Rh7DG340100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014606
Physical Location & Seq
Forward (+)
44786244 .. 44786824
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG340100.1

Sequence Viewer

Length: 300 bp
ATGGATTATATTGAGCATACCCATGAGATTGACAATCTTCTGGCGCCGGAACTTCAGCGTCCTGCTCCAGAGCTAGCCTATCATCCACTTCTAGTTCCAAGCAAACAAGAAAGTTCTGCTCCTGCTACTTATCAGCAATATACGGTTCCGGTTCCGGTTCCAGATCCTGTGTATGGCGTACCAGTTGCACAAGCCCCCACAGCAGCAAGGCCGAGATCGGCTGGCTTCTTTGGATCTGTTGTTGACCATTTGTTTTGCTGCTTTTTTCCATGTTTTCGCATTCGTGAGGTTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.05

Weight (kDa)

5.7

Isoelectric Point (pI)

66.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014606)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24265 AT4G24265 AT4G24265
fragaria_vesca FvH4_5g28060
prunus_persica Prupe.1G585100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220231
rosa_laevigata RLG00000002248
rosa_multiflora Rmu_sc0001136.1_g000020
rosa_roxburghii Rroxscaffold_3G00238380 Rroxscaffold_3G00239710
rosa_rugosa Rorug07G0191300
rosa_samantha Rh7AG333400 Rh7BG323900 Rh7CG351000 Rh7DG329700 Rh7DG340100
rosa_wichuraiana Rw7G028120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AclWI GGATC 2 cut(s) 158, 241
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 2 cut(s) 158, 241
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 203, 258
AspLEI GCGC 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 215, 245
BfaI CTAG 2 cut(s) 74, 92
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 2 cut(s) 204, 259
BlsI GCNGC 2 cut(s) 205, 260
BmiI GGNNCC 4 cut(s) 45, 147, 153, 159
BmtI GCTAGC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 44
BsaWI WCCGGW 2 cut(s) 148, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 215, 245
BshFI GGCC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 3 cut(s) 47, 149, 155
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 163, 215, 233
BspANI GGCC 1 cut(s) 211
BspLI GGNNCC 4 cut(s) 45, 147, 153, 159
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 158, 241
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 182
BssMI GATC 3 cut(s) 163, 215, 233
BssNI GRCGYC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 75, 223
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 166, 218, 236
BstMBI GATC 3 cut(s) 163, 215, 233
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 215, 245
BstX2I RGATCY 2 cut(s) 163, 233
BstYI RGATCY 2 cut(s) 163, 233
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 75, 223
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 1 cut(s) 46
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 179
CviAII CATG 2 cut(s) 23, 270
CviJI RGCY 6 cut(s) 73, 77, 194, 211, 221, 225
CviKI_1 RGCY 6 cut(s) 73, 77, 194, 211, 221, 225
CviQI GTAC 1 cut(s) 179
DinI GGCGCC 1 cut(s) 45
DpnI GATC 3 cut(s) 165, 217, 235
DpnII GATC 3 cut(s) 163, 215, 233
Eco57I CTGAAG 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
FaeI CATG 2 cut(s) 26, 273
FaiI YATR 6 cut(s) 9, 18, 24, 141, 174, 271
FatI CATG 2 cut(s) 22, 269
Fnu4HI GCNGC 2 cut(s) 204, 259
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 204, 259
FspBI CTAG 2 cut(s) 74, 92
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 204, 259
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 211
HapII CCGG 3 cut(s) 47, 149, 155
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 26, 273
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HpaII CCGG 3 cut(s) 47, 149, 155
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 68, 161, 284
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 26, 273
HspAI GCGC 1 cut(s) 44
KasI GGCGCC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 163, 215, 233
LmnI GCTCC 2 cut(s) 70, 124
Lsp1109I GCAGC 2 cut(s) 215, 245
MaeI CTAG 2 cut(s) 74, 92
MalI GATC 3 cut(s) 165, 217, 235
MboI GATC 3 cut(s) 163, 215, 233
MboII GAAGA 1 cut(s) 29
MflI RGATCY 2 cut(s) 163, 233
Mly113I GGCGCC 1 cut(s) 44
MnlI CCTC 1 cut(s) 280
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 3 cut(s) 47, 149, 155
Mva1269I GAATGC 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 200
NarI GGCGCC 1 cut(s) 44
NdeII GATC 3 cut(s) 163, 215, 233
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 26, 273
NlaIV GGNNCC 4 cut(s) 45, 147, 153, 159
NmeAIII GCCGAG 1 cut(s) 237
PctI GAATGC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 205, 260
PluTI GGCGCC 1 cut(s) 47
PspN4I GGNNCC 4 cut(s) 45, 147, 153, 159
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 2 cut(s) 163, 233
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 2 cut(s) 204, 259
Sau3AI GATC 3 cut(s) 163, 215, 233
SetI ASST 2 cut(s) 75, 291
SfoI GGCGCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 21
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 2 cut(s) 74, 92
TaaI ACNGT 1 cut(s) 145
TseI GCWGC 2 cut(s) 203, 258
XspI CTAG 2 cut(s) 74, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.