Rw2G047560

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015855
Physical Location & Seq
Forward (+)
74852085 .. 74852520
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047560.1

Sequence Viewer

Length: 342 bp
ATGAGGTCTTTAATAGCAGACACCCCAGGCTCGGCTGCTTCTTCAGGTGGCGGTGCTGGTGACGCTGTTTTCAGCAACTGGAGATCTCCGACGCCCTACCTCTTCGGCGGCCTAGCACTCATGTTGGGACTCGTCGCAGTTGCATTGCTAATTCTAGCTTGCTCCTATCGTAGAACCTCGTCCGACTCAACAAGTTCAGGTCGTGAAGATGGAAAACCAACGTCAAGGGGAGTGGATGACATAGAGGCTGCGGAGCCTAAGATTCTCGTGGTAATGGCCGGAGAGAAAACGCCGACATACTTGGCAAAACCCATTTCTTCCTCTACTCGATTACCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.63

Weight (kDa)

7.87

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25760
fragaria_vesca FvH4_6g45911
malus_domestica MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica Prupe.3G245300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164101
rosa_laevigata RLG00000021438
rosa_multiflora Rmu_co8293903.1_g000001
rosa_roxburghii Rroxscaffold_2G00086760
rosa_rugosa Rorug02G0506600
rosa_samantha Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana Rw2G047560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 51, 108, 251
AcoI YGGCCR 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 31
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 2 cut(s) 109, 276
ApeKI GCWGC 2 cut(s) 35, 248
AsuHPI GGTGA 1 cut(s) 71
BauI CACGAG 1 cut(s) 266
BbvI GCAGC 2 cut(s) 22, 235
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 2 cut(s) 113, 155
BglII AGATCT 1 cut(s) 83
BisI GCNGC 3 cut(s) 36, 109, 249
BlsI GCNGC 3 cut(s) 37, 110, 250
Bme1390I CCNGG 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 22, 235
BshFI GGCC 2 cut(s) 111, 278
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 111, 278
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 3 cut(s) 51, 108, 251
BspANI GGCC 2 cut(s) 111, 278
BspLI GGNNCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 83
BssNI GRCGYC 1 cut(s) 92
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 22, 235
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 111, 278
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 78
CseI GACGC 2 cut(s) 71, 100
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 1 cut(s) 121
CviJI RGCY 7 cut(s) 30, 35, 111, 158, 248, 256, 278
CviKI_1 RGCY 7 cut(s) 30, 35, 111, 158, 248, 256, 278
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 124
FaiI YATR 3 cut(s) 122, 242, 298
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 36, 109, 249
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 36, 109, 249
FspBI CTAG 2 cut(s) 113, 155
GluI GCNGC 3 cut(s) 36, 109, 249
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 2 cut(s) 111, 278
HapII CCGG 1 cut(s) 279
HgaI GACGC 2 cut(s) 71, 100
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 1 cut(s) 124
HinfI GANTC 3 cut(s) 129, 185, 262
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 90, 184
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 2 cut(s) 94, 137
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 167, 253
LpnPI CCDG 7 cut(s) 12, 30, 39, 42, 64, 183, 292
Lsp1109I GCAGC 2 cut(s) 22, 235
MaeI CTAG 2 cut(s) 113, 155
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 4 cut(s) 33, 94, 218, 309
MflI RGATCY 1 cut(s) 83
MluCI AATT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 123, 179
MmeI TCCRAC 2 cut(s) 113, 207
MnlI CCTC 4 cut(s) 110, 187, 238, 331
MseI TTAA 1 cut(s) 11
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 83
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 255
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 37, 110, 250
PleI GAGTC 2 cut(s) 123, 179
PpsI GAGTC 2 cut(s) 123, 179
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 83
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 36, 109, 249
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 2 cut(s) 123, 179
ScrFI CCNGG 1 cut(s) 27
SetI ASST 7 cut(s) 8, 49, 102, 160, 179, 202, 224
Sse9I AATT 1 cut(s) 150
SsiI CCGC 3 cut(s) 51, 108, 251
SspMI CTAG 2 cut(s) 113, 155
StyD4I CCNGG 1 cut(s) 25
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 328
TasI AATT 1 cut(s) 150
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 35, 248
Tsp45I GTSAC 1 cut(s) 59
XspI CTAG 2 cut(s) 113, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.