methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25730 |
| fragaria_vesca | FvH4_2g09160 |
| malus_domestica | MD05G1064300.v1.1 MD10G1073000.v1.1 |
| prunus_persica | Prupe.8G094400_v2.0.a1 |
| pyrus_communis | pycom05g05540 pycom10g05760 |
| rosa_chinensis | RchiOBHm_Chr6g0265021 |
| rosa_laevigata | RLG00000014215 RLG00000014220 |
| rosa_multiflora | Rmu_sc0002934.1_g000022 |
| rosa_roxburghii | Rroxscaffold_175G00432100 |
| rosa_rugosa | Rorug06G0013800 |
| rosa_samantha | Rh6AG136200 Rh6BG133000 Rh6CG131600 Rh6DG118800 |
| rosa_wichuraiana | Rw6G011740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 368, 1617 |
| AccBSI | CCGCTC | 1 cut(s) | 1411 |
| AccI | GTMKAC | 1 cut(s) | 1194 |
| AccII | CGCG | 1 cut(s) | 1147 |
| AciI | CCGC | 6 cut(s) | 153, 551, 1090, 1147, 1411, 1453 |
| AclWI | GGATC | 2 cut(s) | 617, 709 |
| AcsI | RAATTY | 2 cut(s) | 460, 891 |
| AcuI | CTGAAG | 3 cut(s) | 77, 1302, 1881 |
| AcyI | GRCGYC | 1 cut(s) | 102 |
| AfaI | GTAC | 4 cut(s) | 38, 110, 1176, 1569 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 245, 368, 917, 1016, 1597, 1617, 2121, 2212 |
| AflIII | ACRYGT | 1 cut(s) | 1962 |
| AgsI | TTSAA | 8 cut(s) | 530, 539, 598, 934, 1181, 1752, 2074, 2211 |
| AjnI | CCWGG | 1 cut(s) | 157 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1604, 1636 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 48, 80 |
| Alw21I | GWGCWC | 1 cut(s) | 507 |
| Alw26I | GTCTC | 5 cut(s) | 50, 363, 483, 489, 1653 |
| AlwI | GGATC | 2 cut(s) | 617, 709 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 572, 1841 |
| Ama87I | CYCGRG | 4 cut(s) | 72, 486, 2445, 2459 |
| AoxI | GGCC | 5 cut(s) | 1464, 1881, 2112, 2413, 2429 |
| ApeKI | GCWGC | 6 cut(s) | 201, 316, 770, 2011, 2135, 2246 |
| ApoI | RAATTY | 2 cut(s) | 460, 891 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 929 |
| AspLEI | GCGC | 3 cut(s) | 152, 1147, 1439 |
| AspS9I | GGNCC | 3 cut(s) | 1160, 1465, 1588 |
| AsuC2I | CCSGG | 3 cut(s) | 2379, 2460, 2461 |
| AsuHPI | GGTGA | 3 cut(s) | 460, 1432, 1502 |
| AvaI | CYCGRG | 4 cut(s) | 72, 486, 2445, 2459 |
| AvaII | GGWCC | 2 cut(s) | 1160, 1588 |
| BaeGI | GKGCMC | 2 cut(s) | 385, 2402 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1502, 1534 |
| BauI | CACGAG | 1 cut(s) | 673 |
| BbsI | GAAGAC | 3 cut(s) | 623, 1305, 1689 |
| Bbv12I | GWGCWC | 1 cut(s) | 507 |
| BbvCI | CCTCAGC | 1 cut(s) | 1913 |
| BbvI | GCAGC | 6 cut(s) | 213, 328, 757, 2023, 2122, 2258 |
| BccI | CCATC | 8 cut(s) | 304, 347, 719, 731, 1162, 1178, 1487, 1574 |
| BceAI | ACGGC | 4 cut(s) | 119, 164, 1265, 1631 |
| BciT130I | CCWGG | 1 cut(s) | 159 |
| BclI | TGATCA | 2 cut(s) | 838, 1771 |
| BcnI | CCSGG | 3 cut(s) | 2379, 2460, 2461 |
| BcoDI | GTCTC | 5 cut(s) | 50, 363, 483, 489, 1653 |
| BfaI | CTAG | 2 cut(s) | 558, 1458 |
| BfmI | CTRYAG | 1 cut(s) | 573 |
| BglII | AGATCT | 1 cut(s) | 1237 |
| BisI | GCNGC | 8 cut(s) | 153, 202, 317, 551, 771, 2012, 2136, 2247 |
| BlsI | GCNGC | 8 cut(s) | 154, 203, 318, 552, 772, 2013, 2137, 2248 |
| BmcAI | AGTACT | 2 cut(s) | 38, 110 |
| Bme1390I | CCNGG | 4 cut(s) | 159, 2379, 2460, 2461 |
| Bme18I | GGWCC | 2 cut(s) | 1160, 1588 |
| BmeT110I | CYCGRG | 4 cut(s) | 72, 486, 2445, 2459 |
| BmgT120I | GGNCC | 3 cut(s) | 1160, 1465, 1588 |
| BmrFI | CCNGG | 4 cut(s) | 159, 2379, 2460, 2461 |
| BmsI | GCATC | 6 cut(s) | 31, 159, 578, 773, 1926, 1936 |
| BpiI | GAAGAC | 3 cut(s) | 623, 1305, 1689 |
| BpmI | CTGGAG | 1 cut(s) | 1502 |
| Bpu10I | CCTNAGC | 4 cut(s) | 51, 1005, 1134, 1913 |
| BpuMI | CCSGG | 3 cut(s) | 2379, 2460, 2461 |
| Bsa29I | ATCGAT | 2 cut(s) | 219, 1515 |
| BsaHI | GRCGYC | 1 cut(s) | 102 |
| BsaI | GGTCTC | 2 cut(s) | 363, 489 |
| BsaJI | CCNNGG | 9 cut(s) | 157, 471, 1303, 1647, 1878, 2115, 2264, 2444, 2459 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2286, 2316 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 245, 368, 917, 1016, 1597, 1617, 2121, 2212 |
| Bse118I | RCCGGY | 1 cut(s) | 553 |
| Bse1I | ACTGG | 5 cut(s) | 1162, 1615, 1896, 2280, 2407 |
| Bse3DI | GCAATG | 2 cut(s) | 1282, 2064 |
| BseBI | CCWGG | 1 cut(s) | 159 |
| BseCI | ATCGAT | 2 cut(s) | 219, 1515 |
| BseDI | CCNNGG | 9 cut(s) | 157, 471, 1303, 1647, 1878, 2115, 2264, 2444, 2459 |
| BseGI | GGATG | 7 cut(s) | 174, 694, 1177, 1552, 1853, 2005, 2346 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 245, 368, 917, 1016, 1597, 1617, 2121, 2212 |
| BseMI | GCAATG | 2 cut(s) | 1282, 2064 |
| BseMII | CTCAG | 7 cut(s) | 138, 273, 429, 972, 996, 1860, 1904 |
| BseNI | ACTGG | 5 cut(s) | 1162, 1615, 1896, 2280, 2407 |
| BseRI | GAGGAG | 1 cut(s) | 896 |
| BseSI | GKGCMC | 2 cut(s) | 385, 2402 |
| BseXI | GCAGC | 6 cut(s) | 213, 328, 757, 2023, 2122, 2258 |
| BseYI | CCCAGC | 1 cut(s) | 2435 |
| BsgI | GTGCAG | 2 cut(s) | 332, 1809 |
| Bsh1236I | CGCG | 1 cut(s) | 1147 |
| BshFI | GGCC | 5 cut(s) | 1466, 1883, 2114, 2415, 2431 |
| BshVI | ATCGAT | 2 cut(s) | 219, 1515 |
| BsiHKAI | GWGCWC | 1 cut(s) | 507 |
| BsiHKCI | CYCGRG | 4 cut(s) | 72, 486, 2445, 2459 |
| BsiSI | CCGG | 3 cut(s) | 554, 2379, 2460 |
| BslFI | GGGAC | 3 cut(s) | 212, 1805, 2331 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 245, 368, 917, 1016, 1597, 1617, 2121, 2212 |
| BsmAI | GTCTC | 5 cut(s) | 50, 363, 483, 489, 1653 |
| BsmBI | CGTCTC | 1 cut(s) | 50 |
| BsmFI | GGGAC | 3 cut(s) | 212, 1805, 2331 |
| BsmI | GAATGC | 1 cut(s) | 960 |
| BsnI | GGCC | 5 cut(s) | 1466, 1883, 2114, 2415, 2431 |
| Bso31I | GGTCTC | 2 cut(s) | 363, 489 |
| BsoBI | CYCGRG | 4 cut(s) | 72, 486, 2445, 2459 |
| Bsp1286I | GDGCHC | 3 cut(s) | 385, 507, 2402 |
| Bsp19I | CCATGG | 1 cut(s) | 1303 |
| BspACI | CCGC | 6 cut(s) | 153, 551, 1090, 1147, 1411, 1453 |
| BspANI | GGCC | 5 cut(s) | 1466, 1883, 2114, 2415, 2431 |
| BspCNI | CTCAG | 7 cut(s) | 137, 274, 430, 973, 997, 1859, 1905 |
| BspDI | ATCGAT | 2 cut(s) | 219, 1515 |
| BspFNI | CGCG | 1 cut(s) | 1147 |
| BspMAI | CTGCAG | 1 cut(s) | 577 |
| BspPI | GGATC | 2 cut(s) | 617, 709 |
| BspQI | GCTCTTC | 1 cut(s) | 1062 |
| BspTNI | GGTCTC | 2 cut(s) | 363, 489 |
| BsrBI | CCGCTC | 1 cut(s) | 1411 |
| BsrDI | GCAATG | 2 cut(s) | 1282, 2064 |
| BsrFI | RCCGGY | 1 cut(s) | 553 |
| BsrI | ACTGG | 5 cut(s) | 1162, 1615, 1896, 2280, 2407 |
| BssAI | RCCGGY | 1 cut(s) | 553 |
| BssECI | CCNNGG | 9 cut(s) | 157, 471, 1303, 1647, 1878, 2115, 2264, 2444, 2459 |
| BssNI | GRCGYC | 1 cut(s) | 102 |
| BssSI | CACGAG | 1 cut(s) | 673 |
| BssT1I | CCWWGG | 5 cut(s) | 471, 1303, 1878, 2115, 2264 |
| Bst2BI | CACGAG | 1 cut(s) | 673 |
| Bst2UI | CCWGG | 1 cut(s) | 159 |
| Bst4CI | ACNGT | 8 cut(s) | 512, 722, 1084, 1289, 1337, 1679, 2070, 2207 |
| Bst6I | CTCTTC | 6 cut(s) | 120, 751, 1062, 1380, 2318, 2339 |
| BstACI | GRCGYC | 1 cut(s) | 102 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 770 |
| BstC8I | GCNNGC | 9 cut(s) | 451, 555, 1401, 1455, 1464, 1781, 2133, 2413, 2433 |
| BstDSI | CCRYGG | 2 cut(s) | 1303, 1647 |
| BstF5I | GGATG | 7 cut(s) | 174, 694, 1177, 1552, 1853, 2005, 2346 |
| BstFNI | CGCG | 1 cut(s) | 1147 |
| BstHHI | GCGC | 3 cut(s) | 152, 1147, 1439 |
| BstMAI | GTCTC | 5 cut(s) | 50, 363, 483, 489, 1653 |
| BstNI | CCWGG | 1 cut(s) | 159 |
| BstNSI | RCATGY | 2 cut(s) | 1899, 1966 |
| BstSCI | CCNGG | 4 cut(s) | 157, 2377, 2458, 2459 |
| BstSFI | CTRYAG | 1 cut(s) | 573 |
| BstSLI | GKGCMC | 2 cut(s) | 385, 2402 |
| BstUI | CGCG | 1 cut(s) | 1147 |
| BstV1I | GCAGC | 6 cut(s) | 213, 328, 757, 2023, 2122, 2258 |
| BstV2I | GAAGAC | 3 cut(s) | 623, 1305, 1689 |
| BstX2I | RGATCY | 1 cut(s) | 1237 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2104 |
| BstYI | RGATCY | 1 cut(s) | 1237 |
| Bsu15I | ATCGAT | 2 cut(s) | 219, 1515 |
| BsuRI | GGCC | 5 cut(s) | 1466, 1883, 2114, 2415, 2431 |
| BsuTUI | ATCGAT | 2 cut(s) | 219, 1515 |
| BtgI | CCRYGG | 2 cut(s) | 1303, 1647 |
| BtgZI | GCGATG | 1 cut(s) | 915 |
| BtsCI | GGATG | 7 cut(s) | 174, 694, 1177, 1552, 1853, 2005, 2346 |
| BtsIMutI | CAGTG | 7 cut(s) | 435, 1294, 1342, 1371, 1622, 1684, 2400 |
| Cac8I | GCNNGC | 9 cut(s) | 451, 555, 1401, 1455, 1464, 1781, 2133, 2413, 2433 |
| CaiI | CAGNNNCTG | 2 cut(s) | 572, 1841 |
| CfoI | GCGC | 3 cut(s) | 152, 1147, 1439 |
| Cfr10I | RCCGGY | 1 cut(s) | 553 |
| Cfr13I | GGNCC | 3 cut(s) | 1160, 1465, 1588 |
| Cfr9I | CCCGGG | 1 cut(s) | 2459 |
| ClaI | ATCGAT | 2 cut(s) | 219, 1515 |
| CseI | GACGC | 2 cut(s) | 110, 271 |
| Csp6I | GTAC | 4 cut(s) | 37, 109, 1175, 1568 |
| CviAII | CATG | 7 cut(s) | 131, 320, 866, 1304, 1469, 1896, 1963 |
| CviQI | GTAC | 4 cut(s) | 37, 109, 1175, 1568 |
| DraI | TTTAAA | 1 cut(s) | 858 |
| Eam1104I | CTCTTC | 6 cut(s) | 120, 751, 1062, 1380, 2318, 2339 |
| EarI | CTCTTC | 6 cut(s) | 120, 751, 1062, 1380, 2318, 2339 |
| Eco130I | CCWWGG | 5 cut(s) | 471, 1303, 1878, 2115, 2264 |
| Eco147I | AGGCCT | 1 cut(s) | 2431 |
| Eco31I | GGTCTC | 2 cut(s) | 363, 489 |
| Eco32I | GATATC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 2 cut(s) | 1160, 1588 |
| Eco57I | CTGAAG | 3 cut(s) | 77, 1302, 1881 |
| Eco88I | CYCGRG | 4 cut(s) | 72, 486, 2445, 2459 |
| EcoRII | CCWGG | 1 cut(s) | 157 |
| EcoRV | GATATC | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 5 cut(s) | 471, 1303, 1878, 2115, 2264 |
| EcoT22I | ATGCAT | 1 cut(s) | 1951 |
| ErhI | CCWWGG | 5 cut(s) | 471, 1303, 1878, 2115, 2264 |
| Esp3I | CGTCTC | 1 cut(s) | 50 |
| FaeI | CATG | 7 cut(s) | 134, 323, 869, 1307, 1472, 1899, 1966 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 914, 946 |
| FaqI | GGGAC | 3 cut(s) | 212, 1805, 2331 |
| FatI | CATG | 7 cut(s) | 130, 319, 865, 1303, 1468, 1895, 1962 |
| FauI | CCCGC | 1 cut(s) | 1446 |
| FauNDI | CATATG | 1 cut(s) | 1405 |
| FbaI | TGATCA | 2 cut(s) | 838, 1771 |
| FblI | GTMKAC | 1 cut(s) | 1194 |
| Fnu4HI | GCNGC | 8 cut(s) | 153, 202, 317, 551, 771, 2012, 2136, 2247 |
| FokI | GGATG | 7 cut(s) | 181, 701, 1184, 1559, 1840, 2012, 2353 |
| Fsp4HI | GCNGC | 8 cut(s) | 153, 202, 317, 551, 771, 2012, 2136, 2247 |
| FspBI | CTAG | 2 cut(s) | 558, 1458 |
| GlaI | GCGC | 3 cut(s) | 151, 1146, 1438 |
| GluI | GCNGC | 8 cut(s) | 153, 202, 317, 551, 771, 2012, 2136, 2247 |
| GsaI | CCCAGC | 1 cut(s) | 2439 |
| GsuI | CTGGAG | 1 cut(s) | 1502 |
| HaeIII | GGCC | 5 cut(s) | 1466, 1883, 2114, 2415, 2431 |
| HapII | CCGG | 3 cut(s) | 554, 2379, 2460 |
| HgaI | GACGC | 2 cut(s) | 110, 271 |
| HhaI | GCGC | 3 cut(s) | 152, 1147, 1439 |
| Hin1I | GRCGYC | 1 cut(s) | 102 |
| Hin1II | CATG | 7 cut(s) | 134, 323, 869, 1307, 1472, 1899, 1966 |
| Hin6I | GCGC | 3 cut(s) | 150, 1145, 1437 |
| HinP1I | GCGC | 3 cut(s) | 150, 1145, 1437 |
| HincII | GTYRAC | 4 cut(s) | 1087, 1195, 1252, 1285 |
| HindII | GTYRAC | 4 cut(s) | 1087, 1195, 1252, 1285 |
| HindIII | AAGCTT | 1 cut(s) | 86 |
| HpaII | CCGG | 3 cut(s) | 554, 2379, 2460 |
| HphI | GGTGA | 3 cut(s) | 460, 1432, 1502 |
| Hpy166II | GTNNAC | 6 cut(s) | 1087, 1163, 1195, 1252, 1285, 1982 |
| Hpy8I | GTNNAC | 6 cut(s) | 1087, 1163, 1195, 1252, 1285, 1982 |
| Hpy99I | CGWCG | 4 cut(s) | 104, 185, 200, 1196 |
| HpyCH4III | ACNGT | 8 cut(s) | 512, 722, 1084, 1289, 1337, 1679, 2070, 2207 |
| HpyCH4IV | ACGT | 4 cut(s) | 58, 804, 1360, 2362 |
| HpySE526I | ACGT | 4 cut(s) | 58, 804, 1360, 2362 |
| Hsp92I | GRCGYC | 1 cut(s) | 102 |
| Hsp92II | CATG | 7 cut(s) | 134, 323, 869, 1307, 1472, 1899, 1966 |
| HspAI | GCGC | 3 cut(s) | 150, 1145, 1437 |
| KroI | GCCGGC | 1 cut(s) | 553 |
| KroNI | GCCGGC | 1 cut(s) | 555 |
| Ksp22I | TGATCA | 2 cut(s) | 838, 1771 |
| LguI | GCTCTTC | 1 cut(s) | 1062 |
| LmnI | GCTCC | 3 cut(s) | 313, 1313, 1796 |
| Lsp1109I | GCAGC | 6 cut(s) | 213, 328, 757, 2023, 2122, 2258 |
| LweI | GCATC | 6 cut(s) | 31, 159, 578, 773, 1926, 1936 |
| MaeI | CTAG | 2 cut(s) | 558, 1458 |
| MaeII | ACGT | 4 cut(s) | 58, 804, 1360, 2362 |
| MaeIII | GTNAC | 4 cut(s) | 253, 466, 1337, 2035 |
| MbiI | CCGCTC | 1 cut(s) | 1411 |
| MflI | RGATCY | 1 cut(s) | 1237 |
| MhlI | GDGCHC | 3 cut(s) | 385, 507, 2402 |
| MluCI | AATT | 5 cut(s) | 337, 460, 891, 1061, 1202 |
| MlyI | GAGTC | 5 cut(s) | 668, 752, 970, 1319, 1838 |
| MmeI | TCCRAC | 2 cut(s) | 146, 1635 |
| Mph1103I | ATGCAT | 1 cut(s) | 1951 |
| MroNI | GCCGGC | 1 cut(s) | 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 929 |
| MseI | TTAA | 8 cut(s) | 336, 546, 654, 857, 888, 1215, 2052, 2304 |
| MspI | CCGG | 3 cut(s) | 554, 2379, 2460 |
| MspR9I | CCNGG | 4 cut(s) | 159, 2379, 2460, 2461 |
| Mva1269I | GAATGC | 1 cut(s) | 960 |
| MvaI | CCWGG | 1 cut(s) | 159 |
| MvnI | CGCG | 1 cut(s) | 1147 |
| NaeI | GCCGGC | 1 cut(s) | 555 |
| NciI | CCSGG | 3 cut(s) | 2379, 2460, 2461 |
| NcoI | CCATGG | 1 cut(s) | 1303 |
| NdeI | CATATG | 1 cut(s) | 1405 |
| NgoMIV | GCCGGC | 1 cut(s) | 553 |
| NlaIII | CATG | 7 cut(s) | 134, 323, 869, 1307, 1472, 1899, 1966 |
| NmeAIII | GCCGAG | 1 cut(s) | 1909 |
| NmuCI | GTSAC | 2 cut(s) | 466, 1337 |
| NsiI | ATGCAT | 1 cut(s) | 1951 |
| NspI | RCATGY | 2 cut(s) | 1899, 1966 |
| PaeR7I | CTCGAG | 2 cut(s) | 72, 486 |
| PceI | AGGCCT | 1 cut(s) | 2431 |
| PciI | ACATGT | 1 cut(s) | 1962 |
| PciSI | GCTCTTC | 1 cut(s) | 1062 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 64, 204, 2128 |
| PctI | GAATGC | 1 cut(s) | 960 |
| PdiI | GCCGGC | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 1 cut(s) | 929 |
| PfeI | GAWTC | 8 cut(s) | 63, 232, 419, 1114, 1346, 1523, 1838, 1850 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 368, 1617 |
| PkrI | GCNGC | 8 cut(s) | 154, 203, 318, 552, 772, 2013, 2137, 2248 |
| PleI | GAGTC | 5 cut(s) | 667, 751, 970, 1319, 1838 |
| PpsI | GAGTC | 5 cut(s) | 667, 751, 970, 1319, 1838 |
| PscI | ACATGT | 1 cut(s) | 1962 |
| Psp6I | CCWGG | 1 cut(s) | 157 |
| PspFI | CCCAGC | 1 cut(s) | 2435 |
| PspGI | CCWGG | 1 cut(s) | 157 |
| PspPI | GGNCC | 3 cut(s) | 1160, 1465, 1588 |
| PstI | CTGCAG | 1 cut(s) | 577 |
| PstNI | CAGNNNCTG | 2 cut(s) | 572, 1841 |
| PsuI | RGATCY | 1 cut(s) | 1237 |
| RsaI | GTAC | 4 cut(s) | 38, 110, 1176, 1569 |
| RsaNI | GTAC | 4 cut(s) | 37, 109, 1175, 1568 |
| SalI | GTCGAC | 1 cut(s) | 1193 |
| SapI | GCTCTTC | 1 cut(s) | 1062 |
| SaqAI | TTAA | 8 cut(s) | 336, 546, 654, 857, 888, 1215, 2052, 2304 |
| SatI | GCNGC | 8 cut(s) | 153, 202, 317, 551, 771, 2012, 2136, 2247 |
| Sau96I | GGNCC | 3 cut(s) | 1160, 1465, 1588 |
| ScaI | AGTACT | 2 cut(s) | 38, 110 |
| SchI | GAGTC | 5 cut(s) | 668, 752, 970, 1319, 1838 |
| ScrFI | CCNGG | 4 cut(s) | 159, 2379, 2460, 2461 |
| SduI | GDGCHC | 3 cut(s) | 385, 507, 2402 |
| SfaNI | GCATC | 6 cut(s) | 31, 159, 578, 773, 1926, 1936 |
| SfcI | CTRYAG | 1 cut(s) | 573 |
| Sfr274I | CTCGAG | 2 cut(s) | 72, 486 |
| SinI | GGWCC | 2 cut(s) | 1160, 1588 |
| SlaI | CTCGAG | 2 cut(s) | 72, 486 |
| SmaI | CCCGGG | 1 cut(s) | 2461 |
| SmlI | CTYRAG | 2 cut(s) | 72, 486 |
| SmoI | CTYRAG | 2 cut(s) | 72, 486 |
| Sse9I | AATT | 5 cut(s) | 337, 460, 891, 1061, 1202 |
| SseBI | AGGCCT | 1 cut(s) | 2431 |
| SsiI | CCGC | 6 cut(s) | 153, 551, 1090, 1147, 1411, 1453 |
| SspMI | CTAG | 2 cut(s) | 558, 1458 |
| StuI | AGGCCT | 1 cut(s) | 2431 |
| StyD4I | CCNGG | 4 cut(s) | 157, 2377, 2458, 2459 |
| StyI | CCWWGG | 5 cut(s) | 471, 1303, 1878, 2115, 2264 |
| TaaI | ACNGT | 8 cut(s) | 512, 722, 1084, 1289, 1337, 1679, 2070, 2207 |
| TaiI | ACGT | 4 cut(s) | 61, 807, 1363, 2365 |
| TaqI | TCGA | 9 cut(s) | 73, 99, 141, 183, 219, 293, 487, 1194, 1515 |
| TasI | AATT | 5 cut(s) | 337, 460, 891, 1061, 1202 |
| TatI | WGTACW | 3 cut(s) | 36, 108, 1174 |
| TauI | GCSGC | 2 cut(s) | 155, 553 |
| TfiI | GAWTC | 8 cut(s) | 63, 232, 419, 1114, 1346, 1523, 1838, 1850 |
| Tru1I | TTAA | 8 cut(s) | 336, 546, 654, 857, 888, 1215, 2052, 2304 |
| Tru9I | TTAA | 8 cut(s) | 336, 546, 654, 857, 888, 1215, 2052, 2304 |
| TscAI | CASTG | 7 cut(s) | 442, 1294, 1342, 1378, 1622, 1684, 2407 |
| TseFI | GTSAC | 2 cut(s) | 466, 1337 |
| TseI | GCWGC | 6 cut(s) | 201, 316, 770, 2011, 2135, 2246 |
| Tsp45I | GTSAC | 2 cut(s) | 466, 1337 |
| TspGWI | ACGGA | 2 cut(s) | 56, 2137 |
| TspMI | CCCGGG | 1 cut(s) | 2459 |
| TspRI | CASTG | 7 cut(s) | 442, 1294, 1342, 1378, 1622, 1684, 2407 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 368, 1617 |
| VpaK11BI | GGWCC | 2 cut(s) | 1160, 1588 |
| XapI | RAATTY | 2 cut(s) | 460, 891 |
| XceI | RCATGY | 2 cut(s) | 1899, 1966 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 679 |
| XhoI | CTCGAG | 2 cut(s) | 72, 486 |
| XmaI | CCCGGG | 1 cut(s) | 2459 |
| XmiI | GTMKAC | 1 cut(s) | 1194 |
| XmnI | GAANNNNTTC | 1 cut(s) | 929 |
| XspI | CTAG | 2 cut(s) | 558, 1458 |
| ZrmI | AGTACT | 2 cut(s) | 38, 110 |
| Zsp2I | ATGCAT | 1 cut(s) | 1951 |