MD09G1078900.v1.1

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015855
Physical Location & Seq
Reverse (-)
5543504 .. 5543833
330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1078900.v1.1.491

Sequence Viewer

Length: 330 bp
ATGAGGCCTTCAGCTGCAAACTCCACCACCGCGGCTACTGGTCACGACGCCATATTCAGAAACTGGAATTCTCCGATGCCATACCTATTTGGAGGCCTAGCACTCATGTTGGGGCTCGTTGCGGCAGCGTTGCTGATTCTTGCTTGCTCCCTTCACAAGAGCTCAAGCAGCAGCAGTAGTGATCAAGATCAGAAACCAACTAGACCAGTGGACATAGAGGCTGGAGATTCTGAATCCAAAATTCTTGTCATAATGGCTGGAGAGAAAACACCAACATACTTGGCAAACCCCATCACATGTTCTACTACTCTCTCTCATGCACCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.4

Weight (kDa)

6.24

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25760
fragaria_vesca FvH4_6g45911
malus_domestica MD09G1078900.v1.1 MD17G1069200.v1.1
prunus_persica Prupe.3G245300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164101
rosa_laevigata RLG00000021438
rosa_multiflora Rmu_co8293903.1_g000001
rosa_roxburghii Rroxscaffold_2G00086760
rosa_rugosa Rorug02G0506600
rosa_samantha Rh2AG574900 Rh2BG585400 Rh2CG556300 Rh2DG595100
rosa_wichuraiana Rw2G047560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 32, 122
AcsI RAATTY 2 cut(s) 67, 240
AcyI GRCGYC 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 296
AluBI AGCT 2 cut(s) 14, 162
AluI AGCT 2 cut(s) 14, 162
Alw21I GWGCWC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 63
AoxI GGCC 2 cut(s) 5, 94
ApeKI GCWGC 4 cut(s) 14, 125, 168, 171
ApoI RAATTY 2 cut(s) 67, 240
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
BanII GRGCYC 2 cut(s) 117, 164
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 137, 180, 183
BccI CCATC 1 cut(s) 299
BclI TGATCA 1 cut(s) 181
BfaI CTAG 2 cut(s) 98, 201
BisI GCNGC 6 cut(s) 15, 33, 123, 126, 169, 172
BlsI GCNGC 6 cut(s) 16, 34, 124, 127, 170, 173
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 243, 279
BpuEI CTTGAG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 43, 68, 206
Bse8I GATNNNNATC 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 186
BseNI ACTGG 3 cut(s) 43, 68, 206
BseXI GCAGC 3 cut(s) 137, 180, 183
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 7, 96
BsiHKAI GWGCWC 1 cut(s) 164
BsnI GGCC 2 cut(s) 7, 96
Bsp1286I GDGCHC 2 cut(s) 117, 164
Bsp143I GATC 2 cut(s) 181, 187
BspACI CCGC 3 cut(s) 30, 32, 122
BspANI GGCC 2 cut(s) 7, 96
BspFNI CGCG 1 cut(s) 32
BsrI ACTGG 3 cut(s) 43, 68, 206
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 181, 187
BssNI GRCGYC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 2 cut(s) 184, 190
BstMBI GATC 2 cut(s) 181, 187
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 300
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 137, 180, 183
BsuRI GGCC 2 cut(s) 7, 96
BtgI CCRYGG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 63
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 1 cut(s) 56
CviAII CATG 3 cut(s) 106, 297, 317
CviJI RGCY 8 cut(s) 7, 14, 35, 96, 115, 162, 221, 257
CviKI_1 RGCY 8 cut(s) 7, 14, 35, 96, 115, 162, 221, 257
DpnI GATC 2 cut(s) 183, 189
DpnII GATC 2 cut(s) 181, 187
Ecl136II GAGCTC 1 cut(s) 162
Eco147I AGGCCT 2 cut(s) 7, 96
Eco24I GRGCYC 2 cut(s) 117, 164
Eco53kI GAGCTC 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 67
EcoT38I GRGCYC 2 cut(s) 117, 164
FaeI CATG 3 cut(s) 109, 300, 320
FaiI YATR 8 cut(s) 53, 82, 107, 215, 251, 277, 298, 318
FatI CATG 3 cut(s) 105, 296, 316
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 6 cut(s) 15, 33, 123, 126, 169, 172
FriOI GRGCYC 2 cut(s) 117, 164
Fsp4HI GCNGC 6 cut(s) 15, 33, 123, 126, 169, 172
FspBI CTAG 2 cut(s) 98, 201
GluI GCNGC 6 cut(s) 15, 33, 123, 126, 169, 172
GsuI CTGGAG 2 cut(s) 243, 279
HaeIII GGCC 2 cut(s) 7, 96
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 109, 300, 320
HinfI GANTC 3 cut(s) 136, 227, 233
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 5 cut(s) 59, 75, 192, 232, 329
Hpy188III TCNNGA 2 cut(s) 44, 185
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 18, 161
HpyCH4V TGCA 2 cut(s) 17, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 109, 300, 320
Ksp22I TGATCA 1 cut(s) 181
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 2 cut(s) 181, 187
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 5 cut(s) 24, 49, 207, 219, 243
Lsp1109I GCAGC 3 cut(s) 137, 180, 183
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 98, 201
MaeIII GTNAC 1 cut(s) 41
MalI GATC 2 cut(s) 183, 189
MboI GATC 2 cut(s) 181, 187
MhlI GDGCHC 2 cut(s) 117, 164
MluCI AATT 2 cut(s) 67, 240
MnlI CCTC 2 cut(s) 86, 211
MspA1I CMGCKG 2 cut(s) 14, 32
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 2 cut(s) 181, 187
NlaIII CATG 3 cut(s) 109, 300, 320
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 300
PceI AGGCCT 2 cut(s) 7, 96
PciI ACATGT 1 cut(s) 296
PfeI GAWTC 3 cut(s) 136, 227, 233
PkrI GCNGC 6 cut(s) 16, 34, 124, 127, 170, 173
PscI ACATGT 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 164
SacII CCGCGG 1 cut(s) 33
SatI GCNGC 6 cut(s) 15, 33, 123, 126, 169, 172
Sau3AI GATC 2 cut(s) 181, 187
SduI GDGCHC 2 cut(s) 117, 164
SetI ASST 3 cut(s) 16, 87, 164
SfaNI GCATC 1 cut(s) 66
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 2 cut(s) 67, 240
SseBI AGGCCT 2 cut(s) 7, 96
SsiI CCGC 3 cut(s) 30, 32, 122
SspMI CTAG 2 cut(s) 98, 201
SstI GAGCTC 1 cut(s) 164
StuI AGGCCT 2 cut(s) 7, 96
TasI AATT 2 cut(s) 67, 240
TauI GCSGC 2 cut(s) 35, 125
TfiI GAWTC 3 cut(s) 136, 227, 233
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 4 cut(s) 14, 125, 168, 171
Tsp45I GTSAC 1 cut(s) 41
TspRI CASTG 1 cut(s) 213
XapI RAATTY 2 cut(s) 67, 240
XceI RCATGY 1 cut(s) 300
XspI CTAG 2 cut(s) 98, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.