Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005334

Physical Location & Seq

Genomic Coordinates Reverse (-)

20742327 .. 20744823

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGAGGCGCGTGGCTTCACTCTCCCCTCTCATTTCCCATTCTAAACCCTCCGCTCATAACCAGGCAGCTTCCGCATTCAAGATTTGCGAATCATTTACCTCACAATCAGAGACAGTAACTCCGTCAAAAGCTGCTCCGTTCATAACTTTTGTGTTGGGTGGCCCTGGTAGTGGGAAGGGTACTCAATGTGCTAAGATAGTTGAGGCATTTGGGTTCACTCATGTGAGTGCAGGGGATCTGCTGAGGAGGGAAATTGCTTCGAACAGCGCATATGGCTCTGTGATTCTTGCAACGATTAGAGAAGGAAAGATAGTTCCCTCTCAAGTGACGGTCCAGCTCATTCTAAAGGAGATGGAAGCGAGTGATAATTGCAAGTTCCTCATTGATGGGTTCCCGAGGAGTGAGGAGAACCGCAAGGCATTTGAACATGTTATTGGAGCGGAACCGGATGTTGTTCTTTTCTTTGACTGTCCTGAACAAGAGATGGTAAAGCGAGTGCTAAATCGTAATCAGGGACGAATCGATGATAATATTGAAACAATCAAGAAACGGCTTGAAGTGTTTGATGAATTGAATTGGCCTATTGTCAATTACTACACACAGAGGGGGAAACTTCACAGGATCAATGCAGTTGGAACAGTTGATGAAATATTTGAAAAGGTTCGCCCAATTTTCGCTGCACTGAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00240 ko00983 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00240 map00983 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ADK

Protein Analysis

232

Amino Acids

25.7

Weight (kDa)

8.33

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	51 - 180	1.2e-06	AAA domain
ADK	PF00406	52 - 204	1.9e-45	Adenylate kinase
AAA_17	PF13207	53 - 183	6.9e-33	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25280 AT4G25280
fragaria_vesca	FvH4_7g27880 FvH4_7g27880 FvH4_7g27880
malus_domestica	MD00G1104800.v1.1 MD07G1256100.v1.1
prunus_persica	Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1
pyrus_communis	pycom01g19570 pycom07g22900
rosa_chinensis	RchiOBHm_Chr1g0374821
rosa_laevigata	RLG00000026712
rosa_multiflora	Rmu_co8168376.1_g000001 Rmu_sc0002063.1_g000006 Rmu_sc0004947.1_g000024
rosa_roxburghii	Rroxscaffold_4G00283260
rosa_rugosa	Rorug01G0385100
rosa_samantha	Rh1AG396600 Rh1BG360700 Rh1CG374100 Rh1DG391500
rosa_wichuraiana	Rw1G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	681
AccBSI	CCGCTC	2 cut(s)	56, 443
AccII	CGCG	1 cut(s)	12
AciI	CCGC	4 cut(s)	54, 75, 415, 443
AclWI	GGATC	2 cut(s)	246, 632
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	6 cut(s)	82, 428, 539, 560, 577, 659
AjnI	CCWGG	2 cut(s)	63, 166
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AleI	CACNNNNGTG	1 cut(s)	224
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	71, 134, 340
AluI	AGCT	3 cut(s)	71, 134, 340
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	246, 632
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	163, 581
ApeKI	GCWGC	3 cut(s)	68, 134, 680
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	2 cut(s)	12, 272
AspS9I	GGNCC	2 cut(s)	164, 334
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	80, 121, 667
BccI	CCATC	3 cut(s)	349, 383, 481
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	65, 168
BcoDI	GTCTC	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	681
BisI	GCNGC	3 cut(s)	69, 135, 681
BlsI	GCNGC	3 cut(s)	70, 136, 682
Bme1390I	CCNGG	2 cut(s)	65, 168
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	164, 334
BmiI	GGNNCC	2 cut(s)	395, 447
BmrFI	CCNGG	2 cut(s)	65, 168
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	166, 398
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	65, 168
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	166, 398
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	236, 677
BseRI	GAGGAG	3 cut(s)	262, 415, 422
BseXI	GCAGC	3 cut(s)	80, 121, 667
BsgI	GTGCAG	2 cut(s)	252, 666
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	165, 583
BshVI	ATCGAT	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	165, 583
BsoBI	CYCGRG	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	238, 624
BspACI	CCGC	4 cut(s)	54, 75, 415, 443
BspANI	GGCC	2 cut(s)	165, 583
BspCNI	CTCAG	2 cut(s)	237, 678
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	395, 447
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	246, 632
BspT104I	TTCGAA	1 cut(s)	263
BsrBI	CCGCTC	2 cut(s)	56, 443
BssECI	CCNNGG	2 cut(s)	166, 398
BssMI	GATC	2 cut(s)	238, 624
Bst2UI	CCWGG	2 cut(s)	65, 168
Bst4CI	ACNGT	4 cut(s)	118, 334, 473, 643
BstBI	TTCGAA	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	195, 245, 686
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	12, 272
BstKTI	GATC	2 cut(s)	241, 627
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	238, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 276
BstNI	CCWGG	2 cut(s)	65, 168
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	63, 166
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	80, 121, 667
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	165, 583
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	683
BveI	ACCTGC	1 cut(s)	681
CfoI	GCGC	2 cut(s)	12, 272
Cfr13I	GGNCC	2 cut(s)	164, 334
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	224, 431
CviJI	RGCY	8 cut(s)	17, 71, 134, 165, 279, 340, 556, 583
CviKI_1	RGCY	8 cut(s)	17, 71, 134, 165, 279, 340, 556, 583
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	195, 245, 686
DpnI	GATC	2 cut(s)	240, 626
DpnII	GATC	2 cut(s)	238, 624
Eco47I	GGWCC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	63, 166
FaeI	CATG	2 cut(s)	227, 434
FaiI	YATR	6 cut(s)	60, 146, 225, 274, 276, 432
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	2 cut(s)	223, 430
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	69, 135, 681
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	69, 135, 681
GlaI	GCGC	2 cut(s)	11, 271
GluI	GCNGC	3 cut(s)	69, 135, 681
HaeIII	GGCC	2 cut(s)	165, 583
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	12, 272
Hin1II	CATG	2 cut(s)	227, 434
Hin6I	GCGC	2 cut(s)	10, 270
HinP1I	GCGC	2 cut(s)	10, 270
HinfI	GANTC	3 cut(s)	92, 286, 522
HpaII	CCGG	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	4 cut(s)	82, 397, 476, 547
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	172, 299
HpyCH4III	ACNGT	4 cut(s)	118, 334, 473, 643
HpyCH4V	TGCA	5 cut(s)	233, 293, 375, 632, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 276
HpyF3I	CTNAG	3 cut(s)	195, 245, 686
Hsp92II	CATG	2 cut(s)	227, 434
HspAI	GCGC	2 cut(s)	10, 270
Kzo9I	GATC	2 cut(s)	238, 624
LmnI	GCTCC	2 cut(s)	142, 440
Lsp1109I	GCAGC	3 cut(s)	80, 121, 667
MaeIII	GTNAC	2 cut(s)	118, 328
MalI	GATC	2 cut(s)	240, 626
MbiI	CCGCTC	2 cut(s)	56, 443
MboI	GATC	2 cut(s)	238, 624
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	6 cut(s)	255, 370, 572, 577, 592, 672
MmeI	TCCRAC	1 cut(s)	616
MroXI	GAANNNNTTC	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	224, 228
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	65, 168
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	65, 168
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	74, 276
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	238, 624
NlaIII	CATG	2 cut(s)	227, 434
NlaIV	GGNNCC	2 cut(s)	395, 447
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	263
OliI	CACNNNNGTG	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	681
PciI	ACATGT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	92, 286, 522
PkrI	GCNGC	3 cut(s)	70, 136, 682
PscI	ACATGT	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	63, 166
PspGI	CCWGG	2 cut(s)	63, 166
PspN4I	GGNNCC	2 cut(s)	395, 447
PspPI	GGNCC	2 cut(s)	164, 334
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	2 cut(s)	224, 228
SatI	GCNGC	3 cut(s)	69, 135, 681
Sau3AI	GATC	2 cut(s)	238, 624
Sau96I	GGNCC	2 cut(s)	164, 334
ScrFI	CCNGG	2 cut(s)	65, 168
SetI	ASST	6 cut(s)	73, 104, 136, 342, 666, 695
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	2 cut(s)	224, 228
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	6 cut(s)	255, 370, 572, 577, 592, 672
SsiI	CCGC	4 cut(s)	54, 75, 415, 443
SspI	AATATT	2 cut(s)	535, 654
StyD4I	CCNGG	2 cut(s)	63, 166
TaaI	ACNGT	4 cut(s)	118, 334, 473, 643
TaqI	TCGA	2 cut(s)	263, 525
TasI	AATT	6 cut(s)	255, 370, 572, 577, 592, 672
TfiI	GAWTC	3 cut(s)	92, 286, 522
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	68, 134, 680
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	133, 585, 663
TspGWI	ACGGA	2 cut(s)	114, 129
TspRI	CASTG	1 cut(s)	690
VpaK11BI	GGWCC	1 cut(s)	334
XceI	RCATGY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.