Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005334

Physical Location & Seq

Genomic Coordinates Reverse (-)

18208101 .. 18210531

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19570.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATGATGACAACCATGATGACGAAGAAAAGAAGAATTGTGGCCCATAAACATGCGGTGCACTGCACCCCCACCAGGATTGGTGGATTGACGTACCAACGTGCGGTGGGAGAAACTTTTGTTTGTGACGGCAATATGGATGACACATTACGTATCACTTCGTGTACCAATCAAATTAAAAAATCTCTCGTGTGGTGGACCCCACCAAGGAGGCAATCATGCAATCTACCTGTTCGACGTAATGCCTCAGTGAAAACCGTCAACCAAAAAGCTAAACCAATCGGAGCAGCTCAACGCTACAGAGACATGTGGAGGCGCGTGGCTTCACTTTCTCCTCTGGTTTCTCGCTCGAAACCCTCAAAACTTAGCCAGGAAGCATGTACGTTCAAGGTTTGGGAATCTTTTTCCTCGGAATCCCAGATTCCAACGCCGCCAAAGGTTGCTCCGTTTATAACTTTTGTGCTAGGTGGTCCTGGTAGTGGAAAAGGTACTCAGTGTGCGAAGATAGTCGAGGAATTTGGGTTCACTCATATCAGTGCAGGGGATCTGTTGAGGAGGGAAATAGCTTCCAATAGCGCATACGGCTCGGTGATTCTTAGCACAATTAGGGAAGGAAAAATTGTTCCCTCTCAAGTGACAGTGCAGCTCATTCGAAAGGAGATGGAATCAAGTGACAATGATAAGTTTCTCATTGATGGCTTCCCTCGAAGTGAGGAGAACCGCGAGGCATTTGAACAAATTATTGGCAGAGAACCAAATGTTGTGCTTTTCTTTGACTGCCCTGAACAGGAGATGGTGAAGCGAGTGCTAAATCGTAATCAGGGCCGAGTTGATGATAACATTGACACAATAAAAAAACGTCTTGAAATATTTGATGAATTAAATTGGCCTGTTATCAATCACTATTCAAAGACAGGAAAACTTCACAAGATCAATGCTGTGGGAACGGTGGATGACATATTTGAAAAAGTTCGGCCAATTTTTGCTGCGCTGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00240 ko00983 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00240 map00983 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ADK

Protein Analysis

334

Amino Acids

37.63

Weight (kDa)

9.66

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25280 AT4G25280
fragaria_vesca	FvH4_7g27880 FvH4_7g27880 FvH4_7g27880
malus_domestica	MD00G1104800.v1.1 MD07G1256100.v1.1
prunus_persica	Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1 Prupe.8G036000_v2.0.a1
pyrus_communis	pycom01g19570 pycom07g22900
rosa_chinensis	RchiOBHm_Chr1g0374821
rosa_laevigata	RLG00000026712
rosa_multiflora	Rmu_co8168376.1_g000001 Rmu_sc0002063.1_g000006 Rmu_sc0004947.1_g000024
rosa_roxburghii	Rroxscaffold_4G00283260
rosa_rugosa	Rorug01G0385100
rosa_samantha	Rh1AG396600 Rh1BG360700 Rh1CG374100 Rh1DG391500
rosa_wichuraiana	Rw1G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccII	CGCG	2 cut(s)	318, 723
AciI	CCGC	4 cut(s)	56, 104, 431, 721
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	974
AcsI	RAATTY	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	4 cut(s)	95, 166, 382, 490
AfiI	CCNNNNNNNGG	5 cut(s)	75, 103, 207, 479, 787
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	5 cut(s)	388, 734, 866, 909, 965
AjnI	CCWGG	3 cut(s)	74, 369, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AloI	GAACNNNNNNTCC	4 cut(s)	506, 538, 606, 638
AluBI	AGCT	4 cut(s)	272, 290, 566, 646
AluI	AGCT	4 cut(s)	272, 290, 566, 646
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	297
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	552
AoxI	GGCC	4 cut(s)	42, 823, 887, 974
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	287, 643, 986
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	3 cut(s)	318, 578, 991
AspS9I	GGNCC	4 cut(s)	43, 198, 470, 823
AsuHPI	GGTGA	2 cut(s)	601, 808
AsuII	TTCGAA	1 cut(s)	652
AvaII	GGWCC	2 cut(s)	198, 470
BaeGI	GKGCMC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	299, 655, 973
BccI	CCATC	3 cut(s)	655, 689, 787
BceAI	ACGGC	2 cut(s)	145, 598
BcgI	CGANNNNNNTGC	4 cut(s)	567, 601, 632, 666
BciT130I	CCWGG	3 cut(s)	76, 371, 474
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	4 cut(s)	288, 431, 644, 987
BlpI	GCTNAGC	1 cut(s)	992
BlsI	GCNGC	4 cut(s)	289, 432, 645, 988
Bme1390I	CCNGG	3 cut(s)	76, 371, 474
Bme18I	GGWCC	2 cut(s)	198, 470
BmgT120I	GGNCC	4 cut(s)	43, 198, 470, 823
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	3 cut(s)	76, 371, 474
Bpu1102I	GCTNAGC	1 cut(s)	992
Bpu14I	TTCGAA	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	206, 408
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 103, 207, 479, 787
BseBI	CCWGG	3 cut(s)	76, 371, 474
BseDI	CCNNGG	2 cut(s)	206, 408
BseGI	GGATG	2 cut(s)	145, 958
BseLI	CCNNNNNNNGG	5 cut(s)	75, 103, 207, 479, 787
BseMII	CTCAG	3 cut(s)	261, 506, 983
BseRI	GAGGAG	3 cut(s)	324, 568, 728
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	299, 655, 973
BsgI	GTGCAG	3 cut(s)	49, 558, 662
Bsh1236I	CGCG	2 cut(s)	318, 723
BshFI	GGCC	4 cut(s)	44, 825, 889, 976
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	5 cut(s)	75, 103, 207, 479, 787
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	44, 825, 889, 976
Bsp119I	TTCGAA	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	544, 930
Bsp1720I	GCTNAGC	1 cut(s)	992
BspACI	CCGC	4 cut(s)	56, 104, 431, 721
BspANI	GGCC	4 cut(s)	44, 825, 889, 976
BspCNI	CTCAG	3 cut(s)	260, 505, 984
BspFNI	CGCG	2 cut(s)	318, 723
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	206, 408
BssMI	GATC	2 cut(s)	544, 930
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	3 cut(s)	76, 371, 474
Bst4CI	ACNGT	3 cut(s)	259, 640, 949
BstBAI	YACGTR	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	652
BstDEI	CTNAG	5 cut(s)	247, 365, 492, 596, 992
BstF5I	GGATG	2 cut(s)	145, 958
BstFNI	CGCG	2 cut(s)	318, 723
BstHHI	GCGC	3 cut(s)	318, 578, 991
BstKTI	GATC	2 cut(s)	547, 933
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	544, 930
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	3 cut(s)	76, 371, 474
BstNSI	RCATGY	3 cut(s)	56, 310, 381
BstSCI	CCNGG	3 cut(s)	74, 369, 472
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	63
BstSNI	TACGTA	1 cut(s)	152
BstUI	CGCG	2 cut(s)	318, 723
BstV1I	GCAGC	3 cut(s)	299, 655, 973
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	44, 825, 889, 976
BtsCI	GGATG	2 cut(s)	145, 958
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	5 cut(s)	61, 255, 500, 541, 645
CfoI	GCGC	3 cut(s)	318, 578, 991
Cfr13I	GGNCC	4 cut(s)	43, 198, 470, 823
Csp6I	GTAC	4 cut(s)	94, 165, 381, 489
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	5 cut(s)	16, 53, 219, 307, 378
CviQI	GTAC	4 cut(s)	94, 165, 381, 489
DdeI	CTNAG	5 cut(s)	247, 365, 492, 596, 992
DpnI	GATC	2 cut(s)	546, 932
DpnII	GATC	2 cut(s)	544, 930
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	974
Eco105I	TACGTA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	198, 470
EcoRII	CCWGG	3 cut(s)	74, 369, 472
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	5 cut(s)	19, 56, 222, 310, 381
FatI	CATG	5 cut(s)	15, 52, 218, 306, 377
Fnu4HI	GCNGC	4 cut(s)	288, 431, 644, 987
FokI	GGATG	2 cut(s)	152, 965
Fsp4HI	GCNGC	4 cut(s)	288, 431, 644, 987
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	3 cut(s)	317, 577, 990
GluI	GCNGC	4 cut(s)	288, 431, 644, 987
HaeIII	GGCC	4 cut(s)	44, 825, 889, 976
HhaI	GCGC	3 cut(s)	318, 578, 991
Hin1II	CATG	5 cut(s)	19, 56, 222, 310, 381
Hin6I	GCGC	3 cut(s)	316, 576, 989
HinP1I	GCGC	3 cut(s)	316, 576, 989
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	5 cut(s)	398, 413, 421, 592, 665
HphI	GGTGA	2 cut(s)	601, 808
Hpy166II	GTNNAC	5 cut(s)	61, 165, 198, 262, 525
Hpy188I	TCNGA	2 cut(s)	284, 412
Hpy188III	TCNNGA	1 cut(s)	863
Hpy8I	GTNNAC	5 cut(s)	61, 165, 198, 262, 525
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	3 cut(s)	259, 640, 949
HpyCH4IV	ACGT	6 cut(s)	92, 100, 151, 238, 383, 859
HpyCH4V	TGCA	5 cut(s)	61, 66, 222, 539, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	5 cut(s)	247, 365, 492, 596, 992
HpySE526I	ACGT	6 cut(s)	92, 100, 151, 238, 383, 859
Hsp92II	CATG	5 cut(s)	19, 56, 222, 310, 381
HspAI	GCGC	3 cut(s)	316, 576, 989
Kzo9I	GATC	2 cut(s)	544, 930
LmnI	GCTCC	2 cut(s)	284, 448
Lsp1109I	GCAGC	3 cut(s)	299, 655, 973
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	6 cut(s)	92, 100, 151, 238, 383, 859
MaeIII	GTNAC	3 cut(s)	125, 634, 671
MalI	GATC	2 cut(s)	546, 932
MboI	GATC	2 cut(s)	544, 930
MboII	GAAGA	3 cut(s)	37, 45, 514
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	9 cut(s)	36, 174, 515, 603, 618, 738, 878, 883, 978
MmeI	TCCRAC	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	2 cut(s)	177, 881
MslI	CAYNNNNRTG	2 cut(s)	51, 534
MspR9I	CCNGG	3 cut(s)	76, 371, 474
MvaI	CCWGG	3 cut(s)	76, 371, 474
MvnI	CGCG	2 cut(s)	318, 723
MwoI	GCNNNNNNNGC	1 cut(s)	582
NdeII	GATC	2 cut(s)	544, 930
NlaIII	CATG	5 cut(s)	19, 56, 222, 310, 381
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	851
NmuCI	GTSAC	3 cut(s)	125, 634, 671
NspI	RCATGY	3 cut(s)	56, 310, 381
NspV	TTCGAA	1 cut(s)	652
PciI	ACATGT	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	5 cut(s)	398, 413, 421, 592, 665
PkrI	GCNGC	4 cut(s)	289, 432, 645, 988
Ppu21I	YACGTR	1 cut(s)	152
PscI	ACATGT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	452
Psp6I	CCWGG	3 cut(s)	74, 369, 472
PspGI	CCWGG	3 cut(s)	74, 369, 472
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	4 cut(s)	43, 198, 470, 823
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	4 cut(s)	95, 166, 382, 490
RsaNI	GTAC	4 cut(s)	94, 165, 381, 489
RseI	CAYNNNNRTG	2 cut(s)	51, 534
SaqAI	TTAA	2 cut(s)	177, 881
SatI	GCNGC	4 cut(s)	288, 431, 644, 987
Sau3AI	GATC	2 cut(s)	544, 930
Sau96I	GGNCC	4 cut(s)	43, 198, 470, 823
ScrFI	CCNGG	3 cut(s)	76, 371, 474
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	652
SinI	GGWCC	2 cut(s)	198, 470
SmiMI	CAYNNNNRTG	2 cut(s)	51, 534
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	9 cut(s)	36, 174, 515, 603, 618, 738, 878, 883, 978
SsiI	CCGC	4 cut(s)	56, 104, 431, 721
SspI	AATATT	1 cut(s)	870
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	74, 369, 472
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	259, 640, 949
TaiI	ACGT	6 cut(s)	95, 103, 154, 241, 386, 862
TaqI	TCGA	5 cut(s)	235, 350, 510, 652, 706
TasI	AATT	9 cut(s)	36, 174, 515, 603, 618, 738, 878, 883, 978
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	5 cut(s)	398, 413, 421, 592, 665
Tru1I	TTAA	2 cut(s)	177, 881
Tru9I	TTAA	2 cut(s)	177, 881
TscAI	CASTG	5 cut(s)	68, 255, 500, 541, 645
TseFI	GTSAC	3 cut(s)	125, 634, 671
TseI	GCWGC	3 cut(s)	287, 643, 986
Tsp45I	GTSAC	3 cut(s)	125, 634, 671
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	5 cut(s)	68, 255, 500, 541, 645
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	198, 470
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	3 cut(s)	56, 310, 381
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.