AT5G57400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015817
Physical Location & Seq
Reverse (-)
23261985 .. 23263479
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57400.1

Sequence Viewer

Length: 666 bp
ATGTATAAAATATATATACACATACACATATTTGCACTATACATCGTCTCCATAACTCACGAATCTTCTCTCTTTCTCTTCTCTCAAACGAACATCACCATGAATCAAGAATACGATAACATAACTCCAATACCAAAAGCTTCATTATTGTTAATGGAGAATGATCTATGCAAGAGAGAATCAGAGATCTCAAGAAGCTCATCGGTGGGAGTTTCTTCTAGATTGTTCTATTACTATCATCATCGTAGTCTCAATGAAGGAGTTCCTTTTAAGTGGGAGATGCAGCCGGGAACACCGATCAACCCTCCGCCGGAAGAAAACGTTCGTCCGATTACTCCTCCTCCGGCGTTTCTCAGCCTTGGTTTCCCTGAACCCTCAGTCTCAGTCGTCGGAAATTCTAATAAACATTCTCTATTTCCGGCGAATATTAAGCTTTGGAGATGGAAGAATCTTCGAAAGAGATATTTCTCTAGATGGTCGAGCCAAAGCATGCTTAATAAAGCATCTCTTATATACACATTCGCACGTATGATCCATCAGATAATAATAATGCTCGTGACGGTAATTCAAATTCTTGTGATGACTTGGAGAGATTCGAGGGGTTTAATGACTACAGGTCGAGCTCATCTTCTTCTTCGTCGTCTTCCTCGAAAGATCGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.72

Weight (kDa)

10.04

Isoelectric Point (pI)

71.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25845 AT5G57400 AT5G57400
malus_domestica MD13G1252900.v1.1 MD16G1257400.v1.1
prunus_persica Prupe.1G085200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402361
rosa_laevigata RLG00000009100
rosa_multiflora Rmu_sc0002324.1_g000011
rosa_roxburghii Rroxscaffold_5G00347020
rosa_samantha Rh4AG112200 Rh4BG104800 Rh4CG119000 Rh4DG103700
rosa_wichuraiana Rw4G008990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AclI AACGTT 1 cut(s) 321
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 2 cut(s) 394, 570
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 1 cut(s) 569
AhdI GACNNNNNGTC 1 cut(s) 615
AluBI AGCT 4 cut(s) 140, 198, 433, 623
AluI AGCT 4 cut(s) 140, 198, 433, 623
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 3 cut(s) 52, 254, 385
AlwI GGATC 1 cut(s) 526
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 2 cut(s) 394, 570
Asp700I GAANNNNTTC 2 cut(s) 261, 321
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 454
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 1 cut(s) 295
BccI CCATC 3 cut(s) 435, 468, 543
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 52, 254, 385
BfaI CTAG 2 cut(s) 219, 471
BfmI CTRYAG 1 cut(s) 612
BglII AGATCT 1 cut(s) 186
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 288
BmeRI GACNNNNNGTC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 270, 512
BpiI GAAGAC 1 cut(s) 635
Bpu14I TTCGAA 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 358
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 367, 390, 396
BseRI GAGGAG 2 cut(s) 327, 330
BseXI GCAGC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 4 cut(s) 287, 311, 344, 419
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 3 cut(s) 52, 254, 385
BsmBI CGTCTC 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 5 cut(s) 163, 186, 297, 531, 654
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 3 cut(s) 366, 389, 395
BspPI GGATC 1 cut(s) 526
BspT104I TTCGAA 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 5 cut(s) 163, 186, 297, 531, 654
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 353, 376, 382
BstKTI GATC 5 cut(s) 166, 189, 300, 534, 657
BstMAI GTCTC 3 cut(s) 52, 254, 385
BstMBI GATC 5 cut(s) 163, 186, 297, 531, 654
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 635
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 491
CviAII CATG 2 cut(s) 100, 490
CviJI RGCY 7 cut(s) 140, 198, 286, 357, 433, 483, 623
CviKI_1 RGCY 7 cut(s) 140, 198, 286, 357, 433, 483, 623
DdeI CTNAG 3 cut(s) 353, 376, 382
DpnI GATC 5 cut(s) 165, 188, 299, 533, 656
DpnII GATC 5 cut(s) 163, 186, 297, 531, 654
DriI GACNNNNNGTC 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 103, 493
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FatI CATG 2 cut(s) 99, 489
Fnu4HI GCNGC 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 2 cut(s) 219, 471
GluI GCNGC 1 cut(s) 284
HapII CCGG 4 cut(s) 287, 311, 344, 419
Hin1II CATG 2 cut(s) 103, 493
HindIII AAGCTT 2 cut(s) 138, 431
HinfI GANTC 5 cut(s) 62, 103, 179, 448, 593
HpaII CCGG 4 cut(s) 287, 311, 344, 419
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 184, 330, 392, 540, 659
Hpy188III TCNNGA 6 cut(s) 59, 107, 192, 219, 471, 556
Hpy99I CGWCG 2 cut(s) 392, 642
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4IV ACGT 2 cut(s) 321, 526
HpyCH4V TGCA 3 cut(s) 35, 171, 283
HpyF3I CTNAG 3 cut(s) 353, 376, 382
HpySE526I ACGT 2 cut(s) 321, 526
Hsp92II CATG 2 cut(s) 103, 493
Kzo9I GATC 5 cut(s) 163, 186, 297, 531, 654
LpnPI CCDG 6 cut(s) 300, 324, 357, 381, 432, 600
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 270, 512
MaeI CTAG 2 cut(s) 219, 471
MaeII ACGT 2 cut(s) 321, 526
MaeIII GTNAC 1 cut(s) 556
MalI GATC 5 cut(s) 165, 188, 299, 533, 656
MboI GATC 5 cut(s) 163, 186, 297, 531, 654
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 3 cut(s) 394, 564, 570
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 6 cut(s) 315, 348, 351, 385, 591, 657
MroXI GAANNNNTTC 2 cut(s) 261, 321
MseI TTAA 5 cut(s) 152, 270, 429, 495, 605
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 4 cut(s) 287, 311, 344, 419
MspR9I CCNGG 1 cut(s) 288
NciI CCSGG 1 cut(s) 288
NdeII GATC 5 cut(s) 163, 186, 297, 531, 654
NlaIII CATG 2 cut(s) 103, 493
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 1 cut(s) 493
NspV TTCGAA 1 cut(s) 454
PaeI GCATGC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PdmI GAANNNNTTC 2 cut(s) 261, 321
PfeI GAWTC 5 cut(s) 62, 103, 179, 448, 593
PkrI GCNGC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 527
Psp124BI GAGCTC 1 cut(s) 625
Psp1406I AACGTT 1 cut(s) 321
PsuI RGATCY 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 5 cut(s) 152, 270, 429, 495, 605
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 5 cut(s) 163, 186, 297, 531, 654
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 625
SetI ASST 7 cut(s) 142, 200, 324, 435, 529, 619, 625
SfaNI GCATC 2 cut(s) 270, 512
SfcI CTRYAG 1 cut(s) 612
SfuI TTCGAA 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SphI GCATGC 1 cut(s) 493
Sse9I AATT 3 cut(s) 394, 564, 570
SsiI CCGC 1 cut(s) 308
SspI AATATT 1 cut(s) 427
SspMI CTAG 2 cut(s) 219, 471
SstI GAGCTC 1 cut(s) 625
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 562
TaiI ACGT 2 cut(s) 324, 529
TaqI TCGA 5 cut(s) 454, 479, 596, 619, 649
TasI AATT 3 cut(s) 394, 564, 570
TfiI GAWTC 5 cut(s) 62, 103, 179, 448, 593
Tru1I TTAA 5 cut(s) 152, 270, 429, 495, 605
Tru9I TTAA 5 cut(s) 152, 270, 429, 495, 605
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 116, 132, 270
XapI RAATTY 2 cut(s) 394, 570
XbaI TCTAGA 2 cut(s) 218, 470
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 2 cut(s) 261, 321
XspI CTAG 2 cut(s) 219, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.