Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005334

Physical Location & Seq

Genomic Coordinates Reverse (-)

12938956 .. 12941207

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTGGAGACGCGTGGCTTTACTTTCTCCGATGATTTCATCATCATCGCGATCCCTTAAGCTCAGCCAGGCAGCTTCTGGGCTCAAAGTTGGGGAATCTTTTGCAACAGACATAATTAGTCAGGAAGAACGAGTTTCACCGCCGAAAGAGAAAGCTCCATTTATTACATTTGTACTAGGGGGACCTGGAAGTGGAAAAGGTACACAATGCGAAAAGATTGTTGAGACTTTTGGATTACAACATCTAAGTGCTGGAGATTTGCTCAGGAGAGAGATCGCAATGCACACGGAAAATGGGGCTATGATTCTGAACTTGATTAAAGATGGGAAGATTGTTCCTTCAGAAGTTACAGTAAAATTAATACAGAAAGAGCTGGAATCGAGTGACAATCGCAAGTTTCTCATTGATGGTTTTCCACGAACTGAGGAGAACCGTGTTGCATTTGAGCGCATAATAAGAGCAGACCCTGATGTAGTACTGTTCTTCGATTGCCCTGAAGAAGAGATGGTGAAACGCGTCTTGAATCGTAATCAGGGCCGAATTGATGATAATATAACTACAATGAAAAAGCGTCTGAAAATCTTCAATGCCTTAAATCGTCCTGTTATTGACTACTACAAAAATAAAGGAAAACTCTACACCATTAATGCAGTAGGAACAGTAGACGACATATTCCAACATGTCCTACCTATTTTCAATTCATTTGAGCAATTGAAGGAGAGTAGTCATGTAAATCCACAGTCCCATCTCGGTTCGAGTTTGGTAGAAAATTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00240 ko00983 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00240 map00983 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ADK

Protein Analysis

259

Amino Acids

29.04

Weight (kDa)

8.45

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	58 - 210	9.7e-48	Adenylate kinase
AAA_17	PF13207	59 - 189	9e-33	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25280 AT4G25280
fragaria_vesca	FvH4_7g27880 FvH4_7g27880 FvH4_7g27880
malus_domestica	MD00G1104800.v1.1 MD07G1256100.v1.1
prunus_persica	Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1
pyrus_communis	pycom01g19570 pycom07g22900
rosa_chinensis	RchiOBHm_Chr1g0374821
rosa_laevigata	RLG00000026712
rosa_multiflora	Rmu_co8168376.1_g000001 Rmu_sc0002063.1_g000006 Rmu_sc0004947.1_g000024
rosa_roxburghii	Rroxscaffold_4G00283260
rosa_rugosa	Rorug01G0385100
rosa_samantha	Rh1AG396600 Rh1BG360700 Rh1CG374100 Rh1DG391500
rosa_wichuraiana	Rw1G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	3 cut(s)	12, 49, 516
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	769
AcuI	CTGAAG	2 cut(s)	324, 516
AfaI	GTAC	3 cut(s)	174, 202, 477
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflII	CTTAAG	1 cut(s)	56
AflIII	ACRYGT	3 cut(s)	10, 514, 679
AgsI	TTSAA	4 cut(s)	523, 586, 697, 715
AjnI	CCWGG	2 cut(s)	66, 184
AluBI	AGCT	4 cut(s)	61, 74, 155, 373
AluI	AGCT	4 cut(s)	61, 74, 155, 373
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	45
AlwNI	CAGNNNCTG	2 cut(s)	77, 467
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	769
AseI	ATTAAT	2 cut(s)	359, 645
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	182, 535
AsuHPI	GGTGA	2 cut(s)	129, 520
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	4 cut(s)	317, 401, 499, 753
BciT130I	CCWGG	2 cut(s)	68, 186
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	72
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	73
BmcAI	AGTACT	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	68, 186
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	182, 535
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	68, 186
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	68, 186
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	76, 277, 414
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	3 cut(s)	12, 49, 516
BshFI	GGCC	1 cut(s)	537
BslFI	GGGAC	2 cut(s)	195, 727
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	195, 727
BsnI	GGCC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	50, 273
Bsp1720I	GCTNAGC	1 cut(s)	62
Bsp68I	TCGCGA	1 cut(s)	49
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	3 cut(s)	75, 276, 415
BspFNI	CGCG	3 cut(s)	12, 49, 516
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	285
BssMI	GATC	2 cut(s)	50, 273
Bst2UI	CCWGG	2 cut(s)	68, 186
Bst4CI	ACNGT	5 cut(s)	352, 434, 480, 661, 741
Bst6I	CTCTTC	1 cut(s)	495
BstAFI	CTTAAG	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	62, 245, 263, 423
BstFNI	CGCG	3 cut(s)	12, 49, 516
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	53, 276
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	50, 273
BstNI	CCWGG	2 cut(s)	68, 186
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	66, 184
BstUI	CGCG	3 cut(s)	12, 49, 516
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	537
BtgZI	GCGATG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	49
CaiI	CAGNNNCTG	2 cut(s)	77, 467
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	2 cut(s)	182, 535
CseI	GACGC	3 cut(s)	18, 505, 560
Csp6I	GTAC	3 cut(s)	173, 201, 476
CviAII	CATG	2 cut(s)	680, 728
CviJI	RGCY	9 cut(s)	17, 61, 66, 74, 82, 155, 299, 373, 537
CviKI_1	RGCY	9 cut(s)	17, 61, 66, 74, 82, 155, 299, 373, 537
CviQI	GTAC	3 cut(s)	173, 201, 476
DdeI	CTNAG	4 cut(s)	62, 245, 263, 423
DpnI	GATC	2 cut(s)	52, 275
DpnII	GATC	2 cut(s)	50, 273
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	324, 516
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	66, 184
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	2 cut(s)	683, 731
FaiI	YATR	7 cut(s)	113, 302, 452, 554, 671, 681, 729
FaqI	GGGAC	2 cut(s)	195, 727
FatI	CATG	2 cut(s)	679, 727
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	537
HgaI	GACGC	3 cut(s)	18, 505, 560
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	683, 731
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	4 cut(s)	95, 304, 377, 523
HphI	GGTGA	2 cut(s)	129, 520
Hpy166II	GTNNAC	2 cut(s)	203, 664
Hpy188I	TCNGA	4 cut(s)	30, 309, 343, 576
Hpy188III	TCNNGA	5 cut(s)	48, 122, 265, 520, 777
Hpy8I	GTNNAC	2 cut(s)	203, 664
HpyAV	CCTTC	2 cut(s)	348, 709
HpyCH4III	ACNGT	5 cut(s)	352, 434, 480, 661, 741
HpyCH4V	TGCA	4 cut(s)	104, 283, 440, 650
HpyF3I	CTNAG	4 cut(s)	62, 245, 263, 423
Hsp92II	CATG	2 cut(s)	683, 731
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	50, 273
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	346, 383
MalI	GATC	2 cut(s)	52, 275
MboI	GATC	2 cut(s)	50, 273
MboII	GAAGA	6 cut(s)	137, 340, 475, 509, 512, 574
MfeI	CAATTG	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	114, 356, 540, 697, 710, 769
MluI	ACGCGT	2 cut(s)	10, 514
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	5 cut(s)	57, 318, 359, 593, 645
MslI	CAYNNNNRTG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	68, 186
MunI	CAATTG	1 cut(s)	710
MvaI	CCWGG	2 cut(s)	68, 186
MvnI	CGCG	3 cut(s)	12, 49, 516
NdeII	GATC	2 cut(s)	50, 273
NlaIII	CATG	2 cut(s)	683, 731
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	383
NruI	TCGCGA	1 cut(s)	49
NspI	RCATGY	1 cut(s)	683
PciI	ACATGT	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	95, 304, 377, 523
PkrI	GCNGC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	182
PscI	ACATGT	1 cut(s)	679
PshBI	ATTAAT	2 cut(s)	359, 645
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	66, 184
PspGI	CCWGG	2 cut(s)	66, 184
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	182, 535
PspPPI	RGGWCCY	1 cut(s)	182
PstNI	CAGNNNCTG	2 cut(s)	77, 467
RruI	TCGCGA	1 cut(s)	49
RsaI	GTAC	3 cut(s)	174, 202, 477
RsaNI	GTAC	3 cut(s)	173, 201, 476
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	57, 318, 359, 593, 645
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	50, 273
Sau96I	GGNCC	2 cut(s)	182, 535
ScaI	AGTACT	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	68, 186
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	7 cut(s)	63, 76, 157, 187, 202, 375, 691
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	114, 356, 540, 697, 710, 769
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	66, 184
TaaI	ACNGT	5 cut(s)	352, 434, 480, 661, 741
TaqI	TCGA	3 cut(s)	380, 486, 755
TasI	AATT	6 cut(s)	114, 356, 540, 697, 710, 769
TatI	WGTACW	2 cut(s)	172, 475
TfiI	GAWTC	4 cut(s)	95, 304, 377, 523
Tru1I	TTAA	5 cut(s)	57, 318, 359, 593, 645
Tru9I	TTAA	5 cut(s)	57, 318, 359, 593, 645
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	4 cut(s)	27, 578, 690, 762
TspGWI	ACGGA	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	2 cut(s)	359, 645
XapI	RAATTY	1 cut(s)	769
XceI	RCATGY	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.