Rmu_sc0004947.1_g000024

Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004947.1
OG0005334
Physical Location & Seq
Reverse (-)
91976 .. 93672
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004947.1_g000024.1.cds

Sequence Viewer

Length: 579 bp
atgtggaggcgcgtggctgcactctctcctctgatttcccactcaaaaccctccattcataaccaggcagcttccacattcaagatttgggaatcatttacctcacaatcagagacagtaactccgtcgaaagctgctccattcattactttcgtgttgggtggccctggtagtgggaaaggtactcaatgtgctaagatagttgaggcatttgggttcactcatgtgagtgcagggggtctgttgaggagggaaattgcttctaatagcgcatatggcgaggagaaccgcaaggcatttgaagaagttattggagcagaaccggatgttgtacttttcttcgactgttctgaacaagagatgggccgagttgatgataatattgaaacaatcaagaaacggcttgaagggtttgatgaattgaattggcctatagtcaattactacacacagaggggaaaacttcacagggagagttcgacattcaagggtgttttaatgttggtgatcaatgcagtgggaacagtagatgaaatatttgaaaaagttcgccctatttttgctgcgctgagcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00240 ko00983 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00240 map00983 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ADK

Protein Analysis

192

Amino Acids

21.23

Weight (kDa)

6.44

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 1 cut(s) 289
AfaI GTAC 2 cut(s) 184, 333
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 7 cut(s) 82, 302, 386, 407, 424, 487, 542
AjnI CCWGG 2 cut(s) 63, 166
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 2 cut(s) 71, 134
AluI AGCT 2 cut(s) 71, 134
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 3 cut(s) 163, 364, 428
ApeKI GCWGC 4 cut(s) 17, 68, 134, 563
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 3 cut(s) 12, 272, 568
AspS9I GGNCC 2 cut(s) 164, 364
AsuHPI GGTGA 1 cut(s) 517
BbvI GCAGC 4 cut(s) 4, 80, 121, 550
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 2 cut(s) 65, 168
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 4 cut(s) 18, 69, 135, 564
BlpI GCTNAGC 1 cut(s) 569
BlsI GCNGC 4 cut(s) 19, 70, 136, 565
Bme1390I CCNGG 2 cut(s) 65, 168
BmgT120I GGNCC 2 cut(s) 164, 364
BmrFI CCNGG 2 cut(s) 65, 168
Bpu1102I GCTNAGC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseBI CCWGG 2 cut(s) 65, 168
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 560
BseRI GAGGAG 3 cut(s) 18, 262, 296
BseXI GCAGC 4 cut(s) 4, 80, 121, 550
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 165, 366, 430
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 3 cut(s) 165, 366, 430
Bsp143I GATC 1 cut(s) 507
Bsp1720I GCTNAGC 1 cut(s) 569
BspACI CCGC 1 cut(s) 289
BspANI GGCC 3 cut(s) 165, 366, 430
BspCNI CTCAG 1 cut(s) 561
BspFNI CGCG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 507
Bst2UI CCWGG 2 cut(s) 65, 168
Bst4CI ACNGT 3 cut(s) 118, 347, 526
BstDEI CTNAG 2 cut(s) 195, 569
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 3 cut(s) 12, 272, 568
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNI CCWGG 2 cut(s) 65, 168
BstSCI CCNGG 2 cut(s) 63, 166
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 4 cut(s) 4, 80, 121, 550
BsuRI GGCC 3 cut(s) 165, 366, 430
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
CfoI GCGC 3 cut(s) 12, 272, 568
Cfr13I GGNCC 2 cut(s) 164, 364
Csp6I GTAC 2 cut(s) 183, 332
CviAII CATG 1 cut(s) 224
CviJI RGCY 7 cut(s) 17, 71, 134, 165, 366, 403, 430
CviKI_1 RGCY 7 cut(s) 17, 71, 134, 165, 366, 403, 430
CviQI GTAC 2 cut(s) 183, 332
DdeI CTNAG 2 cut(s) 195, 569
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 63, 166
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 60, 225, 274, 276, 434
FatI CATG 1 cut(s) 223
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 4 cut(s) 18, 69, 135, 564
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 18, 69, 135, 564
GlaI GCGC 3 cut(s) 11, 271, 567
GluI GCNGC 4 cut(s) 18, 69, 135, 564
HaeIII GGCC 3 cut(s) 165, 366, 430
HapII CCGG 1 cut(s) 323
HhaI GCGC 3 cut(s) 12, 272, 568
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 3 cut(s) 10, 270, 566
HinP1I GCGC 3 cut(s) 10, 270, 566
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 3 cut(s) 33, 112, 352
Hpy188III TCNNGA 2 cut(s) 82, 394
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 3 cut(s) 118, 347, 526
HpyCH4V TGCA 3 cut(s) 20, 233, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 2 cut(s) 195, 569
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 3 cut(s) 10, 270, 566
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 1 cut(s) 507
LmnI GCTCC 2 cut(s) 142, 314
LpnPI CCDG 7 cut(s) 50, 77, 153, 180, 219, 336, 454
Lsp1109I GCAGC 4 cut(s) 4, 80, 121, 550
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 2 cut(s) 314, 331
MluCI AATT 4 cut(s) 255, 419, 424, 439
MnlI CCTC 8 cut(s) 39, 61, 112, 199, 240, 243, 274, 447
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 1 cut(s) 497
MslI CAYNNNNRTG 2 cut(s) 224, 228
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 65, 168
MvaI CCWGG 2 cut(s) 65, 168
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 276
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 507
NlaIII CATG 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 392
OliI CACNNNNGTG 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 19, 70, 136, 565
Psp6I CCWGG 2 cut(s) 63, 166
PspGI CCWGG 2 cut(s) 63, 166
PspPI GGNCC 2 cut(s) 164, 364
RsaI GTAC 2 cut(s) 184, 333
RsaNI GTAC 2 cut(s) 183, 332
RseI CAYNNNNRTG 2 cut(s) 224, 228
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 4 cut(s) 18, 69, 135, 564
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 2 cut(s) 164, 364
ScrFI CCNGG 2 cut(s) 65, 168
SetI ASST 4 cut(s) 73, 104, 136, 184
SfcI CTRYAG 1 cut(s) 432
SmiMI CAYNNNNRTG 2 cut(s) 224, 228
Sse9I AATT 4 cut(s) 255, 419, 424, 439
SsiI CCGC 1 cut(s) 289
SspI AATATT 2 cut(s) 382, 537
StyD4I CCNGG 2 cut(s) 63, 166
TaaI ACNGT 3 cut(s) 118, 347, 526
TaqI TCGA 3 cut(s) 128, 342, 479
TasI AATT 4 cut(s) 255, 419, 424, 439
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 1 cut(s) 522
TseI GCWGC 4 cut(s) 17, 68, 134, 563
TspDTI ATGAA 4 cut(s) 47, 133, 432, 546
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.