Rh4AG112200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0015817
Physical Location & Seq
Reverse (-)
24249056 .. 24249700
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG112200.1

Sequence Viewer

Length: 552 bp
ATGGATGGGTTTTCGTTCAACAGAAGTCTGTCAAGAAACTCTTCAGTGGGTTGCTCTTCTCGGATTTATTATTGCAGGACCACTGAAGGGGTTCCATTCAATTGGGAAATGCAGCCAGGGACACCCAGGAATCCACCTAAAGAAGAAGCAATTGCACCACTAACACCTCCTCCAGCAGTGATCAGCTTAGGACTACCCAAGCCATGCATTGATGTTCGACAGTCGAAGCCTCCAACAAGGCCAAGGCTTAGGTTTTGGAGAAAAAGCAAGAAAAACAAGGAAAGTAAAAATGTCGCCAGAGGATCAGATAAGTTTGATATGTTCGACTTCTGTAGCTCAGATTCTGAATTCATGGCATCAACTTCACCTCGGAACTCAAGCTCTTCATCCTCATCGTCGCTTTCGTTCTCGAAAGGTCGACTTTCTAGGGAGTGTTCAAGTTTGCGGAGTACTCCAGCAAGGGATTCCTTCAGTAGTAACGCTGCTGCTCATTTCAGCTGCAGTCCTTGGAATTTTAGCTCTGTTCTGATTAGCATTGCAAGGCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.29

Weight (kDa)

10.16

Isoelectric Point (pI)

67.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25845 AT5G57400 AT5G57400
malus_domestica MD13G1252900.v1.1 MD16G1257400.v1.1
prunus_persica Prupe.1G085200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402361
rosa_laevigata RLG00000009100
rosa_multiflora Rmu_sc0002324.1_g000011
rosa_roxburghii Rroxscaffold_5G00347020
rosa_samantha Rh4AG112200 Rh4BG104800 Rh4CG119000 Rh4DG103700
rosa_wichuraiana Rw4G008990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 418
AciI CCGC 2 cut(s) 445, 544
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 2 cut(s) 347, 511
AcuI CTGAAG 3 cut(s) 27, 105, 454
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 3 cut(s) 19, 100, 438
AjnI CCWGG 2 cut(s) 115, 125
AluBI AGCT 5 cut(s) 186, 336, 381, 498, 519
AluI AGCT 5 cut(s) 186, 336, 381, 498, 519
AlwI GGATC 1 cut(s) 310
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 4 cut(s) 112, 482, 485, 498
ApoI RAATTY 2 cut(s) 347, 511
Asp700I GAANNNNTTC 2 cut(s) 40, 90
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 357
AvaII GGWCC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 124, 469, 472, 485
BciT130I CCWGG 2 cut(s) 117, 127
BclI TGATCA 1 cut(s) 180
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 2 cut(s) 331, 499
BisI GCNGC 4 cut(s) 113, 483, 486, 499
BlsI GCNGC 4 cut(s) 114, 484, 487, 500
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 117, 127
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 117, 127
BmsI GCATC 1 cut(s) 365
BpmI CTGGAG 2 cut(s) 156, 438
Bpu10I CCTNAGC 2 cut(s) 187, 248
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 5 cut(s) 116, 125, 242, 368, 506
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 2 cut(s) 117, 127
BseDI CCNNGG 5 cut(s) 116, 125, 242, 368, 506
BseGI GGATG 2 cut(s) 10, 386
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 4 cut(s) 124, 469, 472, 485
BshFI GGCC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 180, 302
BspACI CCGC 2 cut(s) 445, 544
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 503
BspPI GGATC 1 cut(s) 310
BspQI GCTCTTC 2 cut(s) 61, 388
BsrDI GCAATG 1 cut(s) 534
BssECI CCNNGG 5 cut(s) 116, 125, 242, 368, 506
BssMI GATC 2 cut(s) 180, 302
BssT1I CCWWGG 2 cut(s) 242, 506
Bst2UI CCWGG 2 cut(s) 117, 127
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 3 cut(s) 46, 61, 388
BstDEI CTNAG 3 cut(s) 187, 248, 337
BstF5I GGATG 2 cut(s) 10, 386
BstKTI GATC 2 cut(s) 183, 305
BstMBI GATC 2 cut(s) 180, 302
BstNI CCWGG 2 cut(s) 117, 127
BstSCI CCNGG 2 cut(s) 115, 125
BstSFI CTRYAG 2 cut(s) 331, 499
BstV1I GCAGC 4 cut(s) 124, 469, 472, 485
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 10, 386
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 51, 81, 183
CaiI CAGNNNCTG 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 450
CviAII CATG 2 cut(s) 204, 352
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 3 cut(s) 187, 248, 337
DpnI GATC 2 cut(s) 182, 304
DpnII GATC 2 cut(s) 180, 302
Eam1104I CTCTTC 3 cut(s) 46, 61, 388
EarI CTCTTC 3 cut(s) 46, 61, 388
Eco130I CCWWGG 2 cut(s) 242, 506
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 3 cut(s) 27, 105, 454
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 115, 125
EcoT14I CCWWGG 2 cut(s) 242, 506
EcoT22I ATGCAT 1 cut(s) 209
ErhI CCWWGG 2 cut(s) 242, 506
FaeI CATG 2 cut(s) 207, 355
FaiI YATR 3 cut(s) 205, 320, 353
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 405, 437
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 203, 351
FauI CCCGC 1 cut(s) 537
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 113, 483, 486, 499
FokI GGATG 2 cut(s) 17, 373
Fsp4HI GCNGC 4 cut(s) 113, 483, 486, 499
FspBI CTAG 1 cut(s) 426
GluI GCNGC 4 cut(s) 113, 483, 486, 499
GsuI CTGGAG 2 cut(s) 156, 438
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 2 cut(s) 207, 355
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HinfI GANTC 3 cut(s) 130, 341, 464
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 6 cut(s) 63, 307, 340, 346, 372, 528
Hpy188III TCNNGA 2 cut(s) 33, 409
Hpy8I GTNNAC 1 cut(s) 419
Hpy99I CGWCG 1 cut(s) 400
HpyAV CCTTC 2 cut(s) 80, 478
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 75, 112, 155, 207, 501, 539
HpyF3I CTNAG 3 cut(s) 187, 248, 337
Hsp92II CATG 2 cut(s) 207, 355
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 2 cut(s) 180, 302
LguI GCTCTTC 2 cut(s) 61, 388
LpnPI CCDG 8 cut(s) 61, 102, 112, 129, 139, 186, 310, 468
Lsp1109I GCAGC 4 cut(s) 124, 469, 472, 485
LweI GCATC 1 cut(s) 365
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 476
MalI GATC 2 cut(s) 182, 304
MboI GATC 2 cut(s) 180, 302
MboII GAAGA 4 cut(s) 33, 48, 155, 375
MfeI CAATTG 2 cut(s) 100, 150
MluCI AATT 4 cut(s) 100, 150, 347, 511
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 6 cut(s) 177, 180, 240, 293, 378, 400
Mph1103I ATGCAT 1 cut(s) 209
MroXI GAANNNNTTC 2 cut(s) 40, 90
MspA1I CMGCKG 1 cut(s) 498
MspR9I CCNGG 2 cut(s) 117, 127
MunI CAATTG 2 cut(s) 100, 150
MvaI CCWGG 2 cut(s) 117, 127
NdeII GATC 2 cut(s) 180, 302
NlaIII CATG 2 cut(s) 207, 355
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 209
PciSI GCTCTTC 2 cut(s) 61, 388
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PdmI GAANNNNTTC 2 cut(s) 40, 90
PfeI GAWTC 3 cut(s) 130, 341, 464
PkrI GCNGC 4 cut(s) 114, 484, 487, 500
Psp6I CCWGG 2 cut(s) 115, 125
PspGI CCWGG 2 cut(s) 115, 125
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 498
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SalI GTCGAC 1 cut(s) 417
SapI GCTCTTC 2 cut(s) 61, 388
SatI GCNGC 4 cut(s) 113, 483, 486, 499
Sau3AI GATC 2 cut(s) 180, 302
Sau96I GGNCC 1 cut(s) 78
ScaI AGTACT 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 117, 127
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 2 cut(s) 331, 499
SinI GGWCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 4 cut(s) 100, 150, 347, 511
SsiI CCGC 2 cut(s) 445, 544
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 115, 125
StyI CCWWGG 2 cut(s) 242, 506
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 5 cut(s) 217, 224, 324, 410, 418
TasI AATT 4 cut(s) 100, 150, 347, 511
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 3 cut(s) 130, 341, 464
TscAI CASTG 3 cut(s) 51, 88, 183
TseI GCWGC 4 cut(s) 112, 482, 485, 498
TspDTI ATGAA 2 cut(s) 340, 375
TspRI CASTG 3 cut(s) 51, 88, 183
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 2 cut(s) 347, 511
XmiI GTMKAC 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 40, 90
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.