Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005334

Physical Location & Seq

Genomic Coordinates Reverse (-)

32290839 .. 32293296

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1256100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGAGGCGCGCGGCTTCTCTTTCTCCTCTGGCTTCTCGCTCGAAACCCTCAAAACTTTGCCAGGAAGCATGCACATTCAAGGTTTGGGAATCGTTTTCCTCGGAATCCGAGATTCCAACGCCGTCAAGGGTTGCTCCGTATATAACTTTTGTGCTAGGTGGTCCTGGTAGTGGAAAAGGTACTCAGTGTGCGAAGATGGTCGAGGCATTTGGGTTCACTCATGTCAGTGCAGGGGATCTGTTGAGGAGGGAGATAGCTTCCAATAGCGCATATGGCTCGGTGATTCTTGGTACAATTAGAGAAGGAAGAATTGTTCCTTCTCAAGTGACGGTCCAGCTCATTCAAAAGGAGATGGAATCAAGTGACAATGATAAGTTTCTCATTGATGGCTTCCCTCGAAGCGAGCAGAACCGCGAGGCATTTGAACGAATTATTGGCACAGAACCAAGTGTTGTGCTTTTCTTTGACTGTCCTGAACAGGAGATGGTGAAGCGAGTGCTAAATCGTAATCAGGGCCGAGTTGATGATAATATTGAAACAATAAAAAAACGTCTTGAAATATTTGACGAATTAAATTGGCCCGTTATCAATCACTATTCAAAAACGGGAAAACTTCACAAGATCAATGCAGTGGGAACGGTGGATGACATATTTGAAAAAGTTCGGCCAATTTTTGCTGCGCTGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00230 ko00240 ko00730 ko00983 ko01100 ko01110 ko01130 ko04714 ko05010 ko05012 ko05016 map00190 map00230 map00240 map00730 map00983 map01100 map01110 map01130 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ADK PPR

Protein Analysis

232

Amino Acids

25.86

Weight (kDa)

8.32

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	51 - 177	7.2e-06	AAA domain
ADK	PF00406	52 - 204	1.6e-44	Adenylate kinase
AAA_17	PF13207	53 - 183	2.4e-33	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25280 AT4G25280
fragaria_vesca	FvH4_7g27880 FvH4_7g27880 FvH4_7g27880
malus_domestica	MD00G1104800.v1.1 MD07G1256100.v1.1
prunus_persica	Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1
pyrus_communis	pycom01g19570 pycom07g22900
rosa_chinensis	RchiOBHm_Chr1g0374821
rosa_laevigata	RLG00000026712
rosa_multiflora	Rmu_co8168376.1_g000001 Rmu_sc0002063.1_g000006 Rmu_sc0004947.1_g000024
rosa_roxburghii	Rroxscaffold_4G00283260
rosa_rugosa	Rorug01G0385100
rosa_samantha	Rh1AG396600 Rh1BG360700 Rh1CG374100 Rh1DG391500
rosa_wichuraiana	Rw1G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	12, 14, 417
AciI	CCGC	2 cut(s)	14, 415
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	668
AfaI	GTAC	2 cut(s)	184, 295
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	7 cut(s)	82, 347, 428, 539, 560, 603, 659
AjnI	CCWGG	2 cut(s)	63, 166
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	2 cut(s)	260, 340
AluI	AGCT	2 cut(s)	260, 340
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	3 cut(s)	517, 581, 668
ApeKI	GCWGC	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	4 cut(s)	12, 14, 272, 685
AspS9I	GGNCC	4 cut(s)	164, 334, 517, 582
AsuHPI	GGTGA	2 cut(s)	295, 502
AvaII	GGWCC	2 cut(s)	164, 334
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	4 cut(s)	193, 349, 383, 481
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	2 cut(s)	65, 168
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	2 cut(s)	15, 681
BlpI	GCTNAGC	1 cut(s)	686
BlsI	GCNGC	2 cut(s)	16, 682
Bme1390I	CCNGG	2 cut(s)	65, 168
Bme18I	GGWCC	2 cut(s)	164, 334
BmgT120I	GGNCC	4 cut(s)	164, 334, 517, 582
BmrFI	CCNGG	2 cut(s)	65, 168
Bpu1102I	GCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	65, 168
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	200, 677
BsePI	GCGCGC	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	18, 262
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	3 cut(s)	12, 14, 417
BshFI	GGCC	3 cut(s)	519, 583, 670
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	3 cut(s)	519, 583, 670
Bsp143I	GATC	2 cut(s)	238, 624
Bsp1720I	GCTNAGC	1 cut(s)	686
BspACI	CCGC	2 cut(s)	14, 415
BspANI	GGCC	3 cut(s)	519, 583, 670
BspCNI	CTCAG	2 cut(s)	199, 678
BspFNI	CGCG	3 cut(s)	12, 14, 417
BspPI	GGATC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	102
BssHII	GCGCGC	1 cut(s)	10
BssMI	GATC	2 cut(s)	238, 624
Bst2UI	CCWGG	2 cut(s)	65, 168
Bst4CI	ACNGT	3 cut(s)	334, 473, 643
BstC8I	GCNNGC	3 cut(s)	12, 73, 407
BstDEI	CTNAG	2 cut(s)	186, 686
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	3 cut(s)	12, 14, 417
BstHHI	GCGC	4 cut(s)	12, 14, 272, 685
BstKTI	GATC	2 cut(s)	241, 627
BstMBI	GATC	2 cut(s)	238, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	2 cut(s)	65, 168
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	63, 166
BstUI	CGCG	3 cut(s)	12, 14, 417
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	519, 583, 670
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	3 cut(s)	194, 235, 639
Cac8I	GCNNGC	3 cut(s)	12, 73, 407
CfoI	GCGC	4 cut(s)	12, 14, 272, 685
Cfr13I	GGNCC	4 cut(s)	164, 334, 517, 582
Csp6I	GTAC	2 cut(s)	183, 294
CviAII	CATG	2 cut(s)	72, 224
CviJI	RGCY	9 cut(s)	17, 35, 260, 279, 340, 393, 519, 583, 670
CviKI_1	RGCY	9 cut(s)	17, 35, 260, 279, 340, 393, 519, 583, 670
CviQI	GTAC	2 cut(s)	183, 294
DdeI	CTNAG	2 cut(s)	186, 686
DpnI	GATC	2 cut(s)	240, 626
DpnII	GATC	2 cut(s)	238, 624
EaeI	YGGCCR	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	164, 334
EcoRII	CCWGG	2 cut(s)	63, 166
FaeI	CATG	2 cut(s)	75, 227
FaiI	YATR	7 cut(s)	73, 144, 146, 225, 274, 276, 653
FatI	CATG	2 cut(s)	71, 223
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	15, 681
FokI	GGATG	1 cut(s)	659
Fsp4HI	GCNGC	2 cut(s)	15, 681
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	4 cut(s)	11, 13, 271, 684
GluI	GCNGC	2 cut(s)	15, 681
HaeIII	GGCC	3 cut(s)	519, 583, 670
HhaI	GCGC	4 cut(s)	12, 14, 272, 685
Hin1II	CATG	2 cut(s)	75, 227
Hin6I	GCGC	4 cut(s)	10, 12, 270, 683
HinP1I	GCGC	4 cut(s)	10, 12, 270, 683
HinfI	GANTC	5 cut(s)	92, 107, 115, 286, 359
HphI	GGTGA	2 cut(s)	295, 502
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	106, 112
Hpy188III	TCNNGA	2 cut(s)	476, 557
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	299, 330
HpyCH4III	ACNGT	3 cut(s)	334, 473, 643
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	3 cut(s)	75, 233, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	186, 686
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	75, 227
HspAI	GCGC	4 cut(s)	10, 12, 270, 683
Kzo9I	GATC	2 cut(s)	238, 624
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	2 cut(s)	328, 365
MalI	GATC	2 cut(s)	240, 626
MboI	GATC	2 cut(s)	238, 624
MboII	GAAGA	2 cut(s)	208, 321
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	6 cut(s)	297, 312, 432, 572, 577, 672
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	8 cut(s)	39, 61, 112, 199, 240, 243, 408, 412
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	65, 168
MvaI	CCWGG	2 cut(s)	65, 168
MvnI	CGCG	3 cut(s)	12, 14, 417
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	238, 624
NlaIII	CATG	2 cut(s)	75, 227
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	328, 365
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PauI	GCGCGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	5 cut(s)	92, 107, 115, 286, 359
PkrI	GCNGC	2 cut(s)	16, 682
Psp6I	CCWGG	2 cut(s)	63, 166
PspGI	CCWGG	2 cut(s)	63, 166
PspPI	GGNCC	4 cut(s)	164, 334, 517, 582
PsuI	RGATCY	1 cut(s)	238
PteI	GCGCGC	1 cut(s)	10
RsaI	GTAC	2 cut(s)	184, 295
RsaNI	GTAC	2 cut(s)	183, 294
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	2 cut(s)	15, 681
Sau3AI	GATC	2 cut(s)	238, 624
Sau96I	GGNCC	4 cut(s)	164, 334, 517, 582
ScrFI	CCNGG	2 cut(s)	65, 168
SetI	ASST	6 cut(s)	87, 163, 184, 262, 342, 556
SinI	GGWCC	2 cut(s)	164, 334
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	6 cut(s)	297, 312, 432, 572, 577, 672
SsiI	CCGC	2 cut(s)	14, 415
SspI	AATATT	2 cut(s)	535, 564
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	63, 166
TaaI	ACNGT	3 cut(s)	334, 473, 643
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	44, 204, 400
TasI	AATT	6 cut(s)	297, 312, 432, 572, 577, 672
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	5 cut(s)	92, 107, 115, 286, 359
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	3 cut(s)	194, 235, 639
TseFI	GTSAC	2 cut(s)	328, 365
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	328, 365
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	3 cut(s)	194, 235, 639
VpaK11BI	GGWCC	2 cut(s)	164, 334
XceI	RCATGY	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.