Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013282

Physical Location & Seq

Genomic Coordinates Forward (+)

49527354 .. 49527814

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAAGCGCAGTTCAAAGAAATTGATGCCCGGCCAGCAAAGAAGGTGGCAGAGGCTAAAGCTCGAAAGAAGCGGGTTGCCATGAGGAAGCTTGAGAAGATTCGTAAGAAGGCTAACACAATATCAGATCAGGCAGATATCTCTGATCGTTCAAAGAGCAAGCAAATCGACCAATTGTATAAGAAGGCAGTACCCAAGAGGCCTAAAAAGGAGTATGTGGTTGCGAAGAAAGGTGTTCAAGTCAAGGTTGGCAAGGGCAAAGGCAGTGAAAAGAAAGGAAAAAATATGAAGGACAAGAGAGGTAAAGGTAAAGGATCTGGGAAGCCTTCAGGAGGGAAGCCTTCGGGAAAGAAGGGTGGTAGCAAAGGAAGAAAGATGGGCATGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

131

Amino Acids

14.27

Weight (kDa)

10.69

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spb1_C	PF07780	1 - 102	1.4e-25	Spb1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25730
fragaria_vesca	FvH4_2g09160
malus_domestica	MD05G1064300.v1.1 MD10G1073000.v1.1
prunus_persica	Prupe.8G094400_v2.0.a1
pyrus_communis	pycom05g05540 pycom10g05760
rosa_chinensis	RchiOBHm_Chr6g0265021
rosa_laevigata	RLG00000014215 RLG00000014220
rosa_multiflora	Rmu_sc0002934.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432100
rosa_rugosa	Rorug06G0013800
rosa_samantha	Rh6AG136200 Rh6BG133000 Rh6CG131600 Rh6DG118800
rosa_wichuraiana	Rw6G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	16, 153, 239
AluBI	AGCT	2 cut(s)	62, 91
AluI	AGCT	2 cut(s)	62, 91
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	32, 200
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	31
BccI	CCATC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcnI	CCSGG	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	34, 202
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	332
BsnI	GGCC	2 cut(s)	34, 202
Bsp143I	GATC	3 cut(s)	127, 145, 314
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	34, 202
BspPI	GGATC	1 cut(s)	322
BssMI	GATC	3 cut(s)	127, 145, 314
BstC8I	GCNNGC	3 cut(s)	36, 161, 383
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	130, 148, 317
BstMBI	GATC	3 cut(s)	127, 145, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	34, 202
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	36, 161, 383
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	3 cut(s)	82, 382, 386
CviJI	RGCY	8 cut(s)	34, 56, 62, 91, 113, 202, 325, 340
CviKI_1	RGCY	8 cut(s)	34, 56, 62, 91, 113, 202, 325, 340
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	3 cut(s)	129, 147, 316
DpnII	GATC	3 cut(s)	127, 145, 314
EaeI	YGGCCR	1 cut(s)	32
Eco147I	AGGCCT	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	387
FaeI	CATG	3 cut(s)	85, 385, 389
FaiI	YATR	6 cut(s)	83, 180, 216, 287, 383, 387
FatI	CATG	3 cut(s)	81, 381, 385
FauI	CCCGC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	34, 202
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	85, 385, 389
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	127, 145
Hpy188III	TCNNGA	2 cut(s)	330, 345
HpyAV	CCTTC	7 cut(s)	37, 103, 178, 283, 336, 346, 351
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	85, 385, 389
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	127, 145, 314
LpnPI	CCDG	5 cut(s)	44, 48, 116, 303, 315
LweI	GCATC	1 cut(s)	16
MalI	GATC	3 cut(s)	129, 147, 316
MboI	GATC	3 cut(s)	127, 145, 314
MboII	GAAGA	3 cut(s)	109, 238, 381
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	2 cut(s)	21, 173
MnlI	CCTC	5 cut(s)	46, 78, 192, 293, 326
Mph1103I	ATGCAT	1 cut(s)	387
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	127, 145, 314
NlaIII	CATG	3 cut(s)	85, 385, 389
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	385
PaeI	GCATGC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
Sau3AI	GATC	3 cut(s)	127, 145, 314
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	7 cut(s)	48, 64, 93, 235, 249, 304, 310
SfaNI	GCATC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	2 cut(s)	21, 173
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	73
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	2 cut(s)	64, 168
TasI	AATT	2 cut(s)	21, 173
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 302
TspRI	CASTG	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	330
XceI	RCATGY	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.