Rorug02G0506600

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015855
Physical Location & Seq
Reverse (-)
63784700 .. 63814269
29570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0506600.1

Sequence Viewer

Length: 789 bp
ATGGCAGGTGATCTTGTTAGGGTAATGCAGTGGCAGGGACGATGTTTCGGGAGGCTATGGACTGCCATTGATATACTCAATATCCTTGTTCTTGTGGCTATACATGGCCTCGCTCTTCTAGTGCCTTTTCATTTCAGCTGGTCTGCGTTTTGGACGGCCCCAGTACTCTTGCATGTCACAGGTCTAGGCGGAAGTCCAATTGAATGGGTGAGTTCCCACAGAAGTCACCATCAGTTTAGTGATACATCCAGTGACCCTCATACCCCCGTTAAGGGACTTTGGTATAGTCATATCGGTTGGTTCTATGCTTATCATTCTCGGATCGATGAATTAGCAAAATTACTAAAGAACGTTGGAGATTTAAAGAAGCAGTGGTACTATAGGTTTCTTCATTACACATGCATCTTTCACACAGTTTTTCTTGGAGCTGTATTGTATGCAGTAGGAGGATTACCCTTTATAGTTTGGGGACTGGGTGTGAGGCTGGTATATGTTTACCATGTAACTTTTTCAATAAATTCGATTTGCCACACATGGGGAAAGCAAGTTTGGGATACCGGTGATTCGTCAAAAAACAATTGGTTGTTTGGGTTGCTAGCTCATGGAGAAGGATGGCACAACAACCACCATGCATTTGAGTACTCAGCTCGGCAAGGCCTGGAGTGGTGGCAAATTGATGTTACATGGTATGTAATCAAAATTCTCGAAGTTGTTGGTTTGGCGACGGACGTTAAGCTCCCAAGTGAAACTCAGAAGAAACAAAAAGCTTTATGCAACAGAGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

30.16

Weight (kDa)

8.98

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 62 - 226 5.7e-14 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25760
fragaria_vesca FvH4_6g45911
malus_domestica MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica Prupe.3G245300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164101
rosa_laevigata RLG00000021438
rosa_multiflora Rmu_co8293903.1_g000001
rosa_roxburghii Rroxscaffold_2G00086760
rosa_rugosa Rorug02G0506600
rosa_samantha Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana Rw2G047560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AclI AACGTT 1 cut(s) 351
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 517, 699
AfaI GTAC 3 cut(s) 165, 377, 641
AfiI CCNNNNNNNGG 3 cut(s) 271, 272, 535
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 2 cut(s) 203, 513
AjnI CCWGG 1 cut(s) 657
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 6 cut(s) 138, 428, 599, 647, 736, 767
AluI AGCT 6 cut(s) 138, 428, 599, 647, 736, 767
AlwI GGATC 1 cut(s) 329
AoxI GGCC 3 cut(s) 106, 156, 655
ApoI RAATTY 2 cut(s) 517, 699
AsiGI ACCGGT 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 20, 218, 220, 572
AsuNHI GCTAGC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BccI CCATC 2 cut(s) 237, 606
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 547
BfaI CTAG 3 cut(s) 119, 185, 596
BfmI CTRYAG 1 cut(s) 379
BfuI GTATCC 1 cut(s) 547
BmcAI AGTACT 2 cut(s) 165, 641
Bme1390I CCNGG 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 2 cut(s) 155, 482
BmsI GCATC 1 cut(s) 411
BmtI GCTAGC 1 cut(s) 599
BmuI ACTGGG 2 cut(s) 155, 482
BpmI CTGGAG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 557
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 272, 535
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 3 cut(s) 161, 249, 477
BseBI CCWGG 1 cut(s) 659
BseCI ATCGAT 1 cut(s) 324
BseGI GGATG 2 cut(s) 245, 617
BseLI CCNNNNNNNGG 3 cut(s) 271, 272, 535
BseMII CTCAG 2 cut(s) 657, 764
BseNI ACTGG 3 cut(s) 161, 249, 477
BshFI GGCC 3 cut(s) 108, 158, 657
BshTI ACCGGT 1 cut(s) 557
BshVI ATCGAT 1 cut(s) 324
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 3 cut(s) 51, 288, 483
BslI CCNNNNNNNGG 3 cut(s) 271, 272, 535
BsmFI GGGAC 3 cut(s) 51, 288, 483
BsnI GGCC 3 cut(s) 108, 158, 657
Bsp143I GATC 2 cut(s) 10, 321
BspACI CCGC 1 cut(s) 189
BspANI GGCC 3 cut(s) 108, 158, 657
BspCNI CTCAG 2 cut(s) 656, 763
BspDI ATCGAT 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 159
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 3 cut(s) 161, 249, 477
BssAI RCCGGY 1 cut(s) 557
BssMI GATC 2 cut(s) 10, 321
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 643, 750
BstF5I GGATG 2 cut(s) 245, 617
BstKTI GATC 2 cut(s) 13, 324
BstMBI GATC 2 cut(s) 10, 321
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 2 cut(s) 176, 402
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 324
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 3 cut(s) 108, 158, 657
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 2 cut(s) 245, 617
BtsI GCAGTG 2 cut(s) 35, 377
BtsIMutI CAGTG 3 cut(s) 35, 256, 377
Cac8I GCNNGC 1 cut(s) 597
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 3 cut(s) 164, 376, 640
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 8 cut(s) 104, 173, 399, 500, 534, 602, 629, 684
CviQI GTAC 3 cut(s) 164, 376, 640
DdeI CTNAG 2 cut(s) 643, 750
DpnI GATC 2 cut(s) 12, 323
DpnII GATC 2 cut(s) 10, 321
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 657
EcoT22I ATGCAT 2 cut(s) 404, 634
FaeI CATG 8 cut(s) 107, 176, 402, 503, 537, 605, 632, 687
FaqI GGGAC 3 cut(s) 51, 288, 483
FatI CATG 8 cut(s) 103, 172, 398, 499, 533, 601, 628, 683
FokI GGATG 2 cut(s) 232, 624
FspBI CTAG 3 cut(s) 119, 185, 596
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 3 cut(s) 108, 158, 657
HapII CCGG 1 cut(s) 558
Hin1II CATG 8 cut(s) 107, 176, 402, 503, 537, 605, 632, 687
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 1 cut(s) 563
HpaII CCGG 1 cut(s) 558
HphI GGTGA 4 cut(s) 20, 218, 220, 572
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 2 cut(s) 321, 753
Hpy188III TCNNGA 2 cut(s) 49, 704
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 727
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 2 cut(s) 351, 729
HpyCH4V TGCA 6 cut(s) 28, 172, 402, 440, 632, 774
HpyF3I CTNAG 2 cut(s) 643, 750
HpySE526I ACGT 2 cut(s) 351, 729
Hsp92II CATG 8 cut(s) 107, 176, 402, 503, 537, 605, 632, 687
Kzo9I GATC 2 cut(s) 10, 321
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 425, 741
LweI GCATC 1 cut(s) 411
MaeI CTAG 3 cut(s) 119, 185, 596
MaeII ACGT 2 cut(s) 351, 729
MaeIII GTNAC 5 cut(s) 175, 224, 251, 502, 679
MalI GATC 2 cut(s) 12, 323
MboI GATC 2 cut(s) 10, 321
MboII GAAGA 3 cut(s) 107, 380, 766
MfeI CAATTG 2 cut(s) 198, 577
MluCI AATT 7 cut(s) 198, 329, 338, 517, 577, 672, 699
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 5 cut(s) 45, 119, 267, 440, 474
Mph1103I ATGCAT 2 cut(s) 404, 634
MseI TTAA 3 cut(s) 270, 362, 732
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 659
MunI CAATTG 2 cut(s) 198, 577
MvaI CCWGG 1 cut(s) 659
NdeII GATC 2 cut(s) 10, 321
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 8 cut(s) 107, 176, 402, 503, 537, 605, 632, 687
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 3 cut(s) 175, 224, 251
NsiI ATGCAT 2 cut(s) 404, 634
NspI RCATGY 2 cut(s) 176, 402
PceI AGGCCT 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 563
PinAI ACCGGT 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 138
RsaI GTAC 3 cut(s) 165, 377, 641
RsaNI GTAC 3 cut(s) 164, 376, 640
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 270, 362, 732
Sau3AI GATC 2 cut(s) 10, 321
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 2 cut(s) 165, 641
ScrFI CCNGG 1 cut(s) 659
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 379
Sse9I AATT 7 cut(s) 198, 329, 338, 517, 577, 672, 699
SseBI AGGCCT 1 cut(s) 657
SsiI CCGC 1 cut(s) 189
SspMI CTAG 3 cut(s) 119, 185, 596
StuI AGGCCT 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 2 cut(s) 354, 732
TaqI TCGA 3 cut(s) 324, 521, 705
TasI AATT 7 cut(s) 198, 329, 338, 517, 577, 672, 699
TatI WGTACW 2 cut(s) 163, 639
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 3 cut(s) 270, 362, 732
Tru9I TTAA 3 cut(s) 270, 362, 732
TscAI CASTG 3 cut(s) 35, 256, 377
TseFI GTSAC 3 cut(s) 175, 224, 251
Tsp45I GTSAC 3 cut(s) 175, 224, 251
TspDTI ATGAA 3 cut(s) 119, 342, 380
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 3 cut(s) 35, 256, 377
XapI RAATTY 2 cut(s) 517, 699
XceI RCATGY 2 cut(s) 176, 402
XspI CTAG 3 cut(s) 119, 185, 596
ZrmI AGTACT 2 cut(s) 165, 641
Zsp2I ATGCAT 2 cut(s) 404, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.