
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 381, 423, 711
DinI GGCGCC 1 cut(s) 450
DpnI GATC 5 cut(s) 74, 186, 306, 579, 637
DpnII GATC 5 cut(s) 72, 184, 304, 577, 635
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 407
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 5 cut(s) 185, 411, 437, 590, 690
FatI CATG 5 cut(s) 181, 407, 433, 586, 686
Fnu4HI GCNGC 2 cut(s) 346, 624
FokI GGATG 6 cut(s) 40, 270, 424, 474, 666, 683
Fsp4HI GCNGC 2 cut(s) 346, 624
FspBI CTAG 3 cut(s) 77, 258, 479
GlaI GCGC 1 cut(s) 450
GluI GCNGC 2 cut(s) 346, 624
GsuI CTGGAG 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 452
HapII CCGG 1 cut(s) 497
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 5 cut(s) 185, 411, 437, 590, 690
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 3 cut(s) 280, 439, 541
HpaII CCGG 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 354, 664
Hpy188III TCNNGA 5 cut(s) 132, 182, 258, 473, 575
Hpy8I GTNNAC 2 cut(s) 354, 664
HpyAV CCTTC 2 cut(s) 396, 467
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 3 cut(s) 381, 423, 711
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 5 cut(s) 185, 411, 437, 590, 690
HspAI GCGC 1 cut(s) 449
KasI GGCGCC 1 cut(s) 448
Kzo9I GATC 5 cut(s) 72, 184, 304, 577, 635
LmnI GCTCC 5 cut(s) 110, 397, 475, 529, 619
Lsp1109I GCAGC 2 cut(s) 332, 635
LweI GCATC 2 cut(s) 18, 705
MaeI CTAG 3 cut(s) 77, 258, 479
MaeIII GTNAC 2 cut(s) 335, 604
MalI GATC 5 cut(s) 74, 186, 306, 579, 637
MbiI CCGCTC 2 cut(s) 105, 392
MboI GATC 5 cut(s) 72, 184, 304, 577, 635
MboII GAAGA 4 cut(s) 250, 277, 280, 434
MflI RGATCY 3 cut(s) 72, 577, 635
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 5 cut(s) 45, 53, 190, 248, 535
Mly113I GGCGCC 1 cut(s) 449
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 64
MseI TTAA 2 cut(s) 33, 119
MslI CAYNNNNRTG 2 cut(s) 432, 591
MspI CCGG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 620
NarI GGCGCC 1 cut(s) 449
NcoI CCATGG 1 cut(s) 407
NdeII GATC 5 cut(s) 72, 184, 304, 577, 635
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 5 cut(s) 185, 411, 437, 590, 690
NlaIV GGNNCC 6 cut(s) 74, 98, 450, 464, 501, 573
NmuCI GTSAC 1 cut(s) 335
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 2 cut(s) 439, 541
PkrI GCNGC 2 cut(s) 347, 625
PleI GAGTC 1 cut(s) 274
PluTI GGCGCC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 6 cut(s) 74, 98, 450, 464, 501, 573
PsuI RGATCY 3 cut(s) 72, 577, 635
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 432, 591
SaqAI TTAA 2 cut(s) 33, 119
SatI GCNGC 2 cut(s) 346, 624
Sau3AI GATC 5 cut(s) 72, 184, 304, 577, 635
SchI GAGTC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 467
SfaNI GCATC 2 cut(s) 18, 705
SfoI GGCGCC 1 cut(s) 450
SmiMI CAYNNNNRTG 2 cut(s) 432, 591
Sse9I AATT 5 cut(s) 45, 53, 190, 248, 535
SsiI CCGC 2 cut(s) 103, 390
SspDI GGCGCC 1 cut(s) 448
SspI AATATT 1 cut(s) 166
SspMI CTAG 3 cut(s) 77, 258, 479
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 341
TasI AATT 5 cut(s) 45, 53, 190, 248, 535
TfiI GAWTC 2 cut(s) 439, 541
Tru1I TTAA 2 cut(s) 33, 119
Tru9I TTAA 2 cut(s) 33, 119
TscAI CASTG 3 cut(s) 29, 338, 344
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 345, 623
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 575
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 3 cut(s) 29, 338, 344
XapI RAATTY 2 cut(s) 190, 535
XbaI TCTAGA 1 cut(s) 257
XspI CTAG 3 cut(s) 77, 258, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.