FvH4_6g45911

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015855
Physical Location & Seq
Forward (+)
35135024 .. 35136280
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45911.t1

Sequence Viewer

Length: 609 bp
ATGCAGAAGCCTAACAGGATTACCCCAGTAGGTCCATACAGGCTGTTATATTGTTTGAGTAAGGGTGATAAAGCAGGGGTGTTGCAAGAGTTGGAGAAAGGCGTGGATCCGAATCTTGTGAACTATGACAAGAGAACAACTCTTCATTTGGTATCGTGTGAAGGCTGCACCGAAATTTTTATTCTACTTCTTCATAATGGTGCTAATCTTAACTACACAGATCGTTGGGGCCACACTCTAGCTTTACAAGTACTAGTGTGTACTACTACAGTGATTTTAGCAATGAGGTCTTTAATGGCGAACTCCACGAGCTCGGCTGCTTCTTCCGGTGACGCTGTTTTCAGCAACTGGAGATCTCCGATACCATACCTCTTCGGCGGCATAGCACTCATGTTGGGACTCGTCGCAGTTGCATTGCTGCTTCTGGTTTGCTCTTATCGTAAAACCTCAACAAGTTCGGGTGGTGAAGATGGAAAACCAACGTCACGGGGAATGGATGACATAGAGGGTGCAGAGTCGGAGCCCAAGATTCTTGTGATAATGGCCGGAGAGAAAACGCCGACATACTTGGCAAACCCCATCTCTTCCTCTACTAGTTTACCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.65

Weight (kDa)

6.81

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25760
fragaria_vesca FvH4_6g45911
malus_domestica MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica Prupe.3G245300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164101
rosa_laevigata RLG00000021438
rosa_multiflora Rmu_co8293903.1_g000001
rosa_roxburghii Rroxscaffold_2G00086760
rosa_rugosa Rorug02G0506600
rosa_samantha Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana Rw2G047560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 378
AclWI GGATC 2 cut(s) 101, 114
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 2 cut(s) 252, 262
AhlI ACTAGT 2 cut(s) 253, 593
AluBI AGCT 3 cut(s) 242, 312, 606
AluI AGCT 3 cut(s) 242, 312, 606
Alw21I GWGCWC 1 cut(s) 314
AlwI GGATC 2 cut(s) 101, 114
AlwNI CAGNNNCTG 1 cut(s) 348
AoxI GGCC 2 cut(s) 229, 543
ApeKI GCWGC 3 cut(s) 165, 317, 418
ApoI RAATTY 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 32, 229
AsuHPI GGTGA 3 cut(s) 77, 341, 476
AvaII GGWCC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 314, 525
BauI CACGAG 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 152, 304, 405
BccI CCATC 2 cut(s) 464, 587
BcuI ACTAGT 2 cut(s) 253, 593
BfaI CTAG 3 cut(s) 239, 254, 594
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 353
BisI GCNGC 4 cut(s) 166, 318, 379, 419
BlsI GCNGC 4 cut(s) 167, 319, 380, 420
BmcAI AGTACT 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 229
BmiI GGNNCC 3 cut(s) 108, 230, 522
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 124, 156
BpmI CTGGAG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 26, 353
Bse3DI GCAATG 2 cut(s) 288, 413
Bse8I GATNNNNATC 1 cut(s) 111
BseGI GGATG 1 cut(s) 502
BseJI GATNNNNATC 1 cut(s) 111
BseMI GCAATG 2 cut(s) 288, 413
BseNI ACTGG 2 cut(s) 26, 353
BseXI GCAGC 3 cut(s) 152, 304, 405
BsgI GTGCAG 2 cut(s) 151, 531
BshFI GGCC 2 cut(s) 231, 545
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 327, 546
BslFI GGGAC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 2 cut(s) 231, 545
Bsp1286I GDGCHC 2 cut(s) 314, 525
Bsp143I GATC 3 cut(s) 106, 220, 353
BspACI CCGC 1 cut(s) 378
BspANI GGCC 2 cut(s) 231, 545
BspLI GGNNCC 3 cut(s) 108, 230, 522
BspPI GGATC 2 cut(s) 101, 114
BsrDI GCAATG 2 cut(s) 288, 413
BsrI ACTGG 2 cut(s) 26, 353
BssMI GATC 3 cut(s) 106, 220, 353
BssSI CACGAG 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 3 cut(s) 147, 377, 589
BstF5I GGATG 1 cut(s) 502
BstKTI GATC 3 cut(s) 109, 223, 356
BstMBI GATC 3 cut(s) 106, 220, 353
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 152, 304, 405
BstX2I RGATCY 2 cut(s) 106, 353
BstYI RGATCY 2 cut(s) 106, 353
BsuRI GGCC 2 cut(s) 231, 545
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 32, 229
CseI GACGC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 251, 261
CviAII CATG 1 cut(s) 391
CviQI GTAC 2 cut(s) 251, 261
DpnI GATC 3 cut(s) 108, 222, 355
DpnII GATC 3 cut(s) 106, 220, 353
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 147, 377, 589
EarI CTCTTC 3 cut(s) 147, 377, 589
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 314, 525
Eco47I GGWCC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 314, 525
FaeI CATG 1 cut(s) 394
FaiI YATR 9 cut(s) 37, 49, 126, 195, 367, 383, 392, 503, 565
FaqI GGGAC 1 cut(s) 411
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 166, 318, 379, 419
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 2 cut(s) 314, 525
Fsp4HI GCNGC 4 cut(s) 166, 318, 379, 419
FspBI CTAG 3 cut(s) 239, 254, 594
GluI GCNGC 4 cut(s) 166, 318, 379, 419
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 2 cut(s) 231, 545
HapII CCGG 2 cut(s) 327, 546
HgaI GACGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 394
HinfI GANTC 4 cut(s) 112, 399, 515, 529
HpaII CCGG 2 cut(s) 327, 546
HphI GGTGA 3 cut(s) 77, 341, 476
Hpy166II GTNNAC 3 cut(s) 121, 261, 599
Hpy188I TCNGA 3 cut(s) 111, 360, 520
Hpy8I GTNNAC 3 cut(s) 121, 261, 599
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 5 cut(s) 4, 85, 168, 413, 512
HpySE526I ACGT 1 cut(s) 482
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 3 cut(s) 106, 220, 353
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 7 cut(s) 25, 39, 60, 334, 340, 410, 559
Lsp1109I GCAGC 3 cut(s) 152, 304, 405
MaeI CTAG 3 cut(s) 239, 254, 594
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 329, 483
MalI GATC 3 cut(s) 108, 222, 355
MboI GATC 3 cut(s) 106, 220, 353
MboII GAAGA 6 cut(s) 134, 182, 315, 364, 479, 576
MflI RGATCY 2 cut(s) 106, 353
MhlI GDGCHC 2 cut(s) 314, 525
MluCI AATT 1 cut(s) 174
MlyI GAGTC 2 cut(s) 393, 524
MmeI TCCRAC 2 cut(s) 72, 498
MnlI CCTC 5 cut(s) 279, 380, 457, 499, 598
MseI TTAA 2 cut(s) 210, 293
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 327, 546
NdeII GATC 3 cut(s) 106, 220, 353
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 3 cut(s) 108, 230, 522
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 329, 483
PfeI GAWTC 2 cut(s) 112, 529
PkrI GCNGC 4 cut(s) 167, 319, 380, 420
PleI GAGTC 2 cut(s) 393, 523
PpsI GAGTC 2 cut(s) 393, 523
Psp124BI GAGCTC 1 cut(s) 314
PspN4I GGNNCC 3 cut(s) 108, 230, 522
PspPI GGNCC 2 cut(s) 32, 229
PstNI CAGNNNCTG 1 cut(s) 348
PsuI RGATCY 2 cut(s) 106, 353
RsaI GTAC 2 cut(s) 252, 262
RsaNI GTAC 2 cut(s) 251, 261
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 210, 293
SatI GCNGC 4 cut(s) 166, 318, 379, 419
Sau3AI GATC 3 cut(s) 106, 220, 353
Sau96I GGNCC 2 cut(s) 32, 229
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 2 cut(s) 393, 524
SduI GDGCHC 2 cut(s) 314, 525
SetI ASST 8 cut(s) 34, 244, 290, 314, 372, 449, 485, 608
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 198
SpeI ACTAGT 2 cut(s) 253, 593
Sse9I AATT 1 cut(s) 174
SsiI CCGC 1 cut(s) 378
SspMI CTAG 3 cut(s) 239, 254, 594
SstI GAGCTC 1 cut(s) 314
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 485
TasI AATT 1 cut(s) 174
TatI WGTACW 2 cut(s) 250, 260
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 2 cut(s) 112, 529
Tru1I TTAA 2 cut(s) 210, 293
Tru9I TTAA 2 cut(s) 210, 293
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 329, 483
TseI GCWGC 3 cut(s) 165, 317, 418
Tsp45I GTSAC 2 cut(s) 329, 483
TspDTI ATGAA 2 cut(s) 134, 182
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 174
XspI CTAG 3 cut(s) 239, 254, 594
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.