pycom07g22900

cytidylate kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0005334
Physical Location & Seq
Reverse (-)
24044827 .. 24046767
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g22900.1

Sequence Viewer

Length: 636 bp
ATGTGGAGGCGCGCGGCTTCTCTTTCTCCTCTGGTTTCTCGCTCGAAACCCTCAAAACTTTGCCAGTCAAAAGTTGCTCCGTATATAACTTTTGTGCTAGGTGGTCCTGGTAGTGGAAAAGGTACTCAGTGTGCGAAGATAGTCGAGGCATTTGGGTTCACTCATGTCAGTGCAGGGGATCTGTTGAGGAGGGAGATAGCTTCCAATAGCGCATACGGCTCGGTGATTCTTGGTACAATTAGAGAAGGAAAAATTGTTCCTTCTCAGGTGACGGTCCAGCTCATTCAAAAGGAGATGGAATCAAGTGACAATGATAAGTTTCTCATTGATGGCTTCCCTCGAAGTGAGCAGAACCGCAAGGCATTTGAACGAATTATTGGCACAGAACCAAATGTTGTGCTTTTCTTTGACTGTCCTGAACAGGAGATGGTGAAGCGAGTGCTAAATCGTAATCAGGGCCGAGTTGATGATAATATTGAAACAATAAAAAAACGTCTAGAAATATTTGACGAATTAAATTGGCCCGTTATCAATCACTATTCAAAGACGGGAAAACTTCACAAGATCAATGCAGTGGGAACGGTGGATGACATATTTGAAAAAGTTCGGCCAATTTTTGCTGCGCTGAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00230 ko00240 ko00730 ko00983 ko01100 ko01110 ko01130 ko04714 ko05010 ko05012 ko05016 map00190 map00230 map00240 map00730 map00983 map01100 map01110 map01130 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ADK

Protein Analysis

212

Amino Acids

23.58

Weight (kDa)

9.38

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_18 PF13238 31 - 157 4e-06 AAA domain
ADK PF00406 32 - 184 1.9e-45 Adenylate kinase
AAA_17 PF13207 33 - 163 1.1e-33 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 12, 14
AciI CCGC 2 cut(s) 14, 355
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 608
AfaI GTAC 2 cut(s) 124, 235
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 5 cut(s) 287, 368, 479, 543, 599
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 2 cut(s) 200, 280
AluI AGCT 2 cut(s) 200, 280
AlwI GGATC 1 cut(s) 186
AoxI GGCC 3 cut(s) 457, 521, 608
ApeKI GCWGC 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 4 cut(s) 12, 14, 212, 625
AspS9I GGNCC 4 cut(s) 104, 274, 457, 522
AsuHPI GGTGA 3 cut(s) 235, 280, 442
AvaII GGWCC 2 cut(s) 104, 274
BbvI GCAGC 1 cut(s) 607
BccI CCATC 3 cut(s) 289, 323, 421
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 1 cut(s) 108
BfaI CTAG 2 cut(s) 98, 497
BisI GCNGC 2 cut(s) 15, 621
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 2 cut(s) 16, 622
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 2 cut(s) 104, 274
BmgT120I GGNCC 4 cut(s) 104, 274, 457, 522
BmrFI CCNGG 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 626
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 3 cut(s) 140, 278, 617
BseNI ACTGG 1 cut(s) 64
BsePI GCGCGC 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 18, 202
BseXI GCAGC 1 cut(s) 607
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 12, 14
BshFI GGCC 3 cut(s) 459, 523, 610
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 3 cut(s) 459, 523, 610
Bsp143I GATC 2 cut(s) 178, 564
Bsp1720I GCTNAGC 1 cut(s) 626
BspACI CCGC 2 cut(s) 14, 355
BspANI GGCC 3 cut(s) 459, 523, 610
BspCNI CTCAG 3 cut(s) 139, 277, 618
BspFNI CGCG 2 cut(s) 12, 14
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 64
BssHII GCGCGC 1 cut(s) 10
BssMI GATC 2 cut(s) 178, 564
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 274, 413, 583
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 3 cut(s) 126, 264, 626
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 2 cut(s) 12, 14
BstHHI GCGC 4 cut(s) 12, 14, 212, 625
BstKTI GATC 2 cut(s) 181, 567
BstMBI GATC 2 cut(s) 178, 564
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 2 cut(s) 12, 14
BstV1I GCAGC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 3 cut(s) 459, 523, 610
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 134, 175, 579
Cac8I GCNNGC 1 cut(s) 12
CfoI GCGC 4 cut(s) 12, 14, 212, 625
Cfr13I GGNCC 4 cut(s) 104, 274, 457, 522
Csp6I GTAC 2 cut(s) 123, 234
CviAII CATG 1 cut(s) 164
CviJI RGCY 8 cut(s) 17, 200, 219, 280, 333, 459, 523, 610
CviKI_1 RGCY 8 cut(s) 17, 200, 219, 280, 333, 459, 523, 610
CviQI GTAC 2 cut(s) 123, 234
DdeI CTNAG 3 cut(s) 126, 264, 626
DpnI GATC 2 cut(s) 180, 566
DpnII GATC 2 cut(s) 178, 564
EaeI YGGCCR 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 104, 274
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 84, 86, 165, 214, 593
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 15, 621
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 2 cut(s) 15, 621
FspBI CTAG 2 cut(s) 98, 497
GlaI GCGC 4 cut(s) 11, 13, 211, 624
GluI GCNGC 2 cut(s) 15, 621
HaeIII GGCC 3 cut(s) 459, 523, 610
HhaI GCGC 4 cut(s) 12, 14, 212, 625
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 4 cut(s) 10, 12, 210, 623
HinP1I GCGC 4 cut(s) 10, 12, 210, 623
HinfI GANTC 2 cut(s) 226, 299
HphI GGTGA 3 cut(s) 235, 280, 442
Hpy166II GTNNAC 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 416, 497
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 239, 270
HpyCH4III ACNGT 3 cut(s) 274, 413, 583
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 2 cut(s) 173, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 3 cut(s) 126, 264, 626
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 4 cut(s) 10, 12, 210, 623
Kzo9I GATC 2 cut(s) 178, 564
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 607
MaeI CTAG 2 cut(s) 98, 497
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 2 cut(s) 268, 305
MalI GATC 2 cut(s) 180, 566
MboI GATC 2 cut(s) 178, 564
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 178
MluCI AATT 6 cut(s) 237, 252, 372, 512, 517, 612
MnlI CCTC 6 cut(s) 39, 61, 139, 180, 183, 348
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 12, 14
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 2 cut(s) 178, 564
NlaIII CATG 1 cut(s) 167
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 268, 305
PauI GCGCGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 2 cut(s) 226, 299
PkrI GCNGC 2 cut(s) 16, 622
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 4 cut(s) 104, 274, 457, 522
PsuI RGATCY 1 cut(s) 178
PteI GCGCGC 1 cut(s) 10
RsaI GTAC 2 cut(s) 124, 235
RsaNI GTAC 2 cut(s) 123, 234
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 2 cut(s) 15, 621
Sau3AI GATC 2 cut(s) 178, 564
Sau96I GGNCC 4 cut(s) 104, 274, 457, 522
ScrFI CCNGG 1 cut(s) 108
SetI ASST 6 cut(s) 103, 124, 202, 270, 282, 496
SinI GGWCC 2 cut(s) 104, 274
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 6 cut(s) 237, 252, 372, 512, 517, 612
SsiI CCGC 2 cut(s) 14, 355
SspI AATATT 2 cut(s) 475, 504
SspMI CTAG 2 cut(s) 98, 497
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 3 cut(s) 274, 413, 583
TaiI ACGT 1 cut(s) 496
TaqI TCGA 3 cut(s) 44, 144, 340
TasI AATT 6 cut(s) 237, 252, 372, 512, 517, 612
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 226, 299
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 3 cut(s) 134, 175, 579
TseFI GTSAC 2 cut(s) 268, 305
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 2 cut(s) 268, 305
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 3 cut(s) 134, 175, 579
VpaK11BI GGWCC 2 cut(s) 104, 274
XbaI TCTAGA 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 2 cut(s) 98, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.