Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005334

Physical Location & Seq

Genomic Coordinates Forward (+)

21978307 .. 21981269

Gene Structure 2963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1104800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGAGGCGCGTGGCTTCACTTTCTCCTCTGGTTTCTCGCTCGAAACCCTCAAAACTTAGCCAGGAAGCATGTACGTTCAAGATTTGGGAATCGTTTTCCTCGGAATCCCAGGTTCCAACGCCGTCAAAGGTTGCACCGTTTATAACCTTTGTGCTAGGTGGTCCTGGTAGTGGAAAAGGTACTCAGTGTGCGAAGATAGTCGAGGAATTTGGGTTCACTCATATCAGCGCAGGGGATCTGTTGAGGAGGGAAATAGCTTCCAATAGCGCATACGGCTCGGTGATTCTTAGCACAATTAGGGAAGGAAAAATTGTTCCCTCTCAAGTGACAGTCCAACTCATTCGAAAGGAGATGGAATCAAGTGACAATGATAAGTTTCTCATTGATGGCTTCCCTCGAAGTGAGGAGAACCGCGAGGCATTTGAACAAATTATTGGCAGAGAACCAAATGTTGTGCTTTTCTTTGACTGCCCTGAACGGGAGATGGTGAAGCGAGTGCTAAATCGTAATCAGGGCCGAGTTGATGATAACATTGACACAATAAAAAAACGTCTTGAAATATTTGATGAATTAAATTGGCCCGTTATCAATCACTATTCAATGACAGGAAAACTTCACAAGATCAATGCTGTGGGAACGGTGGATGACATATTTGAAAAAGTTCGGCCAATTTTTGCTGCACTGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00240 ko00983 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00240 map00983 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ADK

Protein Analysis

232

Amino Acids

26.01

Weight (kDa)

8.4

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	51 - 177	1.3e-06	AAA domain
ADK	PF00406	52 - 204	3.3e-45	Adenylate kinase
AAA_17	PF13207	53 - 183	7e-34	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25280 AT4G25280
fragaria_vesca	FvH4_7g27880 FvH4_7g27880 FvH4_7g27880
malus_domestica	MD00G1104800.v1.1 MD07G1256100.v1.1
prunus_persica	Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1
pyrus_communis	pycom01g19570 pycom07g22900
rosa_chinensis	RchiOBHm_Chr1g0374821
rosa_laevigata	RLG00000026712
rosa_multiflora	Rmu_co8168376.1_g000001 Rmu_sc0002063.1_g000006 Rmu_sc0004947.1_g000024
rosa_roxburghii	Rroxscaffold_4G00283260
rosa_rugosa	Rorug01G0385100
rosa_samantha	Rh1AG396600 Rh1BG360700 Rh1CG374100 Rh1DG391500
rosa_wichuraiana	Rw1G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccII	CGCG	2 cut(s)	12, 417
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	2 cut(s)	76, 184
AfiI	CCNNNNNNNGG	2 cut(s)	173, 481
AgsI	TTSAA	5 cut(s)	82, 428, 560, 603, 659
AjnI	CCWGG	3 cut(s)	63, 111, 166
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AloI	GAACNNNNNNTCC	4 cut(s)	200, 232, 300, 332
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	3 cut(s)	517, 581, 668
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	3 cut(s)	12, 233, 272
AspS9I	GGNCC	3 cut(s)	164, 517, 582
AsuHPI	GGTGA	2 cut(s)	295, 502
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	3 cut(s)	349, 383, 481
BceAI	ACGGC	2 cut(s)	109, 292
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	3 cut(s)	65, 113, 168
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	3 cut(s)	65, 113, 168
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	3 cut(s)	164, 517, 582
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	3 cut(s)	65, 113, 168
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	102, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 481
BseBI	CCWGG	3 cut(s)	65, 113, 168
BseDI	CCNNGG	2 cut(s)	102, 111
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	173, 481
BseMII	CTCAG	2 cut(s)	200, 677
BseRI	GAGGAG	3 cut(s)	18, 262, 422
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	2 cut(s)	12, 417
BshFI	GGCC	3 cut(s)	519, 583, 670
BslI	CCNNNNNNNGG	2 cut(s)	173, 481
BsnI	GGCC	3 cut(s)	519, 583, 670
Bsp119I	TTCGAA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	238, 624
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	3 cut(s)	519, 583, 670
BspCNI	CTCAG	2 cut(s)	199, 678
BspFNI	CGCG	2 cut(s)	12, 417
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	102, 111
BssMI	GATC	2 cut(s)	238, 624
Bst2UI	CCWGG	3 cut(s)	65, 113, 168
Bst4CI	ACNGT	3 cut(s)	141, 334, 643
BstBI	TTCGAA	1 cut(s)	346
BstDEI	CTNAG	4 cut(s)	59, 186, 290, 686
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	2 cut(s)	12, 417
BstHHI	GCGC	3 cut(s)	12, 233, 272
BstKTI	GATC	2 cut(s)	241, 627
BstMBI	GATC	2 cut(s)	238, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	3 cut(s)	65, 113, 168
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	3 cut(s)	63, 111, 166
BstUI	CGCG	2 cut(s)	12, 417
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	519, 583, 670
BtsCI	GGATG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	194, 683
CfoI	GCGC	3 cut(s)	12, 233, 272
Cfr13I	GGNCC	3 cut(s)	164, 517, 582
Csp6I	GTAC	2 cut(s)	75, 183
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	8 cut(s)	17, 63, 260, 279, 393, 519, 583, 670
CviKI_1	RGCY	8 cut(s)	17, 63, 260, 279, 393, 519, 583, 670
CviQI	GTAC	2 cut(s)	75, 183
DdeI	CTNAG	4 cut(s)	59, 186, 290, 686
DpnI	GATC	2 cut(s)	240, 626
DpnII	GATC	2 cut(s)	238, 624
EaeI	YGGCCR	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	63, 111, 166
FaeI	CATG	1 cut(s)	75
FaiI	YATR	5 cut(s)	73, 146, 225, 274, 653
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	1 cut(s)	659
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	3 cut(s)	11, 232, 271
GluI	GCNGC	1 cut(s)	681
HaeIII	GGCC	3 cut(s)	519, 583, 670
HhaI	GCGC	3 cut(s)	12, 233, 272
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	3 cut(s)	10, 231, 270
HinP1I	GCGC	3 cut(s)	10, 231, 270
HinfI	GANTC	4 cut(s)	92, 107, 286, 359
HphI	GGTGA	2 cut(s)	295, 502
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	82, 557
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	3 cut(s)	141, 334, 643
HpyCH4IV	ACGT	2 cut(s)	77, 553
HpyCH4V	TGCA	2 cut(s)	137, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	4 cut(s)	59, 186, 290, 686
HpySE526I	ACGT	2 cut(s)	77, 553
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	3 cut(s)	10, 231, 270
Kzo9I	GATC	2 cut(s)	238, 624
Lsp1109I	GCAGC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	77, 553
MaeIII	GTNAC	2 cut(s)	328, 365
MalI	GATC	2 cut(s)	240, 626
MboI	GATC	2 cut(s)	238, 624
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	7 cut(s)	209, 297, 312, 432, 572, 577, 672
MmeI	TCCRAC	2 cut(s)	143, 361
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	65, 113, 168
MvaI	CCWGG	3 cut(s)	65, 113, 168
MvnI	CGCG	2 cut(s)	12, 417
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	238, 624
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	328, 365
NspI	RCATGY	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	4 cut(s)	92, 107, 286, 359
PkrI	GCNGC	1 cut(s)	682
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	63, 111, 166
PspGI	CCWGG	3 cut(s)	63, 111, 166
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	164, 517, 582
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	76, 184
RsaNI	GTAC	2 cut(s)	75, 183
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	2 cut(s)	238, 624
Sau96I	GGNCC	3 cut(s)	164, 517, 582
ScrFI	CCNGG	3 cut(s)	65, 113, 168
SetI	ASST	8 cut(s)	80, 117, 135, 152, 163, 184, 262, 556
SfuI	TTCGAA	1 cut(s)	346
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	7 cut(s)	209, 297, 312, 432, 572, 577, 672
SsiI	CCGC	1 cut(s)	415
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	63, 111, 166
TaaI	ACNGT	3 cut(s)	141, 334, 643
TaiI	ACGT	2 cut(s)	80, 556
TaqI	TCGA	4 cut(s)	44, 204, 346, 400
TasI	AATT	7 cut(s)	209, 297, 312, 432, 572, 577, 672
TfiI	GAWTC	4 cut(s)	92, 107, 286, 359
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	194, 690
TseFI	GTSAC	2 cut(s)	328, 365
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	328, 365
TspDTI	ATGAA	1 cut(s)	585
TspRI	CASTG	2 cut(s)	194, 690
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.