Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0013282

Physical Location & Seq

Genomic Coordinates Reverse (-)

377730 .. 383910

Gene Structure 6181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGGGCAAGGTGAAGGGAAAGCATCGTCTTGACAAGTACTACTACCTCGCGAAGGAGCACGGCTACCGCTCCCGTGCCTCATGGAAGCTTGTCCAGCTCGACGCCAAGCACTCCTTCCTCCACTCCGCCCACGCCGTCCTCGATCTCTGCGCCGCCCCCGGCGGTTGGATGCAAGTCGCCGTGCAGCGCGTCCCCGTCGGCAGCCTCGTCGTCGGCGTCGACTTGGTCCCCATCGCTCCGGTTCGCGGCGCGCACTCTATCCAGCAGGACATCACGAGGACCGAGTGCGTCGCCAGGCTGAGGAGGCTGATGAGGGACGAAGGCTGCTCTGCCTTCGATTTGGTGCTTCATGATGGCTCGCCCAACGTCGGTGGAGCCTGGTCGTCGGAAGCTACGGCGCAGAACTCCTTGGTTATTGATTCGGTGAAGCTGGCGACGCAGCTCTTGGCTCCCAAAGGCACATTTGTCACCAAGATCTTCAGGTCGCAAGATTATAATGCTGTCTTGTTTTGCCTTAAGGAGTTATTTGAGAAGGTTGAACAGTATAAACCAGCAGCTAGTCGTAGTGCATCTGCTGAGACATATCTTTTGGGTTTTAAGTACAAGGCTCCAGCAAAAATTGATCCTCGCCTACTTGATATGAAGCATCTGTTTAAAGCCGTGGAACCTCAGAAGAAGCATAACATTGATCAGTATGAAGATGGAGACACAATTTTGAGAAAAGTATCTTCAGCCGCTGACTTCATTTGGTCTGTGGATCCTCTAAATATTCTTGGATCTGTCACTTCCATAACATTTGATGATGTGACATCTTTGCCCATCAAGGATCATGCTTTGACAACAGAGGAGGTTAAAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCAAGATTTCAAGCATCTTTTGAATAGCATCATTGTTGCTCTTGTTGATATTATAGTTCTTGAAGGCAACCTGTTATTTTTAGAGTGGCTATCTTATTCAACTAGGGTCATGTGGCGGGTGCAGATAAGAAAGGCCTTGTCTCCTTCCGAGAAAGCTGATGTTACTACTGCTCCGGATGTTGAAAAGGAGACTAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGCTTACAAACGCTATGGAGCGCAAGAAGAAACGGGAAAAGAAGCTTCAAGCAAAGAAACGTGCTCAGGACAAGGTCCGGAAGGCGACTGGGATGCAAATAGATGCAATGCAAGATGGTTATACAGATGATGGTCTGTTTTCCCTATCTGCCATCAAGGGTAAGAAAGATCTGGTAGCGATTGATTCCACCGAATATGATGGTGAGAATGGTGACTTGGCAGATAGCGAAAATGAGGATATGCAGGATAAACCTGAGGAAGCATCTTCCAGTGATGTTGACTCTGATGATGGCCGTAGAAGATATGATGAAAAAATGGAAGAACTTCTAGATCAGGCTTATGAACATTATGTGGCCAAAAAGGAGGGAACTGCAAAGCAACGAAAGCGTTTGAAAGAAGAGGCTCAAAGTTTGGAGGATGTTGATGGTGAAGATACAATTCCATCTGATTATGATTCAGACAAAGATGAGGCTGATCAGGAAAAGAATCCTCTCTTAGATGCTCTTGATGATGGGGAAGGACCAACTCAGGAGGAGGTTACAAATAACTGGTTTAGTCAGCCGATCTTTGCTGAAGCTGTAGAACAGGGGGATTTGGAGAAGTCTGATAGTGAAGACGAAATGCAGGTTGAAAGGCCAGAAGAGAATTTGGCCCTGCAAGAGAAGCCCAAGGAAAAGACGGTTATTAAAAATGTTAAAGAAAAGTATGAAAATCGTGTTGCAGGGTCCAATTCCAATCATGAACTCAAAGCAAAGAAGGCAGATGATGATTTTGAGATAGTCCCTGCTCCCGATACAGATTCAAGTGATGATTCATCATCAGATGAATCGGAGGATATGGATACCTATAGAAAAGCTGAGATACTGGCATGTGCCAAAAAATGTTGTCAAAGAAGCAAAGGGAACAGATGCTTGATGATGCGTATAATAACGCAGTTTAAAGAAATTGATGCCCGGCCAGCAAAGAAGGTGGCAGAGGCTAAAGCTCGAAAGAAGCGGGTTGCCATGAGGAAGCTTGAGAAGATTCGTAAGAAGGCTAACACAATATCAGATCAGGCAGATATCTCTGATCGTTCAAAGAGCAAGCAAATCGACCAATTGTATAAGAAGGCAGTGCCCAAGAGGCCTAAAAAGGAGTATGTGGTTGCGAAGAAAGGTGTTCAAGTCAAGGTTGGCAAGGGTAAGGTCCGTGTTGATGCAAGAATGAAAAAGGATGCAAGGGGTCGTGGGACAGGTAATAAATGGGCAGGAAAAGGCAGTGAAAAGAAAGGAAAAAAATATGAAGGACAAGAGAGTCTTGCTGAGAATGTATTGTGTGCAAAGGAATGTGCTAGAATAGGGGTTTGCATATTTCGACTACTCATTCGCACGCTTCAGATGGCAAATATTGAGAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

839

Amino Acids

94.46

Weight (kDa)

6.25

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsJ	PF01728	22 - 201	1.1e-46	FtsJ-like methyltransferase
DUF3381	PF11861	224 - 304	2.6e-25	Ribosomal RNA methyltransferase Spb1, DUF3381
Spb1_C	PF07780	680 - 783	9.2e-27	Spb1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25730
fragaria_vesca	FvH4_2g09160
malus_domestica	MD05G1064300.v1.1 MD10G1073000.v1.1
prunus_persica	Prupe.8G094400_v2.0.a1
pyrus_communis	pycom05g05540 pycom10g05760
rosa_chinensis	RchiOBHm_Chr6g0265021
rosa_laevigata	RLG00000014215 RLG00000014220
rosa_multiflora	Rmu_sc0002934.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432100
rosa_rugosa	Rorug06G0013800
rosa_samantha	Rh6AG136200 Rh6BG133000 Rh6CG131600 Rh6DG118800
rosa_wichuraiana	Rw6G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AasI	GACNNNNNNGTC	1 cut(s)	2412
Acc36I	ACCTGC	1 cut(s)	1735
AccBSI	CCGCTC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	4 cut(s)	50, 189, 246, 251
AccIII	TCCGGA	2 cut(s)	1060, 1197
AciI	CCGC	8 cut(s)	67, 126, 153, 162, 246, 735, 1003, 2116
AclWI	GGATC	5 cut(s)	617, 752, 765, 784, 834
AcoI	YGGCCR	3 cut(s)	1411, 1473, 2075
AcsI	RAATTY	2 cut(s)	855, 1765
AcuI	CTGAAG	4 cut(s)	463, 714, 1713, 2477
AcyI	GRCGYC	2 cut(s)	102, 216
AfaI	GTAC	2 cut(s)	38, 602
AfiI	CCNNNNNNNGG	5 cut(s)	52, 165, 245, 300, 368
AflII	CTTAAG	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	293, 377
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 1319, 1351
Alw21I	GWGCWC	2 cut(s)	60, 1186
Alw26I	GTCTC	4 cut(s)	572, 699, 1032, 1070
AlwI	GGATC	5 cut(s)	617, 752, 765, 784, 834
AlwNI	CAGNNNCTG	1 cut(s)	737
Aor13HI	TCCGGA	2 cut(s)	1060, 1197
AoxI	GGCC	7 cut(s)	1020, 1411, 1473, 1754, 1770, 2075, 2243
ApeKI	GCWGC	5 cut(s)	184, 201, 324, 439, 554
ApoI	RAATTY	2 cut(s)	855, 1765
ArsI	GACNNNNNNTTYG	4 cut(s)	571, 603, 2466, 2498
Asp700I	GAANNNNTTC	1 cut(s)	1443
AspLEI	GCGC	6 cut(s)	152, 189, 251, 253, 400, 1143
AspS9I	GGNCC	7 cut(s)	226, 279, 1195, 1640, 1771, 1845, 2305
AsuC2I	CCSGG	2 cut(s)	159, 2074
AsuHPI	GGTGA	6 cut(s)	22, 436, 460, 1334, 1343, 1559
AvaII	GGWCC	6 cut(s)	226, 279, 1195, 1640, 1845, 2305
AxyI	CCTNAGG	1 cut(s)	1374
BaeGI	GKGCMC	1 cut(s)	2238
BalI	TGGCCA	1 cut(s)	1475
BamHI	GGATCC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	1740
Bbv12I	GWGCWC	2 cut(s)	60, 1186
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	196, 213, 311, 451, 566
BceAI	ACGGC	6 cut(s)	76, 119, 164, 411, 644, 1398
BcgI	CGANNNNNNTGC	6 cut(s)	190, 224, 1195, 1229, 2191, 2225
BciT130I	CCWGG	2 cut(s)	295, 379
BciVI	GTATCC	1 cut(s)	1954
BclI	TGATCA	2 cut(s)	688, 1594
BcnI	CCSGG	2 cut(s)	159, 2074
BcoDI	GTCTC	4 cut(s)	572, 699, 1032, 1070
BfaI	CTAG	4 cut(s)	558, 990, 1448, 2451
BfmI	CTRYAG	2 cut(s)	1698, 1966
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	1735
BfuI	GTATCC	1 cut(s)	1954
BglI	GCCNNNNNGGC	1 cut(s)	2242
BglII	AGATCT	2 cut(s)	474, 1288
BisI	GCNGC	8 cut(s)	153, 185, 202, 247, 325, 440, 555, 735
BlsI	GCNGC	8 cut(s)	154, 186, 203, 248, 326, 441, 556, 736
BmcAI	AGTACT	1 cut(s)	38
Bme1390I	CCNGG	4 cut(s)	159, 295, 379, 2074
Bme18I	GGWCC	6 cut(s)	226, 279, 1195, 1640, 1845, 2305
BmgT120I	GGNCC	7 cut(s)	226, 279, 1195, 1640, 1771, 1845, 2305
BmiI	GGNNCC	7 cut(s)	228, 376, 450, 609, 666, 759, 1846
BmrFI	CCNGG	4 cut(s)	159, 295, 379, 2074
BmrI	ACTGGG	1 cut(s)	1218
BmuI	ACTGGG	1 cut(s)	1218
BpiI	GAAGAC	1 cut(s)	1740
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	2 cut(s)	299, 1185
BpuEI	CTTGAG	1 cut(s)	2156
BpuMI	CCSGG	2 cut(s)	159, 2074
BsaHI	GRCGYC	2 cut(s)	102, 216
BsaJI	CCNNGG	4 cut(s)	157, 408, 660, 1788
BsaWI	WCCGGW	3 cut(s)	238, 1060, 1197
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 165, 245, 300, 368
Bse1I	ACTGG	4 cut(s)	1213, 1389, 1673, 1989
Bse21I	CCTNAGG	1 cut(s)	1374
Bse3DI	GCAATG	1 cut(s)	1233
BseAI	TCCGGA	2 cut(s)	1060, 1197
BseBI	CCWGG	2 cut(s)	295, 379
BseDI	CCNNGG	4 cut(s)	157, 408, 660, 1788
BseGI	GGATG	6 cut(s)	174, 1069, 1093, 1218, 1543, 2338
BseLI	CCNNNNNNNGG	5 cut(s)	52, 165, 245, 300, 368
BseMI	GCAATG	1 cut(s)	1233
BseMII	CTCAG	8 cut(s)	290, 567, 683, 1199, 1365, 1661, 1968, 2412
BseNI	ACTGG	4 cut(s)	1213, 1389, 1673, 1989
BsePI	GCGCGC	1 cut(s)	249
BseRI	GAGGAG	3 cut(s)	316, 860, 1667
BseSI	GKGCMC	1 cut(s)	2238
BseXI	GCAGC	5 cut(s)	196, 213, 311, 451, 566
BsgI	GTGCAG	2 cut(s)	203, 1028
Bsh1236I	CGCG	4 cut(s)	50, 189, 246, 251
BshFI	GGCC	7 cut(s)	1022, 1413, 1475, 1756, 1772, 2077, 2245
BsiHKAI	GWGCWC	2 cut(s)	60, 1186
BsiSI	CCGG	5 cut(s)	159, 239, 1061, 1198, 2074
BslFI	GGGAC	5 cut(s)	176, 212, 329, 1886, 2362
BslI	CCNNNNNNNGG	5 cut(s)	52, 165, 245, 300, 368
BsmAI	GTCTC	4 cut(s)	572, 699, 1032, 1070
BsmFI	GGGAC	5 cut(s)	176, 212, 329, 1886, 2362
BsnI	GGCC	7 cut(s)	1022, 1413, 1475, 1756, 1772, 2077, 2245
Bsp1286I	GDGCHC	3 cut(s)	60, 1186, 2238
Bsp13I	TCCGGA	2 cut(s)	1060, 1197
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	8 cut(s)	67, 126, 153, 162, 246, 735, 1003, 2116
BspANI	GGCC	7 cut(s)	1022, 1413, 1475, 1756, 1772, 2077, 2245
BspCNI	CTCAG	8 cut(s)	291, 568, 682, 1198, 1366, 1660, 1969, 2413
BspEI	TCCGGA	2 cut(s)	1060, 1197
BspFNI	CGCG	4 cut(s)	50, 189, 246, 251
BspHI	TCATGA	2 cut(s)	349, 1858
BspLI	GGNNCC	7 cut(s)	228, 376, 450, 609, 666, 759, 1846
BspMI	ACCTGC	1 cut(s)	1735
BspPI	GGATC	5 cut(s)	617, 752, 765, 784, 834
BspQI	GCTCTTC	1 cut(s)	1113
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	1233
BsrI	ACTGG	4 cut(s)	1213, 1389, 1673, 1989
BssECI	CCNNGG	4 cut(s)	157, 408, 660, 1788
BssHII	GCGCGC	1 cut(s)	249
BssNI	GRCGYC	2 cut(s)	102, 216
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	408, 1788
Bst2BI	CACGAG	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	295, 379
Bst4CI	ACNGT	2 cut(s)	543, 1801
Bst6I	CTCTTC	3 cut(s)	1113, 1512, 1755
BstACI	GRCGYC	2 cut(s)	102, 216
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	6 cut(s)	251, 359, 432, 2079, 2204, 2489
BstDSI	CCRYGG	1 cut(s)	660
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	6 cut(s)	174, 1069, 1093, 1218, 1543, 2338
BstFNI	CGCG	4 cut(s)	50, 189, 246, 251
BstHHI	GCGC	6 cut(s)	152, 189, 251, 253, 400, 1143
BstMAI	GTCTC	4 cut(s)	572, 699, 1032, 1070
BstMWI	GCNNNNNNNGC	8 cut(s)	94, 304, 436, 1504, 1783, 1877, 2078, 2242
BstNI	CCWGG	2 cut(s)	295, 379
BstNSI	RCATGY	1 cut(s)	1992
BstSCI	CCNGG	4 cut(s)	157, 293, 377, 2072
BstSFI	CTRYAG	2 cut(s)	1698, 1966
BstSLI	GKGCMC	1 cut(s)	2238
BstUI	CGCG	4 cut(s)	50, 189, 246, 251
BstV1I	GCAGC	5 cut(s)	196, 213, 311, 451, 566
BstV2I	GAAGAC	1 cut(s)	1740
BstX2I	RGATCY	4 cut(s)	474, 757, 776, 1288
BstYI	RGATCY	4 cut(s)	474, 757, 776, 1288
Bsu36I	CCTNAGG	1 cut(s)	1374
BsuI	GTATCC	1 cut(s)	1954
BsuRI	GGCC	7 cut(s)	1022, 1413, 1475, 1756, 1772, 2077, 2245
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	6 cut(s)	174, 1069, 1093, 1218, 1543, 2338
BtsI	GCAGTG	2 cut(s)	2238, 2383
BtsIMutI	CAGTG	3 cut(s)	1396, 2238, 2383
BtuMI	TCGCGA	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	1735
Cac8I	GCNNGC	6 cut(s)	251, 359, 432, 2079, 2204, 2489
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	2 cut(s)	349, 1858
CfoI	GCGC	6 cut(s)	152, 189, 251, 253, 400, 1143
Cfr13I	GGNCC	7 cut(s)	226, 279, 1195, 1640, 1771, 1845, 2305
CseI	GACGC	5 cut(s)	110, 178, 205, 277, 445
Csp6I	GTAC	2 cut(s)	37, 601
CspCI	CAANNNNNGTGG	4 cut(s)	352, 387, 2070, 2105
CviAII	CATG	7 cut(s)	81, 350, 830, 997, 1859, 1989, 2125
CviQI	GTAC	2 cut(s)	37, 601
DraI	TTTAAA	2 cut(s)	655, 2059
DrdI	GACNNNNNNGTC	1 cut(s)	2412
DseDI	GACNNNNNNGTC	1 cut(s)	2412
EaeI	YGGCCR	3 cut(s)	1411, 1473, 2075
Eam1104I	CTCTTC	3 cut(s)	1113, 1512, 1755
EarI	CTCTTC	3 cut(s)	1113, 1512, 1755
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	408, 1788
Eco147I	AGGCCT	2 cut(s)	1022, 2245
Eco32I	GATATC	1 cut(s)	2182
Eco47I	GGWCC	6 cut(s)	226, 279, 1195, 1640, 1845, 2305
Eco57I	CTGAAG	4 cut(s)	463, 714, 1713, 2477
Eco81I	CCTNAGG	1 cut(s)	1374
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	293, 377
EcoRV	GATATC	1 cut(s)	2182
EcoT14I	CCWWGG	2 cut(s)	408, 1788
ErhI	CCWWGG	2 cut(s)	408, 1788
FaeI	CATG	7 cut(s)	84, 353, 833, 1000, 1862, 1992, 2128
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 2400, 2432
FaqI	GGGAC	5 cut(s)	176, 212, 329, 1886, 2362
FatI	CATG	7 cut(s)	80, 349, 829, 996, 1858, 1988, 2124
FauI	CCCGC	2 cut(s)	996, 2109
FbaI	TGATCA	2 cut(s)	688, 1594
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	153, 185, 202, 247, 325, 440, 555, 735
FokI	GGATG	6 cut(s)	181, 1076, 1100, 1225, 1550, 2345
Fsp4HI	GCNGC	8 cut(s)	153, 185, 202, 247, 325, 440, 555, 735
FspBI	CTAG	4 cut(s)	558, 990, 1448, 2451
GlaI	GCGC	6 cut(s)	151, 188, 250, 252, 399, 1142
GluI	GCNGC	8 cut(s)	153, 185, 202, 247, 325, 440, 555, 735
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	7 cut(s)	1022, 1413, 1475, 1756, 1772, 2077, 2245
HapII	CCGG	5 cut(s)	159, 239, 1061, 1198, 2074
HgaI	GACGC	5 cut(s)	110, 178, 205, 277, 445
HhaI	GCGC	6 cut(s)	152, 189, 251, 253, 400, 1143
Hin1I	GRCGYC	2 cut(s)	102, 216
Hin1II	CATG	7 cut(s)	84, 353, 833, 1000, 1862, 1992, 2128
Hin6I	GCGC	6 cut(s)	150, 187, 249, 251, 398, 1141
HinP1I	GCGC	6 cut(s)	150, 187, 249, 251, 398, 1141
HincII	GTYRAC	2 cut(s)	220, 1399
HindII	GTYRAC	2 cut(s)	220, 1399
HindIII	AAGCTT	3 cut(s)	86, 1163, 2132
HpaII	CCGG	5 cut(s)	159, 239, 1061, 1198, 2074
HphI	GGTGA	6 cut(s)	22, 436, 460, 1334, 1343, 1559
Hpy166II	GTNNAC	2 cut(s)	220, 1399
Hpy8I	GTNNAC	2 cut(s)	220, 1399
Hpy99I	CGWCG	9 cut(s)	104, 200, 212, 215, 221, 293, 371, 388, 439
HpyCH4III	ACNGT	2 cut(s)	543, 1801
HpyCH4IV	ACGT	2 cut(s)	366, 1180
HpyF10VI	GCNNNNNNNGC	8 cut(s)	94, 304, 436, 1504, 1783, 1877, 2078, 2242
HpySE526I	ACGT	2 cut(s)	366, 1180
Hsp92I	GRCGYC	2 cut(s)	102, 216
Hsp92II	CATG	7 cut(s)	84, 353, 833, 1000, 1862, 1992, 2128
HspAI	GCGC	6 cut(s)	150, 187, 249, 251, 398, 1141
Kpn2I	TCCGGA	2 cut(s)	1060, 1197
Ksp22I	TGATCA	2 cut(s)	688, 1594
LguI	GCTCTTC	1 cut(s)	1113
LmnI	GCTCC	9 cut(s)	55, 74, 241, 374, 454, 613, 1063, 1138, 1912
Lsp1109I	GCAGC	5 cut(s)	196, 213, 311, 451, 566
MaeI	CTAG	4 cut(s)	558, 990, 1448, 2451
MaeII	ACGT	2 cut(s)	366, 1180
MaeIII	GTNAC	6 cut(s)	466, 781, 805, 1048, 1331, 1657
MbiI	CCGCTC	1 cut(s)	69
MfeI	CAATTG	1 cut(s)	2216
MflI	RGATCY	4 cut(s)	474, 757, 776, 1288
MhlI	GDGCHC	3 cut(s)	60, 1186, 2238
MlsI	TGGCCA	1 cut(s)	1475
MluCI	AATT	8 cut(s)	618, 711, 855, 1557, 1765, 1849, 2064, 2216
MluNI	TGGCCA	1 cut(s)	1475
MlyI	GAGTC	2 cut(s)	1394, 2422
MmeI	TCCRAC	2 cut(s)	146, 366
Mox20I	TGGCCA	1 cut(s)	1475
MroI	TCCGGA	2 cut(s)	1060, 1197
MroXI	GAANNNNTTC	1 cut(s)	1443
MscI	TGGCCA	1 cut(s)	1475
MseI	TTAA	7 cut(s)	516, 597, 654, 852, 1806, 1815, 2058
Msp20I	TGGCCA	1 cut(s)	1475
MspA1I	CMGCKG	1 cut(s)	737
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	5 cut(s)	159, 239, 1061, 1198, 2074
MspR9I	CCNGG	4 cut(s)	159, 295, 379, 2074
MunI	CAATTG	1 cut(s)	2216
MvaI	CCWGG	2 cut(s)	295, 379
MvnI	CGCG	4 cut(s)	50, 189, 246, 251
MwoI	GCNNNNNNNGC	8 cut(s)	94, 304, 436, 1504, 1783, 1877, 2078, 2242
NciI	CCSGG	2 cut(s)	159, 2074
NlaIII	CATG	7 cut(s)	84, 353, 833, 1000, 1862, 1992, 2128
NlaIV	GGNNCC	7 cut(s)	228, 376, 450, 609, 666, 759, 1846
NmuCI	GTSAC	4 cut(s)	466, 781, 805, 1331
NruI	TCGCGA	1 cut(s)	50
NspI	RCATGY	1 cut(s)	1992
PagI	TCATGA	2 cut(s)	349, 1858
PauI	GCGCGC	1 cut(s)	249
PceI	AGGCCT	2 cut(s)	1022, 2245
PciSI	GCTCTTC	1 cut(s)	1113
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 204, 213, 216
PdmI	GAANNNNTTC	1 cut(s)	1443
PfeI	GAWTC	8 cut(s)	419, 1304, 1574, 1606, 1919, 1931, 1946, 2143
PflFI	GACNNNGTC	2 cut(s)	224, 1193
PkrI	GCNGC	8 cut(s)	154, 186, 203, 248, 326, 441, 556, 736
PleI	GAGTC	2 cut(s)	1394, 2421
PpsI	GAGTC	2 cut(s)	1394, 2421
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	293, 377
PspGI	CCWGG	2 cut(s)	293, 377
PspN4I	GGNNCC	7 cut(s)	228, 376, 450, 609, 666, 759, 1846
PspPI	GGNCC	7 cut(s)	226, 279, 1195, 1640, 1771, 1845, 2305
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	4 cut(s)	474, 757, 776, 1288
PsyI	GACNNNGTC	2 cut(s)	224, 1193
PteI	GCGCGC	1 cut(s)	249
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	2 cut(s)	38, 602
RsaNI	GTAC	2 cut(s)	37, 601
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	1113
SaqAI	TTAA	7 cut(s)	516, 597, 654, 852, 1806, 1815, 2058
SatI	GCNGC	8 cut(s)	153, 185, 202, 247, 325, 440, 555, 735
Sau96I	GGNCC	7 cut(s)	226, 279, 1195, 1640, 1771, 1845, 2305
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	2 cut(s)	1394, 2422
ScrFI	CCNGG	4 cut(s)	159, 295, 379, 2074
SduI	GDGCHC	3 cut(s)	60, 1186, 2238
SfcI	CTRYAG	2 cut(s)	1698, 1966
SinI	GGWCC	6 cut(s)	226, 279, 1195, 1640, 1845, 2305
SmlI	CTYRAG	2 cut(s)	515, 2135
SmoI	CTYRAG	2 cut(s)	515, 2135
Sse9I	AATT	8 cut(s)	618, 711, 855, 1557, 1765, 1849, 2064, 2216
SseBI	AGGCCT	2 cut(s)	1022, 2245
SsiI	CCGC	8 cut(s)	67, 126, 153, 162, 246, 735, 1003, 2116
SspI	AATATT	2 cut(s)	769, 2506
SspMI	CTAG	4 cut(s)	558, 990, 1448, 2451
StuI	AGGCCT	2 cut(s)	1022, 2245
StyD4I	CCNGG	4 cut(s)	157, 293, 377, 2072
StyI	CCWWGG	2 cut(s)	408, 1788
TaaI	ACNGT	2 cut(s)	543, 1801
TaiI	ACGT	2 cut(s)	369, 1183
TaqI	TCGA	7 cut(s)	99, 141, 219, 336, 2107, 2211, 2473
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	8 cut(s)	618, 711, 855, 1557, 1765, 1849, 2064, 2216
TatI	WGTACW	2 cut(s)	36, 600
TauI	GCSGC	3 cut(s)	155, 249, 737
TfiI	GAWTC	8 cut(s)	419, 1304, 1574, 1606, 1919, 1931, 1946, 2143
Tru1I	TTAA	7 cut(s)	516, 597, 654, 852, 1806, 1815, 2058
Tru9I	TTAA	7 cut(s)	516, 597, 654, 852, 1806, 1815, 2058
TscAI	CASTG	3 cut(s)	1396, 2238, 2383
TseFI	GTSAC	4 cut(s)	466, 781, 805, 1331
TseI	GCWGC	5 cut(s)	184, 201, 324, 439, 554
Tsp45I	GTSAC	4 cut(s)	466, 781, 805, 1331
TspGWI	ACGGA	1 cut(s)	2297
TspRI	CASTG	3 cut(s)	1396, 2238, 2383
Tth111I	GACNNNGTC	2 cut(s)	224, 1193
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	6 cut(s)	226, 279, 1195, 1640, 1845, 2305
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	2 cut(s)	855, 1765
XbaI	TCTAGA	1 cut(s)	1447
XceI	RCATGY	1 cut(s)	1992
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	1443
XspI	CTAG	4 cut(s)	558, 990, 1448, 2451
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.