Rroxscaffold_2G00086760

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015855
Physical Location & Seq
Reverse (-)
8931064 .. 8931411
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086760.1

Sequence Viewer

Length: 348 bp
ATGAGGTCTTTAATAGCAGACACCCCAGGCTCGGCTGCTTCTTCAGGTGGCGGTGCTGGTGGCGCTGTTTTCAGCAACTGGAGATCTCCGATGCCCTACCTCTTCGGCGGCCTAGCACTCATGTTGGGACTCGTCGCAGTTGCACTGCTAATTCTAGCTTGCTCCTATCGTAGAACCTCGTCCGACTCAACAAGTTCAGGTCGTGAAGCTGGAAAACCAACGTCAAGGGGAGTGGATGACATAGAGGCTGCAGAGTCGGAGCCCAAGATTCTCGTGGTAATGGCCGGAGAGAAAACGCCGACATACTTGGCAAAACCCATTTCTTCCTCTACTCGATTACCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

11.78

Weight (kDa)

8.93

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25760
fragaria_vesca FvH4_6g45911
malus_domestica MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica Prupe.3G245300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164101
rosa_laevigata RLG00000021438
rosa_multiflora Rmu_co8293903.1_g000001
rosa_roxburghii Rroxscaffold_2G00086760
rosa_rugosa Rorug02G0506600
rosa_samantha Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana Rw2G047560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 108
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 31
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 2 cut(s) 158, 209
AluI AGCT 2 cut(s) 158, 209
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 2 cut(s) 109, 282
ApeKI GCWGC 2 cut(s) 35, 248
AspLEI GCGC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 264
BauI CACGAG 1 cut(s) 272
BbvI GCAGC 2 cut(s) 22, 235
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 2 cut(s) 113, 155
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 66
BglII AGATCT 1 cut(s) 83
BisI GCNGC 3 cut(s) 36, 109, 249
BlsI GCNGC 3 cut(s) 37, 110, 250
Bme1390I CCNGG 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 22, 235
BshFI GGCC 2 cut(s) 111, 284
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 111, 284
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 2 cut(s) 51, 108
BspANI GGCC 2 cut(s) 111, 284
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 22, 235
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 111, 284
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 1 cut(s) 121
CviJI RGCY 8 cut(s) 30, 35, 111, 158, 209, 248, 262, 284
CviKI_1 RGCY 8 cut(s) 30, 35, 111, 158, 209, 248, 262, 284
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 1 cut(s) 124
FaiI YATR 3 cut(s) 122, 242, 304
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 36, 109, 249
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 36, 109, 249
FspBI CTAG 2 cut(s) 113, 155
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 36, 109, 249
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 111, 284
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 4 cut(s) 129, 185, 254, 268
HpaII CCGG 1 cut(s) 285
Hpy188I TCNGA 3 cut(s) 90, 184, 259
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 143, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 167, 259
LpnPI CCDG 8 cut(s) 12, 30, 39, 42, 64, 183, 195, 298
Lsp1109I GCAGC 2 cut(s) 22, 235
LweI GCATC 1 cut(s) 81
MaeI CTAG 2 cut(s) 113, 155
MaeII ACGT 1 cut(s) 221
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 33, 94, 315
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 150
MlyI GAGTC 3 cut(s) 123, 179, 263
MmeI TCCRAC 2 cut(s) 207, 237
MnlI CCTC 4 cut(s) 110, 187, 238, 337
MseI TTAA 1 cut(s) 11
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 83
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 11
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 37, 110, 250
PleI GAGTC 3 cut(s) 123, 179, 262
PpsI GAGTC 3 cut(s) 123, 179, 262
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 83
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 36, 109, 249
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 3 cut(s) 123, 179, 263
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 8, 49, 102, 160, 179, 202, 211, 224
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 51, 108
SspMI CTAG 2 cut(s) 113, 155
StyD4I CCNGG 1 cut(s) 25
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 150
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 150
TseI GCWGC 2 cut(s) 35, 248
TspRI CASTG 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 113, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.