AT4G26150

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013070
Physical Location & Seq
Forward (+)
13253084 .. 13255106
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26150.1

Sequence Viewer

Length: 1059 bp
ATGGGTTCCAATTTTCATTACACAATAGATCTCAATGAAGATCAAAACCATCAGCCTTTTTTCGCTTCTCTTGGATCCTCTCTTCATCATCATCTACAACAACAACAACAACAACAACAACATTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTTGATGTCACCGTCTCTTTCCTACTTTCCTTTCTTGATAAACTCTCGCCAAGATCAAGTATATGTTGGGTACAACAATAACACTTTTCATGATGTTCTTGATACCCATATCTCCCAACCTCTCGAGACCAAGAACTTTGTATCTGATGGTGGTTCATCATCAAGTGATCAAATGGTGCCCAAGAAGGAGACACGACTAAAATTGACGATAAAGAAGAAAGATAATCATCAAGACCAAACCGATCTTCCTCAATCCCCAATAAAAGACATGACAGGAACTAACTCGCTCAAGTGGATATCTTCGAAGGTGAGATTAATGAAGAAGAAAAAGGCGATTATTACCACCAGCGACAGCAGCAAACAACACACTAATAACGACCAATCCTCAAACCTAAGCAATTCGGAAAGACAGAATGGTTATAACAACGATTGCGTGATTAGGATTTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAAGTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGGAAGGCCAGGCGGGCCGCTATGGCCACGGCAACCGCAACCGCAGTCTCTGGCGTATCCCCACCGGTCATGAAGAAGAAGATGCAAAACAAGAACAAGATATCAAATGGAGTTTATAAAATCTTATCTCCTTTGCCCCTAAAGGTAAACACGTGTAAGAGAATGATCACACTAGAGGAGACCGCATTAGCCGAGGATTTGGAGACCCAGAGCAACTCCACGATGTTATCATCTTCAGACAATATCTATTTCGATGATCTAGCATTACTGTTGAGCAAAAGTTCAGCTTATCAGCAAGTTTTCCCTCAAGATGAGAAGGAGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

352

Amino Acids

39.34

Weight (kDa)

9.23

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 201 - 235 1.2e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26150 AT5G56860
fragaria_vesca FvH4_1g07390
malus_domestica MD02G1078700.v1.1 MD15G1206700.v1.1
prunus_persica Prupe.7G210100_v2.0.a1
pyrus_communis pycom02g06290 pycom15g18310
rosa_chinensis RchiOBHm_Chr2g0093271
rosa_laevigata RLG00000016385
rosa_multiflora Rmu_sc0003724.1_g000022
rosa_roxburghii Rroxscaffold_2G00148320
rosa_rugosa Rorug02G0034100
rosa_samantha Rh2AG080400 Rh2BG081400 Rh2CG083800 Rh2DG079300
rosa_wichuraiana Rw2G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 576, 807
AccB1I GGYRCC 1 cut(s) 331
AciI CCGC 5 cut(s) 703, 708, 726, 732, 873
AclWI GGATC 2 cut(s) 69, 82
AcoI YGGCCR 1 cut(s) 714
AcuI CTGAAG 1 cut(s) 909
AcvI CACGTG 1 cut(s) 843
AfaI GTAC 1 cut(s) 227
AflIII ACRYGT 2 cut(s) 840, 842
AgeI ACCGGT 1 cut(s) 754
AjnI CCWGG 1 cut(s) 698
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 2 cut(s) 137, 977
AluI AGCT 2 cut(s) 137, 977
Alw26I GTCTC 7 cut(s) 174, 275, 338, 666, 742, 863, 887
AlwI GGATC 2 cut(s) 69, 82
AlwNI CAGNNNCTG 1 cut(s) 740
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 3 cut(s) 696, 705, 714
ApeKI GCWGC 2 cut(s) 510, 1013
AseI ATTAAT 1 cut(s) 470
AsiGI ACCGGT 1 cut(s) 754
AspS9I GGNCC 3 cut(s) 644, 653, 705
AsuHPI GGTGA 3 cut(s) 122, 156, 475
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 644, 653
BaeGI GKGCMC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 716
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 331
BbrPI CACGTG 1 cut(s) 843
BbvI GCAGC 2 cut(s) 522, 1000
BccI CCATC 2 cut(s) 57, 296
BceAI ACGGC 1 cut(s) 735
BciT130I CCWGG 1 cut(s) 700
BciVI GTATCC 1 cut(s) 757
BclI TGATCA 2 cut(s) 322, 855
BcoDI GTCTC 7 cut(s) 174, 275, 338, 666, 742, 863, 887
BfaI CTAG 2 cut(s) 863, 950
BfuI GTATCC 1 cut(s) 757
BglI GCCNNNNNGGC 2 cut(s) 704, 713
BglII AGATCT 1 cut(s) 28
BisI GCNGC 3 cut(s) 511, 708, 1014
BlsI GCNGC 3 cut(s) 512, 709, 1015
Bme1390I CCNGG 1 cut(s) 700
Bme18I GGWCC 2 cut(s) 644, 653
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 644, 653, 705
BmiI GGNNCC 4 cut(s) 7, 76, 333, 655
BmrFI CCNGG 1 cut(s) 700
BmsI GCATC 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 2 cut(s) 428, 981
BsaAI YACGTR 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 381
BsaI GGTCTC 3 cut(s) 275, 863, 887
BsaJI CCNNGG 2 cut(s) 717, 882
BsaWI WCCGGW 1 cut(s) 754
BsaXI ACNNNNNCTCC 4 cut(s) 610, 628, 640, 658
Bse118I RCCGGY 1 cut(s) 754
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 700
BseDI CCNNGG 2 cut(s) 717, 882
BseJI GATNNNNATC 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 618, 881
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 522, 1000
BshFI GGCC 3 cut(s) 698, 707, 716
BshNI GGYRCC 1 cut(s) 331
BshTI ACCGGT 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 639
BsmAI GTCTC 7 cut(s) 174, 275, 338, 666, 742, 863, 887
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 3 cut(s) 698, 707, 716
Bso31I GGTCTC 3 cut(s) 275, 863, 887
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
BspACI CCGC 5 cut(s) 703, 708, 726, 732, 873
BspANI GGCC 3 cut(s) 698, 707, 716
BspHI TCATGA 2 cut(s) 244, 759
BspLI GGNNCC 4 cut(s) 7, 76, 333, 655
BspPI GGATC 2 cut(s) 69, 82
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 3 cut(s) 275, 863, 887
BsrFI RCCGGY 1 cut(s) 754
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 2 cut(s) 717, 882
BssMI GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
Bst2UI CCWGG 1 cut(s) 700
Bst4CI ACNGT 2 cut(s) 168, 960
Bst6I CTCTTC 2 cut(s) 87, 157
BstBAI YACGTR 1 cut(s) 843
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 1 cut(s) 548
BstDSI CCRYGG 1 cut(s) 717
BstKTI GATC 8 cut(s) 31, 43, 77, 211, 325, 400, 858, 949
BstMAI GTCTC 7 cut(s) 174, 275, 338, 666, 742, 863, 887
BstMBI GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
BstMWI GCNNNNNNNGC 3 cut(s) 510, 704, 713
BstNI CCWGG 1 cut(s) 700
BstSCI CCNGG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 522, 1000
BstX2I RGATCY 2 cut(s) 28, 74
BstYI RGATCY 2 cut(s) 28, 74
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 3 cut(s) 698, 707, 716
BtgI CCRYGG 1 cut(s) 717
Cac8I GCNNGC 1 cut(s) 705
CaiI CAGNNNCTG 1 cut(s) 740
CciI TCATGA 2 cut(s) 244, 759
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 3 cut(s) 644, 653, 705
Csp6I GTAC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 754
CviAII CATG 3 cut(s) 245, 424, 760
CviJI RGCY 9 cut(s) 55, 137, 698, 707, 716, 881, 977, 1013, 1031
CviKI_1 RGCY 9 cut(s) 55, 137, 698, 707, 716, 881, 977, 1013, 1031
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 548
DpnI GATC 8 cut(s) 30, 42, 76, 210, 324, 399, 857, 948
DpnII GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 87, 157
EarI CTCTTC 2 cut(s) 87, 157
Eco31I GGTCTC 3 cut(s) 275, 863, 887
Eco32I GATATC 2 cut(s) 453, 792
Eco47I GGWCC 2 cut(s) 644, 653
Eco57I CTGAAG 1 cut(s) 909
Eco72I CACGTG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 698
EcoRV GATATC 2 cut(s) 453, 792
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 3 cut(s) 248, 427, 763
FaiI YATR 9 cut(s) 217, 219, 246, 264, 425, 576, 713, 761, 807
FalI AAGNNNNNCTT 2 cut(s) 961, 993
FaqI GGGAC 1 cut(s) 639
FatI CATG 3 cut(s) 244, 423, 759
FauI CCCGC 1 cut(s) 696
FbaI TGATCA 2 cut(s) 322, 855
Fnu4HI GCNGC 3 cut(s) 511, 708, 1014
Fsp4HI GCNGC 3 cut(s) 511, 708, 1014
FspBI CTAG 2 cut(s) 863, 950
GluI GCNGC 3 cut(s) 511, 708, 1014
HaeIII GGCC 3 cut(s) 698, 707, 716
HapII CCGG 1 cut(s) 755
Hin1II CATG 3 cut(s) 248, 427, 763
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 1 cut(s) 625
HpaII CCGG 1 cut(s) 755
HphI GGTGA 3 cut(s) 122, 156, 475
Hpy166II GTNNAC 2 cut(s) 838, 1051
Hpy188I TCNGA 5 cut(s) 301, 559, 607, 648, 928
Hpy188III TCNNGA 8 cut(s) 190, 245, 254, 278, 280, 386, 760, 998
Hpy8I GTNNAC 2 cut(s) 838, 1051
HpyAV CCTTC 4 cut(s) 334, 454, 688, 1000
HpyCH4III ACNGT 2 cut(s) 168, 960
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 1 cut(s) 775
HpyF10VI GCNNNNNNNGC 3 cut(s) 510, 704, 713
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 1 cut(s) 842
Hsp92II CATG 3 cut(s) 248, 427, 763
Ksp22I TGATCA 2 cut(s) 322, 855
Kzo9I GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
LmnI GCTCC 1 cut(s) 608
LpnPI CCDG 7 cut(s) 414, 514, 685, 712, 726, 768, 911
Lsp1109I GCAGC 2 cut(s) 522, 1000
LweI GCATC 1 cut(s) 762
MaeI CTAG 2 cut(s) 863, 950
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 3 cut(s) 162, 611, 668
MalI GATC 8 cut(s) 30, 42, 76, 210, 324, 399, 857, 948
MboI GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
MflI RGATCY 2 cut(s) 28, 74
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 3 cut(s) 10, 356, 553
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 1 cut(s) 619
Mox20I TGGCCA 1 cut(s) 716
MscI TGGCCA 1 cut(s) 716
MseI TTAA 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 716
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 700
MvaI CCWGG 1 cut(s) 700
MwoI GCNNNNNNNGC 3 cut(s) 510, 704, 713
NdeII GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
NlaIII CATG 3 cut(s) 248, 427, 763
NlaIV GGNNCC 4 cut(s) 7, 76, 333, 655
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 278
PagI TCATGA 2 cut(s) 244, 759
PinAI ACCGGT 1 cut(s) 754
PkrI GCNGC 3 cut(s) 512, 709, 1015
PleI GAGTC 1 cut(s) 619
PmaCI CACGTG 1 cut(s) 843
PmlI CACGTG 1 cut(s) 843
PpsI GAGTC 1 cut(s) 619
Ppu21I YACGTR 1 cut(s) 843
PpuMI RGGWCCY 1 cut(s) 653
PshBI ATTAAT 1 cut(s) 470
PsiI TTATAA 2 cut(s) 576, 807
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 698
PspCI CACGTG 1 cut(s) 843
PspGI CCWGG 1 cut(s) 698
PspN4I GGNNCC 4 cut(s) 7, 76, 333, 655
PspPI GGNCC 3 cut(s) 644, 653, 705
PspPPI RGGWCCY 1 cut(s) 653
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 2 cut(s) 28, 74
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 3 cut(s) 511, 708, 1014
Sau3AI GATC 8 cut(s) 28, 40, 74, 208, 322, 397, 855, 946
Sau96I GGNCC 3 cut(s) 644, 653, 705
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 1 cut(s) 336
SetI ASST 8 cut(s) 139, 277, 465, 549, 655, 837, 845, 979
SfaNI GCATC 1 cut(s) 762
SfiI GGCCNNNNNGGCC 2 cut(s) 704, 713
Sfr274I CTCGAG 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 458
SinI GGWCC 2 cut(s) 644, 653
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 278, 443, 996
SmoI CTYRAG 3 cut(s) 278, 443, 996
Sse9I AATT 3 cut(s) 10, 356, 553
SsiI CCGC 5 cut(s) 703, 708, 726, 732, 873
SspMI CTAG 2 cut(s) 863, 950
StyD4I CCNGG 1 cut(s) 698
TaaI ACNGT 2 cut(s) 168, 960
TaiI ACGT 1 cut(s) 845
TaqI TCGA 3 cut(s) 279, 458, 942
TasI AATT 3 cut(s) 10, 356, 553
TauI GCSGC 1 cut(s) 710
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 2 cut(s) 510, 1013
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 8 cut(s) 5, 51, 74, 116, 233, 300, 488, 776
TspGWI ACGGA 1 cut(s) 1056
VpaK11BI GGWCC 2 cut(s) 644, 653
VspI ATTAAT 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 1024
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 2 cut(s) 863, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.