AT4G25845

protein)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015817
Physical Location & Seq
Forward (+)
13142088 .. 13142821
734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25845.1

Sequence Viewer

Length: 363 bp
ATGAAGAAGGATACATGCAAGGAAGGATCATCAATCTCGAGAAACTCATCGGTGGGATACTATGATGAACGGATGCCAGAGGGTGTTCCGTTCGAGTGGGAGATGCAGCCAGGGACTCCCATTAATACTCAACCACGGGAGGTTGTTCCTCCATTAAGTCCTCCTCCAGCTATGCTCAGCCTCGGCCTCCCCAAGCCATCCATCTCCATCGAAGAGCCAAAGAACTTTGTGTTTCCAACGAAGCTGAAGCTGCGGAATTGGAAACATCTTCATTGCAAGAGATATTTTTCTAGATTGACTAACAAAATGGTTTTGTCTTCAATTTGTTTGTACCCTGATAAACGCTACATGTGGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP

Protein Analysis

120

Amino Acids

13.97

Weight (kDa)

9.65

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25845 AT5G57400 AT5G57400
malus_domestica MD13G1252900.v1.1 MD16G1257400.v1.1
prunus_persica Prupe.1G085200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402361
rosa_laevigata RLG00000009100
rosa_multiflora Rmu_sc0002324.1_g000011
rosa_roxburghii Rroxscaffold_5G00347020
rosa_samantha Rh4AG112200 Rh4BG104800 Rh4CG119000 Rh4DG103700
rosa_wichuraiana Rw4G008990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 332
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 321
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 170, 244, 250
AluI AGCT 3 cut(s) 170, 244, 250
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 106, 250
AseI ATTAAT 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 118, 237
BccI CCATC 3 cut(s) 205, 209, 215
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 2 cut(s) 4, 50
BfaI CTAG 1 cut(s) 291
BfuI GTATCC 2 cut(s) 4, 50
BisI GCNGC 2 cut(s) 107, 251
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 2 cut(s) 108, 252
Bme1390I CCNGG 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 63, 93
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 110, 134, 181
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 110, 134, 181
BseGI GGATG 2 cut(s) 78, 197
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 118, 237
BshFI GGCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 1 cut(s) 26
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 110, 134, 181
BssMI GATC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 78, 197
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 18, 352
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 118, 237
BstV2I GAAGAC 1 cut(s) 309
BsuI GTATCC 2 cut(s) 4, 50
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 2 cut(s) 78, 197
Csp6I GTAC 1 cut(s) 331
CviAII CATG 2 cut(s) 15, 349
CviJI RGCY 8 cut(s) 109, 170, 180, 186, 196, 217, 244, 250
CviKI_1 RGCY 8 cut(s) 109, 170, 180, 186, 196, 217, 244, 250
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 2 cut(s) 18, 352
FaiI YATR 4 cut(s) 16, 63, 173, 350
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 14, 348
Fnu4HI GCNGC 2 cut(s) 107, 251
FokI GGATG 2 cut(s) 85, 184
Fsp4HI GCNGC 2 cut(s) 107, 251
FspBI CTAG 1 cut(s) 291
GluI GCNGC 2 cut(s) 107, 251
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 2 cut(s) 18, 352
HinfI GANTC 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 37, 39, 291
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 18, 106, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 18, 352
Kzo9I GATC 1 cut(s) 26
LguI GCTCTTC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 90, 96, 123, 180, 348
Lsp1109I GCAGC 2 cut(s) 118, 237
LweI GCATC 2 cut(s) 63, 93
MaeI CTAG 1 cut(s) 291
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 4 cut(s) 16, 224, 260, 309
MluCI AATT 2 cut(s) 256, 321
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 7 cut(s) 73, 133, 159, 171, 174, 191, 197
MseI TTAA 2 cut(s) 123, 155
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 26
NlaIII CATG 2 cut(s) 18, 352
NmeAIII GCCGAG 1 cut(s) 162
NspI RCATGY 2 cut(s) 18, 352
PaeR7I CTCGAG 1 cut(s) 37
PciI ACATGT 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 207
PkrI GCNGC 2 cut(s) 108, 252
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 348
PshBI ATTAAT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 123, 155
SatI GCNGC 2 cut(s) 107, 251
Sau3AI GATC 1 cut(s) 26
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 111
SetI ASST 4 cut(s) 144, 172, 246, 252
SfaNI GCATC 2 cut(s) 63, 93
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 2 cut(s) 256, 321
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 3 cut(s) 38, 93, 210
TasI AATT 2 cut(s) 256, 321
Tru1I TTAA 2 cut(s) 123, 155
Tru9I TTAA 2 cut(s) 123, 155
TseI GCWGC 2 cut(s) 106, 250
TspDTI ATGAA 3 cut(s) 17, 81, 260
TspGWI ACGGA 2 cut(s) 78, 85
VspI ATTAAT 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 2 cut(s) 18, 352
XhoI CTCGAG 1 cut(s) 37
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.