Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015855

Physical Location & Seq

Genomic Coordinates Forward (+)

13116028 .. 13116955

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAGACAATGGAAGGACGACAATATAATTACCAAGACAGCATAAACGCGAGCTCCTCCATGGTGGTGCCTCACTCGCCTTGGCACTCTCCGGTTCCTTATCTCTTCGGTGGTTTGGCCGCCATGTTGGCTCTCATCTGCGTCGCTCTTCTCATCCTCGCATGTTCCTACTGGAGACTCTCCGGCTCCGCTGAGAGAGATCTTGAGGCCGGAGATGATGCCAAACCCGACAATGACACCAACAAAACTAAGCACACAGAAATGCCGGAGAAGTTTCTCGTCATAATGGCCGGTGATGTCAGACCTACTTACTTGGCTACGCCAGCGACTCGGTCTGAGCAAAGCTGTACTTGCGGCGATCATAACGAAGAAGAAGGAAGAAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016032 GO:0019048 GO:0032879 GO:0032890 GO:0032940 GO:0034762 GO:0034765 GO:0035821 GO:0043207 GO:0043269 GO:0044003 GO:0044070 GO:0044403 GO:0044419 GO:0046903 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.22

Weight (kDa)

5.07

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25760
fragaria_vesca	FvH4_6g45911
malus_domestica	MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica	Prupe.3G245300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0164101
rosa_laevigata	RLG00000021438
rosa_multiflora	Rmu_co8293903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086760
rosa_rugosa	Rorug02G0506600
rosa_samantha	Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana	Rw2G047560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	120, 189, 354
AcoI	YGGCCR	2 cut(s)	117, 288
AfaI	GTAC	1 cut(s)	349
AluBI	AGCT	2 cut(s)	54, 345
AluI	AGCT	2 cut(s)	54, 345
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	3 cut(s)	117, 207, 288
AsuHPI	GGTGA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	120, 355
BlsI	GCNGC	2 cut(s)	121, 356
BmiI	GGNNCC	3 cut(s)	69, 96, 187
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	60, 80
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	60, 80
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	183, 327
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	119, 209, 290
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	5 cut(s)	92, 183, 210, 266, 291
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	119, 209, 290
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	199, 358
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	3 cut(s)	120, 189, 354
BspANI	GGCC	3 cut(s)	119, 209, 290
BspCNI	CTCAG	2 cut(s)	184, 328
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	69, 96, 187
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	60, 80
BssMI	GATC	2 cut(s)	199, 358
BssT1I	CCWWGG	2 cut(s)	60, 80
Bst6I	CTCTTC	3 cut(s)	110, 153, 376
BstC8I	GCNNGC	2 cut(s)	52, 324
BstDEI	CTNAG	3 cut(s)	192, 249, 336
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	202, 361
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	199, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 128, 323, 351
BstNSI	RCATGY	1 cut(s)	165
BstUI	CGCG	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	119, 209, 290
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	52, 324
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	61, 124, 162
CviJI	RGCY	8 cut(s)	54, 119, 131, 186, 209, 290, 317, 345
CviKI_1	RGCY	8 cut(s)	54, 119, 131, 186, 209, 290, 317, 345
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	192, 249, 336
DpnI	GATC	2 cut(s)	201, 360
DpnII	GATC	2 cut(s)	199, 358
EaeI	YGGCCR	2 cut(s)	117, 288
Eam1104I	CTCTTC	3 cut(s)	110, 153, 376
EarI	CTCTTC	3 cut(s)	110, 153, 376
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	60, 80
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	60, 80
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	2 cut(s)	60, 80
FaeI	CATG	3 cut(s)	64, 127, 165
FaiI	YATR	7 cut(s)	27, 44, 62, 125, 163, 284, 363
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	3 cut(s)	60, 123, 161
Fnu4HI	GCNGC	2 cut(s)	120, 355
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	120, 355
GluI	GCNGC	2 cut(s)	120, 355
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	119, 209, 290
HapII	CCGG	5 cut(s)	92, 183, 210, 266, 291
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	64, 127, 165
HinfI	GANTC	2 cut(s)	177, 328
HpaII	CCGG	5 cut(s)	92, 183, 210, 266, 291
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	302, 337
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	8, 368
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 128, 323, 351
HpyF3I	CTNAG	3 cut(s)	192, 249, 336
Hsp92II	CATG	3 cut(s)	64, 127, 165
Kzo9I	GATC	2 cut(s)	199, 358
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	59, 191
LpnPI	CCDG	7 cut(s)	105, 157, 196, 223, 279, 304, 336
LweI	GCATC	1 cut(s)	208
MalI	GATC	2 cut(s)	201, 360
MboI	GATC	2 cut(s)	199, 358
MboII	GAAGA	5 cut(s)	97, 140, 380, 383, 390
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	2 cut(s)	171, 322
MnlI	CCTC	5 cut(s)	67, 81, 167, 199, 377
MslI	CAYNNNNRTG	2 cut(s)	65, 260
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	5 cut(s)	92, 183, 210, 266, 291
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	76, 128, 323, 351
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	199, 358
NlaIII	CATG	3 cut(s)	64, 127, 165
NlaIV	GGNNCC	3 cut(s)	69, 96, 187
NspI	RCATGY	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	121, 356
PleI	GAGTC	2 cut(s)	171, 322
PpsI	GAGTC	2 cut(s)	171, 322
Psp124BI	GAGCTC	1 cut(s)	56
PspN4I	GGNNCC	3 cut(s)	69, 96, 187
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	65, 260
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	2 cut(s)	120, 355
Sau3AI	GATC	2 cut(s)	199, 358
SchI	GAGTC	2 cut(s)	171, 322
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	3 cut(s)	56, 307, 347
SfaNI	GCATC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	65, 260
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	3 cut(s)	120, 189, 354
SstI	GAGCTC	1 cut(s)	56
StyI	CCWWGG	2 cut(s)	60, 80
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	28
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	2 cut(s)	122, 357
Tth111I	GACNNNGTC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.