MD17G1069200.v1.1

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015855
Physical Location & Seq
Reverse (-)
5609305 .. 5609643
339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1069200.v1.1.491

Sequence Viewer

Length: 339 bp
ATGAGGCCTTCAGCTGGAAACCCCACCACTGCAGCTACTGGCCACTACGCCATATTCAGAAACAGGAATTCTCCGACTCCATACCTCTTCGGAGGCCTAGCAGTCATGTTGGGGCTCGTCGCGGTAGCGCTGCTGATTCTTGCTTGCTCCTTTCACAGACCCTCCACCAGTTCAAGAAGCAGAAGTAGTGATCAAGATCAGAAACCAACTAGACCAGTGGACACAGAGGCTGGAGATTATGAACCCAAAATTCTTGTCATAATGGCTGGAGAGAAAACACCAACATGCTTGGCAAACCCCATCTCATGTCCTACTAGTCTCTCTCATGCACCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.88

Weight (kDa)

8.99

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25760
fragaria_vesca FvH4_6g45911
malus_domestica MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica Prupe.3G245300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164101
rosa_laevigata RLG00000021438
rosa_multiflora Rmu_co8293903.1_g000001
rosa_roxburghii Rroxscaffold_2G00086760
rosa_rugosa Rorug02G0506600
rosa_samantha Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana Rw2G047560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 67, 249
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 174
AhlI ACTAGT 1 cut(s) 314
AluBI AGCT 2 cut(s) 14, 35
AluI AGCT 2 cut(s) 14, 35
Alw26I GTCTC 1 cut(s) 323
AlwNI CAGNNNCTG 2 cut(s) 38, 230
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 3 cut(s) 5, 40, 94
ApeKI GCWGC 2 cut(s) 32, 130
ApoI RAATTY 2 cut(s) 67, 249
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 42
BanII GRGCYC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 44, 117
BccI CCATC 1 cut(s) 308
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 323
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 3 cut(s) 98, 210, 315
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 2 cut(s) 33, 131
BlsI GCNGC 2 cut(s) 34, 132
BpmI CTGGAG 2 cut(s) 252, 288
BsaBI GATNNNNATC 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 43, 168, 215
Bse8I GATNNNNATC 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 14
BseNI ACTGG 3 cut(s) 43, 168, 215
BseXI GCAGC 2 cut(s) 44, 117
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 3 cut(s) 7, 42, 96
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 323
BsnI GGCC 3 cut(s) 7, 42, 96
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 190, 196
BspACI CCGC 1 cut(s) 122
BspANI GGCC 3 cut(s) 7, 42, 96
BspFNI CGCG 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 34
BsrI ACTGG 3 cut(s) 43, 168, 215
BssMI GATC 2 cut(s) 190, 196
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 145
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 193, 199
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 190, 196
BstNSI RCATGY 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 44, 117
BsuRI GGCC 3 cut(s) 7, 42, 96
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 222
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 2 cut(s) 38, 230
CfoI GCGC 1 cut(s) 130
CviAII CATG 4 cut(s) 106, 285, 306, 326
CviJI RGCY 8 cut(s) 7, 14, 35, 42, 96, 115, 230, 266
CviKI_1 RGCY 8 cut(s) 7, 14, 35, 42, 96, 115, 230, 266
DpnI GATC 2 cut(s) 192, 198
DpnII GATC 2 cut(s) 190, 196
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco147I AGGCCT 2 cut(s) 7, 96
Eco24I GRGCYC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 4 cut(s) 109, 288, 309, 329
FaiI YATR 9 cut(s) 53, 82, 107, 240, 260, 286, 307, 327, 337
FatI CATG 4 cut(s) 105, 284, 305, 325
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 33, 131
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 33, 131
FspBI CTAG 3 cut(s) 98, 210, 315
GlaI GCGC 1 cut(s) 129
GluI GCNGC 2 cut(s) 33, 131
GsuI CTGGAG 2 cut(s) 252, 288
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 3 cut(s) 7, 42, 96
HhaI GCGC 1 cut(s) 130
Hin1II CATG 4 cut(s) 109, 288, 309, 329
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 2 cut(s) 76, 136
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 59, 75, 92, 201
Hpy188III TCNNGA 2 cut(s) 174, 194
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 32, 329
Hsp92II CATG 4 cut(s) 109, 288, 309, 329
HspAI GCGC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 196
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 6 cut(s) 24, 49, 181, 216, 228, 252
Lsp1109I GCAGC 2 cut(s) 44, 117
MaeI CTAG 3 cut(s) 98, 210, 315
MalI GATC 2 cut(s) 192, 198
MboI GATC 2 cut(s) 190, 196
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 117
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 2 cut(s) 67, 249
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 4 cut(s) 86, 95, 172, 220
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 283, 334
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 14
MvnI CGCG 1 cut(s) 122
NdeII GATC 2 cut(s) 190, 196
NlaIII CATG 4 cut(s) 109, 288, 309, 329
NspI RCATGY 1 cut(s) 288
PceI AGGCCT 2 cut(s) 7, 96
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 2 cut(s) 34, 132
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 2 cut(s) 38, 230
PvuII CAGCTG 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 283, 334
SatI GCNGC 2 cut(s) 33, 131
Sau3AI GATC 2 cut(s) 190, 196
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 16, 37, 87
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 283, 334
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 2 cut(s) 67, 249
SseBI AGGCCT 2 cut(s) 7, 96
SsiI CCGC 1 cut(s) 122
SspMI CTAG 3 cut(s) 98, 210, 315
StuI AGGCCT 2 cut(s) 7, 96
TasI AATT 2 cut(s) 67, 249
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 2 cut(s) 34, 222
TseI GCWGC 2 cut(s) 32, 130
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 2 cut(s) 34, 222
XapI RAATTY 2 cut(s) 67, 249
XceI RCATGY 1 cut(s) 288
XspI CTAG 3 cut(s) 98, 210, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.