Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8168376.1

Orthogroup ID

OG0005334

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 670

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8168376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

gtactcaatgtgctaagatagttgaggcatttgggttcactcatgtgagtgcaggggatctgttgaggagggaaattgcttctaatagcgcatatggcgctgtgattcttagtacgattagagaaggaaagattgttccctctcaagtgacggttcagctcattctaaaggagatggaagcgagtgataattgcaagtttctcattgatgggttccctcgaagcgaggagaaccgcaaggcatttgaagaagttattggagcagaaccggatgttgtacttttcttcgactgtcctgaacaagagatggtgaagcgagtgctaaatcgtaatcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00240 ko00983 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00240 map00983 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ADK

Protein Analysis

111

Amino Acids

12.4

Weight (kDa)

5.01

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25280 AT4G25280
fragaria_vesca	FvH4_7g27880 FvH4_7g27880 FvH4_7g27880
malus_domestica	MD00G1104800.v1.1 MD07G1256100.v1.1
prunus_persica	Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1
pyrus_communis	pycom01g19570 pycom07g22900
rosa_chinensis	RchiOBHm_Chr1g0374821
rosa_laevigata	RLG00000026712
rosa_multiflora	Rmu_co8168376.1_g000001 Rmu_sc0002063.1_g000006 Rmu_sc0004947.1_g000024
rosa_roxburghii	Rroxscaffold_4G00283260
rosa_rugosa	Rorug01G0385100
rosa_samantha	Rh1AG396600 Rh1BG360700 Rh1CG374100 Rh1DG391500
rosa_wichuraiana	Rw1G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	65
AfaI	GTAC	3 cut(s)	3, 114, 278
AgsI	TTSAA	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AleI	CACNNNNGTG	1 cut(s)	43
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AlwI	GGATC	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	91, 100
AsuHPI	GGTGA	1 cut(s)	321
BccI	CCATC	3 cut(s)	168, 202, 300
BfoI	RGCGCY	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	267
BseGI	GGATG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	81, 241
BsgI	GTGCAG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	65
BssMI	GATC	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	153, 292
BstDEI	CTNAG	2 cut(s)	14, 109
BstF5I	GGATG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	91, 100
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 97
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	276
CfoI	GCGC	2 cut(s)	91, 100
Csp6I	GTAC	3 cut(s)	2, 113, 277
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	1 cut(s)	159
CviKI_1	RGCY	1 cut(s)	159
CviQI	GTAC	3 cut(s)	2, 113, 277
DdeI	CTNAG	2 cut(s)	14, 109
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 93, 95
FatI	CATG	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	93
FokI	GGATG	1 cut(s)	283
GlaI	GCGC	2 cut(s)	90, 99
HaeII	RGCGCY	1 cut(s)	101
HapII	CCGG	1 cut(s)	268
HhaI	GCGC	2 cut(s)	91, 100
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	2 cut(s)	89, 98
HinP1I	GCGC	2 cut(s)	89, 98
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	153, 292
HpyCH4V	TGCA	2 cut(s)	52, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 97
HpyF3I	CTNAG	2 cut(s)	14, 109
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	2 cut(s)	89, 98
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	4 cut(s)	38, 281, 308, 319
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	2 cut(s)	259, 276
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	2 cut(s)	74, 189
MnlI	CCTC	6 cut(s)	18, 59, 62, 150, 219, 227
MslI	CAYNNNNRTG	2 cut(s)	43, 47
MspI	CCGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	95, 97
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	147
OliI	CACNNNNGTG	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	3 cut(s)	3, 114, 278
RsaNI	GTAC	3 cut(s)	2, 113, 277
RseI	CAYNNNNRTG	2 cut(s)	43, 47
Sau3AI	GATC	1 cut(s)	57
SetI	ASST	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	43, 47
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	74, 189
SsiI	CCGC	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	153, 292
TaqI	TCGA	2 cut(s)	219, 287
TasI	AATT	2 cut(s)	74, 189
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.