RLG00000009100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015817
Physical Location & Seq
Forward (+)
46513602 .. 46514836
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009100

Sequence Viewer

Length: 558 bp
ATGGCGGTGTGGCAATTTCTGACCCCAATGGCTGAGGCCGCACCCAGAATTAATGAACGCTTAACGACCACTGAAGGGGTTCCATTCAATTGGGAAATGCAGCCAGGGACACCCAGGAATCCACCTAAAGAAGAAGCAATTGCACCACTAACACCTCCTCCAGCAGTGATCAGCTTAGGACTACCCAAGCCATGCATTGATGTTCGACAGTCGAAGCCTCCAACAAGGCCAAGGCTTTGGTTTTGGAGAAAAAGCAAGAAAAACAAAGAAAGTAAAAATGTTACTACTGTTAACAATGTCGCCAGAGGATCAGATAAGTTTGATATGTTCGACTTCTGTAGCTCAGATTCTGAATTCATGGCATCAACTTCACCACGGAACTCAAGCTCTTCATCCTCATCGTCGCTTTCTTTCTCGAAAGGTCGACTTTCTAGGGAGTGTTCAAGTTTGCGGAGTACTCCAGCAAGGGATTCCTTCAGTAGTAACGCTGCTGCTCATTTCAGCTGCAGTCCTTGGAATTTTAGCTCTGTTCTGATTAGCATTGCAAGGCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.5

Weight (kDa)

10.03

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25845 AT5G57400 AT5G57400
malus_domestica MD13G1252900.v1.1 MD16G1257400.v1.1
prunus_persica Prupe.1G085200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402361
rosa_laevigata RLG00000009100
rosa_multiflora Rmu_sc0002324.1_g000011
rosa_roxburghii Rroxscaffold_5G00347020
rosa_samantha Rh4AG112200 Rh4BG104800 Rh4CG119000 Rh4DG103700
rosa_wichuraiana Rw4G008990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 424
AciI CCGC 4 cut(s) 5, 39, 451, 550
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 2 cut(s) 353, 517
AcuI CTGAAG 2 cut(s) 93, 460
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 88, 444
AjnI CCWGG 2 cut(s) 103, 113
AluBI AGCT 5 cut(s) 174, 342, 387, 504, 525
AluI AGCT 5 cut(s) 174, 342, 387, 504, 525
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 2 cut(s) 36, 227
ApeKI GCWGC 4 cut(s) 100, 488, 491, 504
ApoI RAATTY 2 cut(s) 353, 517
AseI ATTAAT 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 112, 475, 478, 491
BciT130I CCWGG 2 cut(s) 105, 115
BclI TGATCA 1 cut(s) 168
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 2 cut(s) 337, 505
BisI GCNGC 5 cut(s) 39, 101, 489, 492, 505
BlsI GCNGC 5 cut(s) 40, 102, 490, 493, 506
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 105, 115
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 105, 115
BmsI GCATC 1 cut(s) 371
BpmI CTGGAG 2 cut(s) 144, 444
Bpu10I CCTNAGC 2 cut(s) 33, 175
BpuEI CTTGAG 1 cut(s) 367
BsaJI CCNNGG 5 cut(s) 104, 113, 230, 374, 512
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 2 cut(s) 105, 115
BseDI CCNNGG 5 cut(s) 104, 113, 230, 374, 512
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 24, 357
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 4 cut(s) 112, 475, 478, 491
BshFI GGCC 2 cut(s) 38, 229
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 2 cut(s) 38, 229
Bsp143I GATC 2 cut(s) 168, 308
BspACI CCGC 4 cut(s) 5, 39, 451, 550
BspANI GGCC 2 cut(s) 38, 229
BspCNI CTCAG 2 cut(s) 25, 356
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 509
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 540
BssECI CCNNGG 5 cut(s) 104, 113, 230, 374, 512
BssMI GATC 2 cut(s) 168, 308
BssT1I CCWWGG 2 cut(s) 230, 512
Bst2UI CCWGG 2 cut(s) 105, 115
Bst4CI ACNGT 2 cut(s) 210, 289
Bst6I CTCTTC 1 cut(s) 394
BstDEI CTNAG 3 cut(s) 33, 175, 343
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 392
BstKTI GATC 2 cut(s) 171, 311
BstMBI GATC 2 cut(s) 168, 308
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 2 cut(s) 105, 115
BstSCI CCNGG 2 cut(s) 103, 113
BstSFI CTRYAG 2 cut(s) 337, 505
BstV1I GCAGC 4 cut(s) 112, 475, 478, 491
BstXI CCANNNNNNTGG 2 cut(s) 90, 237
BsuRI GGCC 2 cut(s) 38, 229
BtgI CCRYGG 1 cut(s) 374
BtsCI GGATG 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 69, 171
CaiI CAGNNNCTG 1 cut(s) 350
Csp6I GTAC 1 cut(s) 456
CviAII CATG 2 cut(s) 192, 358
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 3 cut(s) 33, 175, 343
DpnI GATC 2 cut(s) 170, 310
DpnII GATC 2 cut(s) 168, 308
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 230, 512
Eco57I CTGAAG 2 cut(s) 93, 460
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 103, 113
EcoT14I CCWWGG 2 cut(s) 230, 512
EcoT22I ATGCAT 1 cut(s) 197
ErhI CCWWGG 2 cut(s) 230, 512
FaeI CATG 2 cut(s) 195, 361
FaiI YATR 3 cut(s) 193, 326, 359
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 191, 357
FauI CCCGC 1 cut(s) 543
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 5 cut(s) 39, 101, 489, 492, 505
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 5 cut(s) 39, 101, 489, 492, 505
FspBI CTAG 1 cut(s) 432
GluI GCNGC 5 cut(s) 39, 101, 489, 492, 505
GsuI CTGGAG 2 cut(s) 144, 444
HaeIII GGCC 2 cut(s) 38, 229
Hin1II CATG 2 cut(s) 195, 361
HincII GTYRAC 2 cut(s) 292, 425
HindII GTYRAC 2 cut(s) 292, 425
HinfI GANTC 3 cut(s) 118, 347, 470
HpaI GTTAAC 1 cut(s) 292
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 2 cut(s) 292, 425
Hpy188I TCNGA 5 cut(s) 21, 313, 346, 352, 534
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 2 cut(s) 292, 425
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 68, 484
HpyCH4III ACNGT 2 cut(s) 210, 289
HpyCH4V TGCA 5 cut(s) 100, 143, 195, 507, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 33, 175, 343
Hsp92II CATG 2 cut(s) 195, 361
Ksp22I TGATCA 1 cut(s) 168
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 168, 308
LguI GCTCTTC 1 cut(s) 394
LpnPI CCDG 8 cut(s) 58, 90, 100, 117, 127, 174, 316, 474
Lsp1109I GCAGC 4 cut(s) 112, 475, 478, 491
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 280, 482
MalI GATC 2 cut(s) 170, 310
MboI GATC 2 cut(s) 168, 308
MboII GAAGA 2 cut(s) 143, 381
MfeI CAATTG 2 cut(s) 88, 138
MluCI AATT 6 cut(s) 14, 48, 88, 138, 353, 517
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 6 cut(s) 28, 165, 168, 228, 299, 406
Mph1103I ATGCAT 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 3 cut(s) 51, 62, 291
MspA1I CMGCKG 1 cut(s) 504
MspR9I CCNGG 2 cut(s) 105, 115
MunI CAATTG 2 cut(s) 88, 138
MvaI CCWGG 2 cut(s) 105, 115
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 168, 308
NlaIII CATG 2 cut(s) 195, 361
NlaIV GGNNCC 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 118, 347, 470
PkrI GCNGC 5 cut(s) 40, 102, 490, 493, 506
PshBI ATTAAT 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 103, 113
PspGI CCWGG 2 cut(s) 103, 113
PspN4I GGNNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 504
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
SalI GTCGAC 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 3 cut(s) 51, 62, 291
SatI GCNGC 5 cut(s) 39, 101, 489, 492, 505
Sau3AI GATC 2 cut(s) 168, 308
ScaI AGTACT 1 cut(s) 457
ScrFI CCNGG 2 cut(s) 105, 115
SetI ASST 8 cut(s) 127, 157, 176, 344, 389, 424, 506, 527
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 2 cut(s) 337, 505
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 6 cut(s) 14, 48, 88, 138, 353, 517
SsiI CCGC 4 cut(s) 5, 39, 451, 550
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 103, 113
StyI CCWWGG 2 cut(s) 230, 512
TaaI ACNGT 2 cut(s) 210, 289
TaqI TCGA 5 cut(s) 205, 212, 330, 416, 424
TasI AATT 6 cut(s) 14, 48, 88, 138, 353, 517
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 118, 347, 470
Tru1I TTAA 3 cut(s) 51, 62, 291
Tru9I TTAA 3 cut(s) 51, 62, 291
TscAI CASTG 2 cut(s) 76, 171
TseI GCWGC 4 cut(s) 100, 488, 491, 504
TspDTI ATGAA 3 cut(s) 69, 346, 381
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 2 cut(s) 76, 171
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 2 cut(s) 353, 517
XmiI GTMKAC 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.