Prupe.7G210100_v2.0.a1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013070
Physical Location & Seq
Forward (+)
19241890 .. 19243876
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G210100.1

Sequence Viewer

Length: 1008 bp
ATGGCTCCACCTTCCCCTTTTCTTGAGCTCAGTGGAGATGGTGGAGATCATGATCATCAATACCACCATCTCTTCAATCTAGAACCTCAAACTTCTTTCTCTTCTTCCTCTCTTTCCAGCCCCATATTCTTAAACCCATCTCAAGCCCAAGCACCATCCGGTCACTATAGAGAACCACAAAACTTTCAATTCCAACTCCTAGAGGCTGATCATCATAACATTGTCTCGTATGGCGGATCATGTGATTACGACCCTCAAACCCTCGAAAACGAAAGTGGCAGTGGTACTATTCTGAAATTAAGCATTTCCAAGAATGAAGCTGGCAGAAATGGAAATCCAAGTACTGATAAGTGGATGTCTTCAAAGATGAGGATGATGAAGAAGATGACAAACCCGGATCAAACGTCGAGCAGCTGTACATCCAGCGATGATAAACCAGTTGCAATGAAGTTATCAATATCACACAAGTCTGAAGAGCAGAAGCCGCAGCATCCTGACATGATCAGCTGCAGCAACAAATCATCAAACATCATGAACAACAACGTCCCAATTATTAGGGTTTGCTCTGATTGCAACACTACTAAGACACCTCTATGGAGGAGCGGACCAAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGAATTCGGCAAAGGAAGGCAAGGCGGGCCATGGCGGCTGCTGCAGCGGCAGCAAGCGGCACAACCCTGGCTGCTGCGCCATCTATGAAGAGTACTAGTAAGGCGCAACACAAAGACAATAAACCAAGAGGTGCTTCTACTGTCCCGTTCAAGAAAAGGCCGTACAATAAACTCAGCTCAACCCCACCATCAAAAGGCAGACCACCAAAGAAGCTTTGTTTTGAGGATTTCGCAATAAGCATGGACAATAACCATTCATCATCTGCCACTACCACCACCACTACTAGCCTTCAACGAGTTTTCCCACAAGACGAGAAGGAAGCTGCGATCCTGCTCATGGCTCTATCTTGTGGACTTGTTCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

336

Amino Acids

36.37

Weight (kDa)

9.23

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26150 AT5G56860
fragaria_vesca FvH4_1g07390
malus_domestica MD02G1078700.v1.1 MD15G1206700.v1.1
prunus_persica Prupe.7G210100_v2.0.a1
pyrus_communis pycom02g06290 pycom15g18310
rosa_chinensis RchiOBHm_Chr2g0093271
rosa_laevigata RLG00000016385
rosa_multiflora Rmu_sc0003724.1_g000022
rosa_roxburghii Rroxscaffold_2G00148320
rosa_rugosa Rorug02G0034100
rosa_samantha Rh2AG080400 Rh2BG081400 Rh2CG083800 Rh2DG079300
rosa_wichuraiana Rw2G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 603
AciI CCGC 7 cut(s) 234, 485, 603, 664, 674, 686, 696
AclWI GGATC 3 cut(s) 244, 405, 961
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 5 cut(s) 286, 343, 418, 733, 803
AfiI CCNNNNNNNGG 2 cut(s) 833, 976
AgsI TTSAA 5 cut(s) 76, 188, 363, 790, 932
AhlI ACTAGT 1 cut(s) 734
AjnI CCWGG 1 cut(s) 705
AjuI GAANNNNNNNTTGG 2 cut(s) 757, 789
AluBI AGCT 7 cut(s) 28, 320, 414, 507, 816, 853, 962
AluI AGCT 7 cut(s) 28, 320, 414, 507, 816, 853, 962
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 3 cut(s) 244, 405, 961
AoxI GGCC 3 cut(s) 613, 666, 797
ApoI RAATTY 1 cut(s) 642
AspLEI GCGC 2 cut(s) 718, 745
AspS9I GGNCC 3 cut(s) 605, 614, 666
AsuC2I CCSGG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 605
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 6 cut(s) 32, 75, 145, 163, 727, 835
BceAI ACGGC 1 cut(s) 784
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 3 cut(s) 52, 208, 501
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 4 cut(s) 80, 200, 735, 924
BfmI CTRYAG 3 cut(s) 166, 508, 681
BglI GCCNNNNNGGC 1 cut(s) 674
BmcAI AGTACT 2 cut(s) 343, 733
Bme1390I CCNGG 2 cut(s) 395, 707
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 3 cut(s) 605, 614, 666
BmiI GGNNCC 2 cut(s) 6, 616
BmrFI CCNGG 2 cut(s) 395, 707
BmsI GCATC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 44, 126
BpuMI CCSGG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 669, 705
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 833, 976
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 450
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 2 cut(s) 669, 705
BseGI GGATG 5 cut(s) 155, 360, 378, 419, 490
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 833, 976
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 43, 826
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 613
BshFI GGCC 3 cut(s) 615, 668, 799
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 159, 395
BslFI GGGAC 2 cut(s) 530, 767
BslI CCNNNNNNNGG 2 cut(s) 833, 976
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 530, 767
BsnI GGCC 3 cut(s) 615, 668, 799
Bsp1286I GDGCHC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 416
Bsp143I GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 7 cut(s) 234, 485, 603, 664, 674, 686, 696
BspANI GGCC 3 cut(s) 615, 668, 799
BspCNI CTCAG 2 cut(s) 42, 825
BspHI TCATGA 2 cut(s) 49, 531
BspLI GGNNCC 2 cut(s) 6, 616
BspMAI CTGCAG 2 cut(s) 512, 685
BspPI GGATC 3 cut(s) 244, 405, 961
BspQI GCTCTTC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 603
BsrDI GCAATG 1 cut(s) 450
BsrGI TGTACA 1 cut(s) 416
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 2 cut(s) 669, 705
BssMI GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 1 cut(s) 781
Bst6I CTCTTC 4 cut(s) 77, 106, 468, 722
BstAUI TGTACA 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 322, 666, 694
BstDEI CTNAG 3 cut(s) 29, 582, 812
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 5 cut(s) 155, 360, 378, 419, 490
BstHHI GCGC 2 cut(s) 718, 745
BstKTI GATC 7 cut(s) 49, 55, 211, 239, 400, 504, 969
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
BstMWI GCNNNNNNNGC 8 cut(s) 484, 570, 665, 674, 680, 683, 686, 689
BstNI CCWGG 1 cut(s) 707
BstSCI CCNGG 2 cut(s) 393, 705
BstSFI CTRYAG 3 cut(s) 166, 508, 681
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 3 cut(s) 615, 668, 799
BtgI CCRYGG 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 5 cut(s) 155, 360, 378, 419, 490
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 37, 286
Cac8I GCNNGC 3 cut(s) 322, 666, 694
CciI TCATGA 2 cut(s) 49, 531
CfoI GCGC 2 cut(s) 718, 745
Cfr13I GGNCC 3 cut(s) 605, 614, 666
Csp6I GTAC 5 cut(s) 285, 342, 417, 732, 802
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CviAII CATG 8 cut(s) 50, 240, 499, 532, 670, 880, 976, 1001
CviQI GTAC 5 cut(s) 285, 342, 417, 732, 802
DdeI CTNAG 3 cut(s) 29, 582, 812
DpnI GATC 7 cut(s) 48, 54, 210, 238, 399, 503, 968
DpnII GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
Eam1104I CTCTTC 4 cut(s) 77, 106, 468, 722
EarI CTCTTC 4 cut(s) 77, 106, 468, 722
EciI GGCGGA 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 8 cut(s) 53, 243, 502, 535, 673, 883, 979, 1004
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 2 cut(s) 530, 767
FatI CATG 8 cut(s) 49, 239, 498, 531, 669, 879, 975, 1000
FauI CCCGC 1 cut(s) 657
FbaI TGATCA 3 cut(s) 52, 208, 501
FokI GGATG 5 cut(s) 142, 367, 385, 406, 477
FriOI GRGCYC 1 cut(s) 30
FspBI CTAG 4 cut(s) 80, 200, 735, 924
GlaI GCGC 2 cut(s) 717, 744
HaeIII GGCC 3 cut(s) 615, 668, 799
HapII CCGG 2 cut(s) 159, 395
HhaI GCGC 2 cut(s) 718, 745
Hin1II CATG 8 cut(s) 53, 243, 502, 535, 673, 883, 979, 1004
Hin6I GCGC 2 cut(s) 716, 743
HinP1I GCGC 2 cut(s) 716, 743
HindIII AAGCTT 1 cut(s) 851
HpaII CCGG 2 cut(s) 159, 395
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 3 cut(s) 294, 472, 568
Hpy188III TCNNGA 6 cut(s) 23, 50, 80, 494, 532, 790
Hpy8I GTNNAC 1 cut(s) 992
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 21, 649, 938, 949
HpyCH4III ACNGT 1 cut(s) 781
HpyCH4IV ACGT 2 cut(s) 404, 543
HpyCH4V TGCA 5 cut(s) 443, 510, 573, 630, 683
HpyF10VI GCNNNNNNNGC 8 cut(s) 484, 570, 665, 674, 680, 683, 686, 689
HpyF3I CTNAG 3 cut(s) 29, 582, 812
HpySE526I ACGT 2 cut(s) 404, 543
Hsp92II CATG 8 cut(s) 53, 243, 502, 535, 673, 883, 979, 1004
HspAI GCGC 2 cut(s) 716, 743
Ksp22I TGATCA 3 cut(s) 52, 208, 501
Kzo9I GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 10, 600
LweI GCATC 1 cut(s) 499
MaeI CTAG 4 cut(s) 80, 200, 735, 924
MaeII ACGT 2 cut(s) 404, 543
MaeIII GTNAC 2 cut(s) 161, 621
MalI GATC 7 cut(s) 48, 54, 210, 238, 399, 503, 968
MbiI CCGCTC 1 cut(s) 603
MboI GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
MboII GAAGA 8 cut(s) 64, 93, 96, 351, 391, 394, 485, 739
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 188, 296, 549, 642
MmeI TCCRAC 1 cut(s) 217
MseI TTAA 2 cut(s) 131, 299
MslI CAYNNNNRTG 1 cut(s) 592
MspA1I CMGCKG 3 cut(s) 414, 507, 686
MspI CCGG 2 cut(s) 159, 395
MspR9I CCNGG 2 cut(s) 395, 707
MvaI CCWGG 1 cut(s) 707
MwoI GCNNNNNNNGC 8 cut(s) 484, 570, 665, 674, 680, 683, 686, 689
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 669
NdeII GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
NlaIII CATG 8 cut(s) 53, 243, 502, 535, 673, 883, 979, 1004
NlaIV GGNNCC 2 cut(s) 6, 616
NmuCI GTSAC 2 cut(s) 161, 621
PagI TCATGA 2 cut(s) 49, 531
PciSI GCTCTTC 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 6, 616
PspPI GGNCC 3 cut(s) 605, 614, 666
PstI CTGCAG 2 cut(s) 512, 685
PvuII CAGCTG 2 cut(s) 414, 507
RsaI GTAC 5 cut(s) 286, 343, 418, 733, 803
RsaNI GTAC 5 cut(s) 285, 342, 417, 732, 802
RseI CAYNNNNRTG 1 cut(s) 592
SacI GAGCTC 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 131, 299
Sau3AI GATC 7 cut(s) 46, 52, 208, 236, 397, 501, 966
Sau96I GGNCC 3 cut(s) 605, 614, 666
ScaI AGTACT 2 cut(s) 343, 733
ScrFI CCNGG 2 cut(s) 395, 707
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 3 cut(s) 166, 508, 681
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 592
SmlI CTYRAG 2 cut(s) 23, 141
SmoI CTYRAG 2 cut(s) 23, 141
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 4 cut(s) 188, 296, 549, 642
SsiI CCGC 7 cut(s) 234, 485, 603, 664, 674, 686, 696
SspMI CTAG 4 cut(s) 80, 200, 735, 924
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 393, 705
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 1 cut(s) 781
TaiI ACGT 2 cut(s) 407, 546
TaqI TCGA 2 cut(s) 264, 407
TasI AATT 4 cut(s) 188, 296, 549, 642
TatI WGTACW 3 cut(s) 341, 416, 731
TauI GCSGC 4 cut(s) 487, 677, 689, 699
Tru1I TTAA 2 cut(s) 131, 299
Tru9I TTAA 2 cut(s) 131, 299
TscAI CASTG 2 cut(s) 37, 286
TseFI GTSAC 2 cut(s) 161, 621
Tsp45I GTSAC 2 cut(s) 161, 621
TspDTI ATGAA 7 cut(s) 330, 392, 461, 548, 740, 885, 989
TspRI CASTG 2 cut(s) 37, 286
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 1 cut(s) 642
XbaI TCTAGA 1 cut(s) 79
XspI CTAG 4 cut(s) 80, 200, 735, 924
ZrmI AGTACT 2 cut(s) 343, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.