Prupe.1G085200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015817
Physical Location & Seq
Reverse (-)
6336308 .. 6337335
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G085200.1

Sequence Viewer

Length: 639 bp
ATGGATTTCGAGCTTCGAAGGAAGATGGAGATCAAAGGAGTTTCAGTACCTGGAGGGTTTGATCAAGAGCTTTTGTTCAACAGAAACCTATCAAGAAATCCCTCAGTGGGTTGCTCTTCTAGGATTTATTACTGCAGAAGCAGTGAAGGGGTTCCATTCAATTGGGAAATGCAGCCAGGGACACCAAGAAACCCCCCAAAAGAAGAAGCAATTCCACCAATAAGTCCTCCCCCAGCTGCGCTCAGCTTAGGGCTGCCCAAACCCTACATGGATCAACAGCCTAACAAAAGGCCTCCAACAAGTCCACTACCCAGGCTCAAGTTTTGGAGAAAAAGTAAGAAAAACAAACAACGTAAGAACAATGTTCATGACAACGTTAATTATGTGGTTGGGGGGTCAGATAAGTTTGATAAGGTGGAGTTTTGCAGCTCTGACTCTGAGTTCATGGCATCAACTTCGCCTCAGAACTCGAGCCCTTCGTCTTCGTCCTCGTTTTCTTTCTCAAAAGGTCGGCTTTCGAGGCAGTGCTCGAGTTTGCAGAGCACTCAGGCAAGGGAGTCTTTCAGCAGTTCTGGTCATTTCAGCTGCAGTCCTTGGAAGTTTAGCTCTGCCCTTATTAGCATTGCAAGGCGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.72

Weight (kDa)

9.9

Isoelectric Point (pI)

77.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25845 AT5G57400 AT5G57400
malus_domestica MD13G1252900.v1.1 MD16G1257400.v1.1
prunus_persica Prupe.1G085200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402361
rosa_laevigata RLG00000009100
rosa_multiflora Rmu_sc0002324.1_g000011
rosa_roxburghii Rroxscaffold_5G00347020
rosa_samantha Rh4AG112200 Rh4BG104800 Rh4CG119000 Rh4DG103700
rosa_wichuraiana Rw4G008990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 375
AclWI GGATC 1 cut(s) 279
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 79, 160
AjnI CCWGG 3 cut(s) 49, 175, 311
AluBI AGCT 7 cut(s) 13, 70, 236, 246, 429, 585, 606
AluI AGCT 7 cut(s) 13, 70, 236, 246, 429, 585, 606
Alw21I GWGCWC 2 cut(s) 530, 545
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 2 cut(s) 469, 529
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 5 cut(s) 172, 236, 253, 426, 585
Asp700I GAANNNNTTC 2 cut(s) 150, 210
AspLEI GCGC 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 469, 529
BanII GRGCYC 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 530, 545
BbvI GCAGC 5 cut(s) 184, 223, 240, 438, 572
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 438, 472
BciT130I CCWGG 3 cut(s) 51, 177, 313
BclI TGATCA 1 cut(s) 61
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 2 cut(s) 133, 586
BisI GCNGC 5 cut(s) 173, 237, 254, 427, 586
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 5 cut(s) 174, 238, 255, 428, 587
Bme1390I CCNGG 3 cut(s) 51, 177, 313
BmeT110I CYCGRG 2 cut(s) 469, 529
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 3 cut(s) 51, 177, 313
BmsI GCATC 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 247
Bpu1102I GCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 176, 311, 593
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 3 cut(s) 51, 177, 313
BseDI CCNNGG 3 cut(s) 176, 311, 593
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 5 cut(s) 117, 256, 429, 476, 560
BseXI GCAGC 5 cut(s) 184, 223, 240, 438, 572
BseYI CCCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 530, 545
BsiHKCI CYCGRG 2 cut(s) 469, 529
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 292
BsoBI CYCGRG 2 cut(s) 469, 529
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 3 cut(s) 476, 530, 545
Bsp143I GATC 3 cut(s) 30, 61, 271
Bsp1720I GCTNAGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 5 cut(s) 116, 255, 430, 475, 559
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 2 cut(s) 137, 590
BspPI GGATC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 621
BssECI CCNNGG 3 cut(s) 176, 311, 593
BssMI GATC 3 cut(s) 30, 61, 271
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 3 cut(s) 51, 177, 313
Bst6I CTCTTC 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 6 cut(s) 103, 242, 247, 438, 462, 546
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 3 cut(s) 33, 64, 274
BstMBI GATC 3 cut(s) 30, 61, 271
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 3 cut(s) 51, 177, 313
BstSCI CCNGG 3 cut(s) 49, 175, 311
BstSFI CTRYAG 2 cut(s) 133, 586
BstV1I GCAGC 5 cut(s) 184, 223, 240, 438, 572
BstV2I GAAGAC 1 cut(s) 474
BstXI CCANNNNNNTGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 292
BtsI GCAGTG 2 cut(s) 148, 530
BtsIMutI CAGTG 3 cut(s) 111, 148, 530
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 47
CviAII CATG 3 cut(s) 268, 368, 445
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 6 cut(s) 103, 242, 247, 438, 462, 546
DpnI GATC 3 cut(s) 32, 63, 273
DpnII GATC 3 cut(s) 30, 61, 271
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 593
Eco147I AGGCCT 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 476
Eco88I CYCGRG 2 cut(s) 469, 529
EcoRII CCWGG 3 cut(s) 49, 175, 311
EcoT14I CCWWGG 1 cut(s) 593
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 3 cut(s) 271, 371, 448
FaiI YATR 4 cut(s) 269, 369, 384, 446
FalI AAGNNNNNCTT 4 cut(s) 498, 530, 544, 576
FaqI GGGAC 1 cut(s) 193
FatI CATG 3 cut(s) 267, 367, 444
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 5 cut(s) 173, 237, 254, 427, 586
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 5 cut(s) 173, 237, 254, 427, 586
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 240
GluI GCNGC 5 cut(s) 173, 237, 254, 427, 586
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 292
HhaI GCGC 1 cut(s) 241
Hin1II CATG 3 cut(s) 271, 371, 448
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 2 cut(s) 434, 557
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 400, 433, 439, 465
Hpy188III TCNNGA 3 cut(s) 65, 93, 368
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 12, 140, 486
HpyCH4IV ACGT 2 cut(s) 352, 375
HpyCH4V TGCA 6 cut(s) 135, 172, 426, 538, 588, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 6 cut(s) 103, 242, 247, 438, 462, 546
HpySE526I ACGT 2 cut(s) 352, 375
Hsp92II CATG 3 cut(s) 271, 371, 448
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 30, 61, 271
LguI GCTCTTC 1 cut(s) 121
LpnPI CCDG 9 cut(s) 36, 63, 162, 189, 246, 298, 325, 533, 558
Lsp1109I GCAGC 5 cut(s) 184, 223, 240, 438, 572
LweI GCATC 1 cut(s) 458
MaeI CTAG 1 cut(s) 120
MaeII ACGT 2 cut(s) 352, 375
MalI GATC 3 cut(s) 32, 63, 273
MboI GATC 3 cut(s) 30, 61, 271
MboII GAAGA 4 cut(s) 34, 108, 215, 474
MfeI CAATTG 1 cut(s) 160
MhlI GDGCHC 3 cut(s) 476, 530, 545
MluCI AATT 3 cut(s) 160, 210, 379
MlyI GAGTC 2 cut(s) 428, 566
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 7 cut(s) 47, 112, 237, 303, 471, 499, 513
MroXI GAANNNNTTC 2 cut(s) 150, 210
MseI TTAA 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 236, 585
MspR9I CCNGG 3 cut(s) 51, 177, 313
MunI CAATTG 1 cut(s) 160
MvaI CCWGG 3 cut(s) 51, 177, 313
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 3 cut(s) 30, 61, 271
NlaIII CATG 3 cut(s) 271, 371, 448
NlaIV GGNNCC 1 cut(s) 153
NspV TTCGAA 1 cut(s) 16
PaeR7I CTCGAG 2 cut(s) 469, 529
PagI TCATGA 1 cut(s) 367
PceI AGGCCT 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PdmI GAANNNNTTC 2 cut(s) 150, 210
PkrI GCNGC 5 cut(s) 174, 238, 255, 428, 587
PleI GAGTC 2 cut(s) 428, 565
PpsI GAGTC 2 cut(s) 428, 565
Psp1406I AACGTT 1 cut(s) 375
Psp6I CCWGG 3 cut(s) 49, 175, 311
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 3 cut(s) 49, 175, 311
PspN4I GGNNCC 1 cut(s) 153
PspXI VCTCGAGB 2 cut(s) 469, 529
PstI CTGCAG 2 cut(s) 137, 590
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 2 cut(s) 236, 585
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 5 cut(s) 173, 237, 254, 427, 586
Sau3AI GATC 3 cut(s) 30, 61, 271
SchI GAGTC 2 cut(s) 428, 566
ScrFI CCNGG 3 cut(s) 51, 177, 313
SduI GDGCHC 3 cut(s) 476, 530, 545
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 2 cut(s) 133, 586
Sfr274I CTCGAG 2 cut(s) 469, 529
SfuI TTCGAA 1 cut(s) 16
SlaI CTCGAG 2 cut(s) 469, 529
SmlI CTYRAG 3 cut(s) 317, 469, 529
SmoI CTYRAG 3 cut(s) 317, 469, 529
Sse9I AATT 3 cut(s) 160, 210, 379
SseBI AGGCCT 1 cut(s) 292
SspMI CTAG 1 cut(s) 120
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 49, 175, 311
StyI CCWWGG 1 cut(s) 593
TaiI ACGT 2 cut(s) 355, 378
TaqI TCGA 5 cut(s) 9, 16, 470, 518, 530
TasI AATT 3 cut(s) 160, 210, 379
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 3 cut(s) 111, 148, 530
TseI GCWGC 5 cut(s) 172, 236, 253, 426, 585
TspDTI ATGAA 2 cut(s) 356, 433
TspRI CASTG 3 cut(s) 111, 148, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XhoI CTCGAG 2 cut(s) 469, 529
XmnI GAANNNNTTC 2 cut(s) 150, 210
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.