Rh4DG103700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015817
Physical Location & Seq
Reverse (-)
15939935 .. 15940504
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG103700.1

Sequence Viewer

Length: 570 bp
ATGGATGGGTTTTTGTTCAACAGAAGTCTGTCAAGAAACTCTTCAGTGGGTTGCTCTTCTCGGATTTATTATTGCAGGACCAATGAAGGGGTTCCATTCAATTGGGAAATGCAGCCAGGGACACCCAGGAATCCACCTAAAGAAGAAGCAATTGCACCACTAACACCTCCTCCAGCAGTGATCAGCTTAGGACTACCCAAGCCATGCATTGATGTTCGACAGTCGAAGCCTCCAACAAGGCCAAGGCTTAGGTTTTGGAGAAAAAGCAAGAAAAACAAAGAAAGTAAAAATATTACTATTGTTAACAATGTCGCCGGAGGATCAGATAAGTTTGATGTGTTCGACTTTTGTAGCTCAGATTCTGAATTCATGGCATCAACTTCACCGCGGAACTCAAGCTCTTCATCCTCATCGTCGCTTTCATTCTCGAAAGGTCGATTTTCTAGGGAGTGTTCAAGTTTGCGGAGTACTCCAGCAAGGGATTCCTTCAGTAGTAACGCTGCTGCTCATTTCAGCTGCAGTCCTTGGAATTTTAGCTCTGTTCTGATTAGCATTGCAAGGCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.89

Weight (kDa)

10.05

Isoelectric Point (pI)

66.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25845 AT5G57400 AT5G57400
malus_domestica MD13G1252900.v1.1 MD16G1257400.v1.1
prunus_persica Prupe.1G085200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402361
rosa_laevigata RLG00000009100
rosa_multiflora Rmu_sc0002324.1_g000011
rosa_roxburghii Rroxscaffold_5G00347020
rosa_samantha Rh4AG112200 Rh4BG104800 Rh4CG119000 Rh4DG103700
rosa_wichuraiana Rw4G008990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 388
AciI CCGC 4 cut(s) 386, 388, 463, 562
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 365, 529
AcuI CTGAAG 2 cut(s) 27, 472
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 3 cut(s) 19, 100, 456
AjnI CCWGG 2 cut(s) 115, 125
AluBI AGCT 5 cut(s) 186, 354, 399, 516, 537
AluI AGCT 5 cut(s) 186, 354, 399, 516, 537
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 4 cut(s) 112, 500, 503, 516
ApoI RAATTY 2 cut(s) 365, 529
Asp700I GAANNNNTTC 2 cut(s) 40, 90
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 375
AvaII GGWCC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 124, 487, 490, 503
BciT130I CCWGG 2 cut(s) 117, 127
BclI TGATCA 1 cut(s) 180
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 517
BisI GCNGC 4 cut(s) 113, 501, 504, 517
BlsI GCNGC 4 cut(s) 114, 502, 505, 518
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 117, 127
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 117, 127
BmsI GCATC 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 156, 456
Bpu10I CCTNAGC 2 cut(s) 187, 248
BpuEI CTTGAG 1 cut(s) 379
BsaJI CCNNGG 5 cut(s) 116, 125, 242, 386, 524
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 117, 127
BseDI CCNNGG 5 cut(s) 116, 125, 242, 386, 524
BseGI GGATG 2 cut(s) 10, 404
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 4 cut(s) 124, 487, 490, 503
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 180, 320
BspACI CCGC 4 cut(s) 386, 388, 463, 562
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 368
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 521
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 2 cut(s) 61, 406
BsrDI GCAATG 1 cut(s) 552
BssECI CCNNGG 5 cut(s) 116, 125, 242, 386, 524
BssMI GATC 2 cut(s) 180, 320
BssT1I CCWWGG 2 cut(s) 242, 524
Bst2UI CCWGG 2 cut(s) 117, 127
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 3 cut(s) 46, 61, 406
BstDEI CTNAG 3 cut(s) 187, 248, 355
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 10, 404
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 2 cut(s) 183, 323
BstMBI GATC 2 cut(s) 180, 320
BstNI CCWGG 2 cut(s) 117, 127
BstSCI CCNGG 2 cut(s) 115, 125
BstSFI CTRYAG 1 cut(s) 517
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 124, 487, 490, 503
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 2 cut(s) 10, 404
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 51, 183
CaiI CAGNNNCTG 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 78
Cfr42I CCGCGG 1 cut(s) 389
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 204, 370
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 187, 248, 355
DpnI GATC 2 cut(s) 182, 322
DpnII GATC 2 cut(s) 180, 320
Eam1104I CTCTTC 3 cut(s) 46, 61, 406
EarI CTCTTC 3 cut(s) 46, 61, 406
Eco130I CCWWGG 2 cut(s) 242, 524
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 27, 472
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 115, 125
EcoT14I CCWWGG 2 cut(s) 242, 524
EcoT22I ATGCAT 1 cut(s) 209
ErhI CCWWGG 2 cut(s) 242, 524
FaeI CATG 2 cut(s) 207, 373
FaiI YATR 2 cut(s) 205, 371
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 203, 369
FauI CCCGC 1 cut(s) 555
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 4 cut(s) 113, 501, 504, 517
FokI GGATG 2 cut(s) 17, 391
Fsp4HI GCNGC 4 cut(s) 113, 501, 504, 517
FspBI CTAG 1 cut(s) 444
GluI GCNGC 4 cut(s) 113, 501, 504, 517
GsuI CTGGAG 2 cut(s) 156, 456
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 315
Hin1II CATG 2 cut(s) 207, 373
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 130, 359, 482
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 5 cut(s) 63, 325, 358, 364, 546
Hpy188III TCNNGA 2 cut(s) 33, 427
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 80, 496
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 75, 112, 155, 207, 519, 557
HpyF3I CTNAG 3 cut(s) 187, 248, 355
Hsp92II CATG 2 cut(s) 207, 373
Ksp22I TGATCA 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 304
KspI CCGCGG 1 cut(s) 389
Kzo9I GATC 2 cut(s) 180, 320
LguI GCTCTTC 2 cut(s) 61, 406
LpnPI CCDG 8 cut(s) 61, 102, 112, 129, 139, 186, 328, 486
Lsp1109I GCAGC 4 cut(s) 124, 487, 490, 503
LweI GCATC 1 cut(s) 383
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 494
MalI GATC 2 cut(s) 182, 322
MboI GATC 2 cut(s) 180, 320
MboII GAAGA 4 cut(s) 33, 48, 155, 393
MfeI CAATTG 2 cut(s) 100, 150
MluCI AATT 4 cut(s) 100, 150, 365, 529
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 5 cut(s) 177, 180, 240, 311, 418
Mph1103I ATGCAT 1 cut(s) 209
MroXI GAANNNNTTC 2 cut(s) 40, 90
MseI TTAA 1 cut(s) 303
MspA1I CMGCKG 2 cut(s) 388, 516
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 117, 127
MunI CAATTG 2 cut(s) 100, 150
MvaI CCWGG 2 cut(s) 117, 127
MvnI CGCG 1 cut(s) 388
NdeII GATC 2 cut(s) 180, 320
NlaIII CATG 2 cut(s) 207, 373
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 209
PciSI GCTCTTC 2 cut(s) 61, 406
PdmI GAANNNNTTC 2 cut(s) 40, 90
PfeI GAWTC 3 cut(s) 130, 359, 482
PkrI GCNGC 4 cut(s) 114, 502, 505, 518
Psp6I CCWGG 2 cut(s) 115, 125
PspGI CCWGG 2 cut(s) 115, 125
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 516
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SacII CCGCGG 1 cut(s) 389
SapI GCTCTTC 2 cut(s) 61, 406
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 4 cut(s) 113, 501, 504, 517
Sau3AI GATC 2 cut(s) 180, 320
Sau96I GGNCC 1 cut(s) 78
ScaI AGTACT 1 cut(s) 469
ScrFI CCNGG 2 cut(s) 117, 127
SetI ASST 9 cut(s) 139, 169, 188, 254, 356, 401, 436, 518, 539
SfaNI GCATC 1 cut(s) 383
SfcI CTRYAG 1 cut(s) 517
Sfr303I CCGCGG 1 cut(s) 389
SgrBI CCGCGG 1 cut(s) 389
SinI GGWCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 4 cut(s) 100, 150, 365, 529
SsiI CCGC 4 cut(s) 386, 388, 463, 562
SspI AATATT 1 cut(s) 292
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 115, 125
StyI CCWWGG 2 cut(s) 242, 524
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 5 cut(s) 217, 224, 342, 428, 436
TasI AATT 4 cut(s) 100, 150, 365, 529
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 3 cut(s) 130, 359, 482
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 51, 183
TseI GCWGC 4 cut(s) 112, 500, 503, 516
TspDTI ATGAA 4 cut(s) 99, 358, 393, 411
TspRI CASTG 2 cut(s) 51, 183
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 2 cut(s) 365, 529
XmnI GAANNNNTTC 2 cut(s) 40, 90
XspI CTAG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.