Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013282

Physical Location & Seq

Genomic Coordinates Forward (+)

49475122 .. 49481481

Gene Structure 6360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGGGCAAGGTGAAGGGAAAGCATCGTCTTGACAAGTACTACTACCTCGCGAAGGAGCACGGCTACCGCTCCCGTGCCTCATGGAAGCTTCTCCAGCTCGACGCCAAGCACTCCTTCCTCCACTCCGCCCACGCCGTCCTCGATCTCTGCGCCGCCCCCGGCGGTTGGATGCAAGTCGCCGTGCAGCGCGTCCCCGTCGGCAGCCTCGTCGTCGGCGTCGACTTGGTCCCCATCGCTCCGGTTCGCGGCGCCCACTCTATCCAGCAGGACATCACGAGGACCGAGTGCGTCGCCAAGCTGAGGACGCTGATGAGGAACGAAGGCTGCTCTGCCTTCGATTTGGTGCTTCATGATGGCTCGCCCAACGTCGGTGGAGCCTGGTCGTCGGAAGCTACGGCGCAGAACGCCTTGGTTATTGATTCGGTGAAGCTGGCGACGCAGCTCTTGGCTCCCAAAGGCACATTTGTCACCAAGATCTTCAGGTCGCAAGATTATAATGCTGTCTTGTTTTGCCTTAAGGAGTTATTTGAGAAGGTTGAACAGTATAAACCAGCAGCTAGTCGTAGTGCATCTGCCGAGACATATCTTTTGGGTTTTAAGTACAAGGCTCCAGCAAAAATTGATCCTCGCCTACTTGATATGAAGCATCTGTTTAAAGCCGTGGAACCTCAGAAGAAGGTGGTGGATGTACTTAGAGGAACAAAGCAAAAAAGACACCGTGACGGGTATGAAGATGGAGACACAATTTTGAGAAAAGTATCTTCAGCCGCTGACTTCATTTGGTCTGTGGATCCTCTAAATATTCTTGGATCTGTCACTTCCATAACATTTGATGATGTGACATCTTTGCCCATCAAGGATCATGCTTTGACAACAGAGGAGGTTAAAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCAAGATTTCAAGCATCTTTTGAAGTGGCGGGTGCAGATAAGAAAGGCCTTGTCTCCTTCCGAGAAAGCTGATGTTACTACTGCTCCAGATGTTGAAAAGGAGGCTAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGCTTACAAACGCTATGGAGCGCAAGAAGAAACGGGAAAAGAAGCTTCAAGCAAAGAAACGTGCTCAGGACAAGGTCCGGAAGGCGACTGGGATGCAAATAGATGCAATGCAAGATGGTTATACAGATGATTCTCTGTTTTCCCTATCTGCCATCAAGGGTAAGAAAGATCTGGTAGCGATTGATTCCACCGAATATGATGGTGAGAATGGTGACTTGGCAGATAGCGAAAATGAGGATATGCAAGATAAACCCGAGGAAGCATCTTCCAGTGATGTAGACTCTGATGACGGCCGTAGAAGATATGATGAAAAAATGGAAGAACTTCTAGATCAGGCTTATGAACATTATGTGGCCAAAAAGGAGGGAACTGCAAAGCAGCGAAAGCGTTTGAAAGAAGAGGCTCAAAGTTTGGAGGATGTTGACGGTGAAGATACAATTCCATCTGATTATGATTCAGACAAAGATGAGGCTGATCAGGAGAAGAATCCTCTCTTAGATGCTCTTGATGATGGGGAAGGACCAACTCAGGAGGAGGTTACAAATAACTGGTTTAGTCAGCCGATCTTTGCTGAAGCTGTAGAACAGGGGGATTTGGAGAAGTCTGATAGTGAAGATGAAATGCAGGTTGAAAGGCCAGAAGAGAATTTGGCCCTGCAAGAGAAGCCCAAGGAAAAGACGGTTATTAAAAATGTTAAAGAAAAGTCTGAAAATCGTGTTGCAGGGTCCAATTCCAATCATGAACTCAAAGCTAAGAAGGCAGATGATGATTTTGAGATAGTCCCTGCTCCAGATACAGATTCAAGTGATGATTCATCATCAGATGAGTCGGAGGATATGGATACCTATAGAAAAGCCGAGATACTGGCATGTGCCAAAAAAATGTTGTCAAAGAAGCAAAGGGAACAGATGCTTGATGATGCGTATAATAAGTACATGCTTGATGATGAGGGCTTGCCCAAATGGTTTTTGGATGAGGAAAAGAAGCACCGACGACCAAATAAGCCAGTGACCAAAGAAGAGATTAATGCAATGAAAGCGCAGTTCAAAGAAATTGATGCCCGGCCAGCAAAGAAGGTGGCAGAGGCTAAAGCTCGAAAGAAGCGGGTTGCCATGAGGAAGCTTGAGAAGATTCGTAAGAAGGCTAACACAATATCAGATCAGGCAGATATCTCTGATCGTTCAAAGAGCAAGCAAATCGACCAATTGTATAAGAAGGCAGTACCCAAGAGGCCTAAAAAGGAGTATGTGGTTGCGAAGAAAGGTGTTCAAGTCAAGGTTGGCAAGGGTAAGGTCCGTGTTGATGCAAGAATGAAAAAGGATGCAAGGGGTCGTGGGACGGGTAATAAATGGGCTGGCAAAGGCAGTGAAAAGAAAGGAAAAAATATGAAGGACAAGAGAGGTAAAGGTAAAGGATCTGGGAAGCCTTCAGGAGGGAAGCCTTCGGGAAAGAAGGGTGGTAGCAAAGGAAGAAAGATAGGCATGCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

853

Amino Acids

95.64

Weight (kDa)

8.61

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsJ	PF01728	22 - 201	2.7e-47	FtsJ-like methyltransferase
DUF3381	PF11861	234 - 382	2.4e-45	Ribosomal RNA methyltransferase Spb1, DUF3381
Spb1_C	PF07780	607 - 801	2.1e-60	Spb1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25730
fragaria_vesca	FvH4_2g09160
malus_domestica	MD05G1064300.v1.1 MD10G1073000.v1.1
prunus_persica	Prupe.8G094400_v2.0.a1
pyrus_communis	pycom05g05540 pycom10g05760
rosa_chinensis	RchiOBHm_Chr6g0265021
rosa_laevigata	RLG00000014215 RLG00000014220
rosa_multiflora	Rmu_sc0002934.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432100
rosa_rugosa	Rorug06G0013800
rosa_samantha	Rh6AG136200 Rh6BG133000 Rh6CG131600 Rh6DG118800
rosa_wichuraiana	Rw6G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	1681
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	69
AccI	GTMKAC	2 cut(s)	219, 1344
AccII	CGCG	3 cut(s)	50, 189, 246
AccIII	TCCGGA	1 cut(s)	1143
AciI	CCGC	8 cut(s)	67, 126, 153, 162, 246, 768, 949, 2170
AclWI	GGATC	6 cut(s)	617, 785, 798, 817, 867, 2488
AcoI	YGGCCR	3 cut(s)	1357, 1419, 2129
AcsI	RAATTY	2 cut(s)	888, 1711
AcuI	CTGAAG	4 cut(s)	463, 747, 1659, 2478
AcyI	GRCGYC	3 cut(s)	102, 216, 249
AfaI	GTAC	5 cut(s)	38, 602, 690, 2000, 2289
AfiI	CCNNNNNNNGG	6 cut(s)	52, 165, 245, 300, 368, 2498
AflII	CTTAAG	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 1265, 1297
Alw21I	GWGCWC	2 cut(s)	60, 1132
Alw26I	GTCTC	3 cut(s)	572, 732, 978
AlwI	GGATC	6 cut(s)	617, 785, 798, 817, 867, 2488
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	1319
Aor13HI	TCCGGA	1 cut(s)	1143
AoxI	GGCC	7 cut(s)	966, 1357, 1419, 1700, 1716, 2129, 2297
ApeKI	GCWGC	6 cut(s)	184, 201, 324, 439, 554, 1444
ApoI	RAATTY	2 cut(s)	888, 1711
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
AseI	ATTAAT	1 cut(s)	2091
Asp700I	GAANNNNTTC	1 cut(s)	1389
AspLEI	GCGC	6 cut(s)	152, 189, 251, 400, 1089, 2107
AspS9I	GGNCC	7 cut(s)	226, 279, 1141, 1586, 1717, 1791, 2359
AsuC2I	CCSGG	2 cut(s)	159, 2128
AsuHPI	GGTGA	6 cut(s)	22, 436, 460, 1280, 1289, 1505
AvaI	CYCGRG	1 cut(s)	1319
AvaII	GGWCC	6 cut(s)	226, 279, 1141, 1586, 1791, 2359
BalI	TGGCCA	1 cut(s)	1421
BamHI	GGATCC	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	274
Bbv12I	GWGCWC	2 cut(s)	60, 1132
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	6 cut(s)	196, 213, 311, 451, 566, 1456
BccI	CCATC	9 cut(s)	239, 347, 728, 860, 1175, 1226, 1259, 1516, 1571
BceAI	ACGGC	7 cut(s)	76, 119, 164, 411, 644, 1344, 1372
BcgI	CGANNNNNNTGC	6 cut(s)	190, 224, 1141, 1175, 2245, 2279
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	1900
BclI	TGATCA	1 cut(s)	1540
BcnI	CCSGG	2 cut(s)	159, 2128
BcoDI	GTCTC	3 cut(s)	572, 732, 978
BfaI	CTAG	2 cut(s)	558, 1394
BfmI	CTRYAG	2 cut(s)	1644, 1912
BfoI	RGCGCY	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	1681
BfuI	GTATCC	1 cut(s)	1900
BglII	AGATCT	2 cut(s)	474, 1234
BisI	GCNGC	9 cut(s)	153, 185, 202, 247, 325, 440, 555, 768, 1445
BlsI	GCNGC	9 cut(s)	154, 186, 203, 248, 326, 441, 556, 769, 1446
BmcAI	AGTACT	1 cut(s)	38
Bme1390I	CCNGG	3 cut(s)	159, 379, 2128
Bme18I	GGWCC	6 cut(s)	226, 279, 1141, 1586, 1791, 2359
BmeT110I	CYCGRG	1 cut(s)	1319
BmgT120I	GGNCC	7 cut(s)	226, 279, 1141, 1586, 1717, 1791, 2359
BmiI	GGNNCC	8 cut(s)	228, 250, 376, 450, 609, 666, 792, 1792
BmrFI	CCNGG	3 cut(s)	159, 379, 2128
BmrI	ACTGGG	1 cut(s)	1164
BmuI	ACTGGG	1 cut(s)	1164
BpmI	CTGGAG	4 cut(s)	77, 594, 990, 1839
Bpu10I	CCTNAGC	3 cut(s)	299, 1026, 1131
BpuEI	CTTGAG	1 cut(s)	2210
BpuMI	CCSGG	2 cut(s)	159, 2128
BsaHI	GRCGYC	3 cut(s)	102, 216, 249
BsaJI	CCNNGG	5 cut(s)	157, 408, 660, 1320, 1734
BsaWI	WCCGGW	2 cut(s)	238, 1143
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 165, 245, 300, 368, 2498
Bse1I	ACTGG	5 cut(s)	1159, 1335, 1619, 1935, 2072
Bse3DI	GCAATG	2 cut(s)	1179, 2103
BseAI	TCCGGA	1 cut(s)	1143
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	5 cut(s)	157, 408, 660, 1320, 1734
BseGI	GGATG	7 cut(s)	174, 691, 1039, 1164, 1489, 2044, 2392
BseLI	CCNNNNNNNGG	6 cut(s)	52, 165, 245, 300, 368, 2498
BseMI	GCAATG	2 cut(s)	1179, 2103
BseMII	CTCAG	4 cut(s)	290, 683, 1145, 1607
BseNI	ACTGG	5 cut(s)	1159, 1335, 1619, 1935, 2072
BseRI	GAGGAG	2 cut(s)	893, 1613
BseX3I	CGGCCG	1 cut(s)	1357
BseXI	GCAGC	6 cut(s)	196, 213, 311, 451, 566, 1456
BsgI	GTGCAG	2 cut(s)	203, 974
Bsh1236I	CGCG	3 cut(s)	50, 189, 246
Bsh1285I	CGRYCG	1 cut(s)	1360
BshFI	GGCC	7 cut(s)	968, 1359, 1421, 1702, 1718, 2131, 2299
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	1360
BsiHKAI	GWGCWC	2 cut(s)	60, 1132
BsiHKCI	CYCGRG	1 cut(s)	1319
BsiSI	CCGG	4 cut(s)	159, 239, 1144, 2128
BslFI	GGGAC	4 cut(s)	176, 212, 1832, 2416
BslI	CCNNNNNNNGG	6 cut(s)	52, 165, 245, 300, 368, 2498
BsmAI	GTCTC	3 cut(s)	572, 732, 978
BsmFI	GGGAC	4 cut(s)	176, 212, 1832, 2416
BsnI	GGCC	7 cut(s)	968, 1359, 1421, 1702, 1718, 2131, 2299
BsoBI	CYCGRG	1 cut(s)	1319
Bsp1286I	GDGCHC	2 cut(s)	60, 1132
Bsp13I	TCCGGA	1 cut(s)	1143
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	8 cut(s)	67, 126, 153, 162, 246, 768, 949, 2170
BspANI	GGCC	7 cut(s)	968, 1359, 1421, 1702, 1718, 2131, 2299
BspCNI	CTCAG	4 cut(s)	291, 682, 1144, 1606
BspEI	TCCGGA	1 cut(s)	1143
BspFNI	CGCG	3 cut(s)	50, 189, 246
BspHI	TCATGA	2 cut(s)	349, 1804
BspLI	GGNNCC	8 cut(s)	228, 250, 376, 450, 609, 666, 792, 1792
BspMI	ACCTGC	1 cut(s)	1681
BspPI	GGATC	6 cut(s)	617, 785, 798, 817, 867, 2488
BspQI	GCTCTTC	1 cut(s)	1059
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	1179, 2103
BsrI	ACTGG	5 cut(s)	1159, 1335, 1619, 1935, 2072
BssECI	CCNNGG	5 cut(s)	157, 408, 660, 1320, 1734
BssNI	GRCGYC	3 cut(s)	102, 216, 249
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	408, 1734
Bst2BI	CACGAG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	543, 719, 1493, 1747
Bst6I	CTCTTC	4 cut(s)	1059, 1458, 1701, 2079
BstACI	GRCGYC	3 cut(s)	102, 216, 249
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	7 cut(s)	359, 432, 2021, 2133, 2258, 2422, 2549
BstDEI	CTNAG	8 cut(s)	299, 669, 692, 1026, 1131, 1561, 1593, 1818
BstDSI	CCRYGG	1 cut(s)	660
BstENI	CCTNNNNNAGG	2 cut(s)	50, 2496
BstF5I	GGATG	7 cut(s)	174, 691, 1039, 1164, 1489, 2044, 2392
BstFNI	CGCG	3 cut(s)	50, 189, 246
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	6 cut(s)	152, 189, 251, 400, 1089, 2107
BstMAI	GTCTC	3 cut(s)	572, 732, 978
BstMCI	CGRYCG	1 cut(s)	1360
BstMWI	GCNNNNNNNGC	9 cut(s)	94, 304, 404, 436, 1450, 1729, 1823, 2102, 2132
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	3 cut(s)	1938, 2005, 2551
BstSCI	CCNGG	3 cut(s)	157, 377, 2126
BstSFI	CTRYAG	2 cut(s)	1644, 1912
BstUI	CGCG	3 cut(s)	50, 189, 246
BstV1I	GCAGC	6 cut(s)	196, 213, 311, 451, 566, 1456
BstX2I	RGATCY	5 cut(s)	474, 790, 809, 1234, 2480
BstYI	RGATCY	5 cut(s)	474, 790, 809, 1234, 2480
BstZI	CGGCCG	1 cut(s)	1357
BsuI	GTATCC	1 cut(s)	1900
BsuRI	GGCC	7 cut(s)	968, 1359, 1421, 1702, 1718, 2131, 2299
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	7 cut(s)	174, 691, 1039, 1164, 1489, 2044, 2392
BtsI	GCAGTG	1 cut(s)	2437
BtsIMutI	CAGTG	3 cut(s)	1342, 2079, 2437
BtuMI	TCGCGA	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	1681
Cac8I	GCNNGC	7 cut(s)	359, 432, 2021, 2133, 2258, 2422, 2549
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	2 cut(s)	349, 1804
CfoI	GCGC	6 cut(s)	152, 189, 251, 400, 1089, 2107
Cfr13I	GGNCC	7 cut(s)	226, 279, 1141, 1586, 1717, 1791, 2359
CseI	GACGC	6 cut(s)	110, 178, 205, 277, 313, 445
Csp6I	GTAC	5 cut(s)	37, 601, 689, 1999, 2288
CspCI	CAANNNNNGTGG	4 cut(s)	352, 387, 2124, 2159
CviAII	CATG	9 cut(s)	81, 350, 863, 1805, 1935, 2002, 2179, 2548, 2552
CviQI	GTAC	5 cut(s)	37, 601, 689, 1999, 2288
DdeI	CTNAG	8 cut(s)	299, 669, 692, 1026, 1131, 1561, 1593, 1818
DinI	GGCGCC	1 cut(s)	250
DraI	TTTAAA	1 cut(s)	655
EaeI	YGGCCR	3 cut(s)	1357, 1419, 2129
EagI	CGGCCG	1 cut(s)	1357
Eam1104I	CTCTTC	4 cut(s)	1059, 1458, 1701, 2079
EarI	CTCTTC	4 cut(s)	1059, 1458, 1701, 2079
EciI	GGCGGA	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	1357
Eco130I	CCWWGG	2 cut(s)	408, 1734
Eco147I	AGGCCT	2 cut(s)	968, 2299
Eco32I	GATATC	1 cut(s)	2236
Eco47I	GGWCC	6 cut(s)	226, 279, 1141, 1586, 1791, 2359
Eco52I	CGGCCG	1 cut(s)	1357
Eco57I	CTGAAG	4 cut(s)	463, 747, 1659, 2478
Eco88I	CYCGRG	1 cut(s)	1319
EcoNI	CCTNNNNNAGG	2 cut(s)	50, 2496
EcoRII	CCWGG	1 cut(s)	377
EcoRV	GATATC	1 cut(s)	2236
EcoT14I	CCWWGG	2 cut(s)	408, 1734
EcoT22I	ATGCAT	1 cut(s)	2553
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	408, 1734
FaeI	CATG	9 cut(s)	84, 353, 866, 1808, 1938, 2005, 2182, 2551, 2555
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	4 cut(s)	176, 212, 1832, 2416
FatI	CATG	9 cut(s)	80, 349, 862, 1804, 1934, 2001, 2178, 2547, 2551
FauI	CCCGC	2 cut(s)	942, 2163
FbaI	TGATCA	1 cut(s)	1540
FblI	GTMKAC	2 cut(s)	219, 1344
Fnu4HI	GCNGC	9 cut(s)	153, 185, 202, 247, 325, 440, 555, 768, 1445
FokI	GGATG	7 cut(s)	181, 698, 1046, 1171, 1496, 2051, 2399
Fsp4HI	GCNGC	9 cut(s)	153, 185, 202, 247, 325, 440, 555, 768, 1445
FspBI	CTAG	2 cut(s)	558, 1394
GlaI	GCGC	6 cut(s)	151, 188, 250, 399, 1088, 2106
GluI	GCNGC	9 cut(s)	153, 185, 202, 247, 325, 440, 555, 768, 1445
GsuI	CTGGAG	4 cut(s)	77, 594, 990, 1839
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	7 cut(s)	968, 1359, 1421, 1702, 1718, 2131, 2299
HapII	CCGG	4 cut(s)	159, 239, 1144, 2128
HgaI	GACGC	6 cut(s)	110, 178, 205, 277, 313, 445
HhaI	GCGC	6 cut(s)	152, 189, 251, 400, 1089, 2107
Hin1I	GRCGYC	3 cut(s)	102, 216, 249
Hin1II	CATG	9 cut(s)	84, 353, 866, 1808, 1938, 2005, 2182, 2551, 2555
Hin6I	GCGC	6 cut(s)	150, 187, 249, 398, 1087, 2105
HinP1I	GCGC	6 cut(s)	150, 187, 249, 398, 1087, 2105
HincII	GTYRAC	2 cut(s)	220, 1489
HindII	GTYRAC	2 cut(s)	220, 1489
HindIII	AAGCTT	3 cut(s)	86, 1109, 2186
HpaII	CCGG	4 cut(s)	159, 239, 1144, 2128
HphI	GGTGA	6 cut(s)	22, 436, 460, 1280, 1289, 1505
Hpy166II	GTNNAC	3 cut(s)	220, 1345, 1489
Hpy8I	GTNNAC	3 cut(s)	220, 1345, 1489
HpyCH4III	ACNGT	4 cut(s)	543, 719, 1493, 1747
HpyCH4IV	ACGT	2 cut(s)	366, 1126
HpyF10VI	GCNNNNNNNGC	9 cut(s)	94, 304, 404, 436, 1450, 1729, 1823, 2102, 2132
HpyF3I	CTNAG	8 cut(s)	299, 669, 692, 1026, 1131, 1561, 1593, 1818
HpySE526I	ACGT	2 cut(s)	366, 1126
Hsp92I	GRCGYC	3 cut(s)	102, 216, 249
Hsp92II	CATG	9 cut(s)	84, 353, 866, 1808, 1938, 2005, 2182, 2551, 2555
HspAI	GCGC	6 cut(s)	150, 187, 249, 398, 1087, 2105
KasI	GGCGCC	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	1143
Ksp22I	TGATCA	1 cut(s)	1540
LguI	GCTCTTC	1 cut(s)	1059
LmnI	GCTCC	9 cut(s)	55, 74, 241, 374, 454, 613, 1009, 1084, 1858
Lsp1109I	GCAGC	6 cut(s)	196, 213, 311, 451, 566, 1456
MaeI	CTAG	2 cut(s)	558, 1394
MaeII	ACGT	2 cut(s)	366, 1126
MaeIII	GTNAC	8 cut(s)	466, 719, 814, 838, 994, 1277, 1603, 2074
MbiI	CCGCTC	1 cut(s)	69
MfeI	CAATTG	1 cut(s)	2270
MflI	RGATCY	5 cut(s)	474, 790, 809, 1234, 2480
MhlI	GDGCHC	2 cut(s)	60, 1132
MlsI	TGGCCA	1 cut(s)	1421
MluCI	AATT	8 cut(s)	618, 744, 888, 1503, 1711, 1795, 2118, 2270
MluNI	TGGCCA	1 cut(s)	1421
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	1340, 1901
MmeI	TCCRAC	3 cut(s)	146, 366, 1875
Mox20I	TGGCCA	1 cut(s)	1421
Mph1103I	ATGCAT	1 cut(s)	2553
MroI	TCCGGA	1 cut(s)	1143
MroXI	GAANNNNTTC	1 cut(s)	1389
MscI	TGGCCA	1 cut(s)	1421
MseI	TTAA	7 cut(s)	516, 597, 654, 885, 1752, 1761, 2091
Msp20I	TGGCCA	1 cut(s)	1421
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	4 cut(s)	159, 239, 1144, 2128
MspR9I	CCNGG	3 cut(s)	159, 379, 2128
MunI	CAATTG	1 cut(s)	2270
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	3 cut(s)	50, 189, 246
MwoI	GCNNNNNNNGC	9 cut(s)	94, 304, 404, 436, 1450, 1729, 1823, 2102, 2132
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	159, 2128
NlaIII	CATG	9 cut(s)	84, 353, 866, 1808, 1938, 2005, 2182, 2551, 2555
NlaIV	GGNNCC	8 cut(s)	228, 250, 376, 450, 609, 666, 792, 1792
NmeAIII	GCCGAG	2 cut(s)	601, 1948
NmuCI	GTSAC	6 cut(s)	466, 719, 814, 838, 1277, 2074
NruI	TCGCGA	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	2553
NspI	RCATGY	3 cut(s)	1938, 2005, 2551
PaeI	GCATGC	1 cut(s)	2551
PagI	TCATGA	2 cut(s)	349, 1804
PceI	AGGCCT	2 cut(s)	968, 2299
PciSI	GCTCTTC	1 cut(s)	1059
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 204, 213, 216
PdmI	GAANNNNTTC	1 cut(s)	1389
PfeI	GAWTC	8 cut(s)	419, 1196, 1250, 1520, 1552, 1865, 1877, 2197
PflFI	GACNNNGTC	2 cut(s)	224, 1139
PkrI	GCNGC	9 cut(s)	154, 186, 203, 248, 326, 441, 556, 769, 1446
PleI	GAGTC	2 cut(s)	1340, 1900
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	2 cut(s)	1340, 1900
PshBI	ATTAAT	1 cut(s)	2091
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	8 cut(s)	228, 250, 376, 450, 609, 666, 792, 1792
PspPI	GGNCC	7 cut(s)	226, 279, 1141, 1586, 1717, 1791, 2359
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	5 cut(s)	474, 790, 809, 1234, 2480
PsyI	GACNNNGTC	2 cut(s)	224, 1139
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	5 cut(s)	38, 602, 690, 2000, 2289
RsaNI	GTAC	5 cut(s)	37, 601, 689, 1999, 2288
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	1059
SaqAI	TTAA	7 cut(s)	516, 597, 654, 885, 1752, 1761, 2091
SatI	GCNGC	9 cut(s)	153, 185, 202, 247, 325, 440, 555, 768, 1445
Sau96I	GGNCC	7 cut(s)	226, 279, 1141, 1586, 1717, 1791, 2359
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	2 cut(s)	1340, 1901
ScrFI	CCNGG	3 cut(s)	159, 379, 2128
SduI	GDGCHC	2 cut(s)	60, 1132
SfcI	CTRYAG	2 cut(s)	1644, 1912
SfoI	GGCGCC	1 cut(s)	250
SinI	GGWCC	6 cut(s)	226, 279, 1141, 1586, 1791, 2359
SmlI	CTYRAG	2 cut(s)	515, 2189
SmoI	CTYRAG	2 cut(s)	515, 2189
SphI	GCATGC	1 cut(s)	2551
Sse9I	AATT	8 cut(s)	618, 744, 888, 1503, 1711, 1795, 2118, 2270
SseBI	AGGCCT	2 cut(s)	968, 2299
SsiI	CCGC	8 cut(s)	67, 126, 153, 162, 246, 768, 949, 2170
SspDI	GGCGCC	1 cut(s)	248
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	558, 1394
StuI	AGGCCT	2 cut(s)	968, 2299
StyD4I	CCNGG	3 cut(s)	157, 377, 2126
StyI	CCWWGG	2 cut(s)	408, 1734
TaaI	ACNGT	4 cut(s)	543, 719, 1493, 1747
TaiI	ACGT	2 cut(s)	369, 1129
TaqI	TCGA	6 cut(s)	99, 141, 219, 336, 2161, 2265
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	8 cut(s)	618, 744, 888, 1503, 1711, 1795, 2118, 2270
TatI	WGTACW	4 cut(s)	36, 600, 688, 1998
TauI	GCSGC	3 cut(s)	155, 249, 770
TfiI	GAWTC	8 cut(s)	419, 1196, 1250, 1520, 1552, 1865, 1877, 2197
Tru1I	TTAA	7 cut(s)	516, 597, 654, 885, 1752, 1761, 2091
Tru9I	TTAA	7 cut(s)	516, 597, 654, 885, 1752, 1761, 2091
TscAI	CASTG	3 cut(s)	1342, 2079, 2437
TseFI	GTSAC	6 cut(s)	466, 719, 814, 838, 1277, 2074
TseI	GCWGC	6 cut(s)	184, 201, 324, 439, 554, 1444
Tsp45I	GTSAC	6 cut(s)	466, 719, 814, 838, 1277, 2074
TspGWI	ACGGA	1 cut(s)	2351
TspRI	CASTG	3 cut(s)	1342, 2079, 2437
Tth111I	GACNNNGTC	2 cut(s)	224, 1139
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	6 cut(s)	226, 279, 1141, 1586, 1791, 2359
VspI	ATTAAT	1 cut(s)	2091
XagI	CCTNNNNNAGG	2 cut(s)	50, 2496
XapI	RAATTY	2 cut(s)	888, 1711
XbaI	TCTAGA	1 cut(s)	1393
XceI	RCATGY	3 cut(s)	1938, 2005, 2551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2032
XmiI	GTMKAC	2 cut(s)	219, 1344
XmnI	GAANNNNTTC	1 cut(s)	1389
XspI	CTAG	2 cut(s)	558, 1394
ZrmI	AGTACT	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	2553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.