MD15G1206700.v1.1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013070
Physical Location & Seq
Reverse (-)
16410116 .. 16412256
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1206700.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGCTCCTCCACCTTATCATAATCTATCACCTCCTTCCCCTTTTACTCTTGAGCTTAGTGGAGATCATCATGGAGATCATGATCTTCAATACCACCACCTCTTCAACCTTGAGCCTCAAGCTTCCTTTTCTTCTTCTTCTTCTCTTTCTAGTGCCCTTTTCTTAACTCCAGCTCAAGTCCAAGGACGATCCGATGATCATTATAGAGAACCACACCAGTTTCAATTCCAACTCCTAGAGGCTGATCATAACATTGTTCCGCATGGCGGATCACACGATCATGATCATCAAGCCATTGAAAATGAAGGTGGCAGTGGTACTGTTTTGAAATTAAGCATTTCCAAGAATGGAGCTGTCGGAAATGGGAATCCAGGTACTGATCATGAGACTAGTACTAGTTCAGTTAAGTGGATGTCTTCAAAGATGAGGATGATGCGGAAGATGTCGAACCCTGATCAAACATCAAGCAGTTCTACTAGTAGTGATGATAAACCAATTTCGATGAAGTTATCATCACACAAATTTGAAGAGCAGAAGCTGCAGCATCCATCATCGCAATTAGGAGCTGACATGATCAGCTGCAGCAATAATTCATCAAACAACATGAACAACGTCCCAATTATTAGGGTTTGCTCCGATTGCAACACTACTAAGACACCTCTCTGGAGGAGTGGACCCAGAGGCCCTAAGTCACTTTGTAACGCTTGTGGAATTCGGCAAAGGAAGGCAAGGCGTGCGATGGCGGCAGCCGCAGCCGCAGCAAGTGGCACAACCCTGACAGTTGCCGCACCATCTATGAAGAGTAGTAAGGTGCAACCCAAAGCCAATAAATCAAGAGTAAGTTCTACTGTTCCCTTCAAGAAAAGGCCGTACAATAAACTGTCCTCATCCCCATCATCTCGAGGCAAATCAAAGAAGCTTTGTTTTGAGGATTTCACAATCAGCATGAAGAATAACAGTTCATCAGGAAACCCCACTGCCGCCACCACCACTACCGCTCTTCAACGAGTTTTCCCCCAGGACGAGAAGGAAGCTGCAATCCTGCTAATGGCTTTATCTTGTGGACTTGTTCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

360

Amino Acids

38.76

Weight (kDa)

9.35

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 211 - 245 1.3e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26150 AT5G56860
fragaria_vesca FvH4_1g07390
malus_domestica MD02G1078700.v1.1 MD15G1206700.v1.1
prunus_persica Prupe.7G210100_v2.0.a1
pyrus_communis pycom02g06290 pycom15g18310
rosa_chinensis RchiOBHm_Chr2g0093271
rosa_laevigata RLG00000016385
rosa_multiflora Rmu_sc0003724.1_g000022
rosa_roxburghii Rroxscaffold_2G00148320
rosa_rugosa Rorug02G0034100
rosa_samantha Rh2AG080400 Rh2BG081400 Rh2CG083800 Rh2DG079300
rosa_wichuraiana Rw2G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 998
AciI CCGC 9 cut(s) 260, 267, 436, 743, 750, 756, 786, 981, 996
AclWI GGATC 2 cut(s) 183, 277
AcsI RAATTY 2 cut(s) 521, 711
AfaI GTAC 4 cut(s) 319, 376, 394, 872
AfiI CCNNNNNNNGG 2 cut(s) 266, 1048
AgsI TTSAA 9 cut(s) 89, 106, 224, 299, 328, 420, 527, 859, 1004
AhlI ACTAGT 3 cut(s) 389, 395, 476
AjnI CCWGG 2 cut(s) 370, 1017
AluBI AGCT 9 cut(s) 55, 122, 173, 353, 538, 566, 579, 919, 1034
AluI AGCT 9 cut(s) 55, 122, 173, 353, 538, 566, 579, 919, 1034
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 2 cut(s) 183, 277
AlwNI CAGNNNCTG 2 cut(s) 377, 538
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 2 cut(s) 682, 866
ApeKI GCWGC 8 cut(s) 538, 541, 579, 582, 746, 752, 758, 1034
ApoI RAATTY 2 cut(s) 521, 711
AspS9I GGNCC 2 cut(s) 674, 683
AsuHPI GGTGA 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 8 cut(s) 525, 553, 566, 594, 758, 764, 770, 1021
BccI CCATC 4 cut(s) 556, 733, 799, 901
BceAI ACGGC 1 cut(s) 853
BciT130I CCWGG 2 cut(s) 372, 1019
BclI TGATCA 6 cut(s) 196, 244, 283, 379, 454, 573
BcoDI GTCTC 1 cut(s) 380
BcuI ACTAGT 3 cut(s) 389, 395, 476
BfaI CTAG 5 cut(s) 150, 236, 390, 396, 477
BfmI CTRYAG 2 cut(s) 539, 580
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 372, 1019
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 2 cut(s) 674, 683
BmiI GGNNCC 2 cut(s) 6, 676
BmrFI CCNGG 2 cut(s) 372, 1019
BmsI GCATC 2 cut(s) 423, 553
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 153, 685
BpuEI CTTGAG 4 cut(s) 71, 102, 131, 159
BsaBI GATNNNNATC 2 cut(s) 81, 282
BsaJI CCNNGG 2 cut(s) 181, 1017
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 1048
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 2 cut(s) 81, 282
BseBI CCWGG 2 cut(s) 372, 1019
BseDI CCNNGG 2 cut(s) 181, 1017
BseGI GGATG 4 cut(s) 417, 435, 544, 887
BseJI GATNNNNATC 2 cut(s) 81, 282
BseLI CCNNNNNNNGG 2 cut(s) 266, 1048
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 8 cut(s) 525, 553, 566, 594, 758, 764, 770, 1021
BshFI GGCC 2 cut(s) 684, 868
BsiHKCI CYCGRG 1 cut(s) 900
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 266, 1048
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 2 cut(s) 684, 868
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 1 cut(s) 157
BspACI CCGC 9 cut(s) 260, 267, 436, 743, 750, 756, 786, 981, 996
BspANI GGCC 2 cut(s) 684, 868
BspHI TCATGA 3 cut(s) 79, 280, 382
BspLI GGNNCC 2 cut(s) 6, 676
BspMAI CTGCAG 2 cut(s) 543, 584
BspPI GGATC 2 cut(s) 183, 277
BspQI GCTCTTC 2 cut(s) 522, 1005
BsrBI CCGCTC 1 cut(s) 998
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 181, 1017
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 2 cut(s) 372, 1019
Bst4CI ACNGT 5 cut(s) 322, 781, 850, 882, 959
Bst6I CTCTTC 4 cut(s) 107, 522, 794, 1005
BstAPI GCANNNNNTGC 2 cut(s) 538, 734
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 3 cut(s) 56, 651, 687
BstF5I GGATG 4 cut(s) 417, 435, 544, 887
BstMAI GTCTC 1 cut(s) 380
BstMWI GCNNNNNNNGC 8 cut(s) 538, 639, 734, 743, 749, 752, 755, 758
BstNI CCWGG 2 cut(s) 372, 1019
BstSCI CCNGG 2 cut(s) 370, 1017
BstSFI CTRYAG 2 cut(s) 539, 580
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 8 cut(s) 525, 553, 566, 594, 758, 764, 770, 1021
BstV2I GAAGAC 1 cut(s) 408
BsuRI GGCC 2 cut(s) 684, 868
BtgZI GCGATG 2 cut(s) 537, 752
BtsCI GGATG 4 cut(s) 417, 435, 544, 887
BtsI GCAGTG 2 cut(s) 319, 975
BtsIMutI CAGTG 2 cut(s) 319, 975
Cac8I GCNNGC 1 cut(s) 735
CaiI CAGNNNCTG 2 cut(s) 377, 538
CciI TCATGA 3 cut(s) 79, 280, 382
Cfr13I GGNCC 2 cut(s) 674, 683
Csp6I GTAC 4 cut(s) 318, 375, 393, 871
CviAII CATG 9 cut(s) 71, 80, 263, 281, 383, 571, 604, 946, 1073
CviQI GTAC 4 cut(s) 318, 375, 393, 871
DdeI CTNAG 3 cut(s) 56, 651, 687
Eam1104I CTCTTC 4 cut(s) 107, 522, 794, 1005
EarI CTCTTC 4 cut(s) 107, 522, 794, 1005
EciI GGCGGA 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 900
EcoO109I RGGNCCY 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 370, 1017
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 9 cut(s) 74, 83, 266, 284, 386, 574, 607, 949, 1076
FaqI GGGAC 1 cut(s) 599
FatI CATG 9 cut(s) 70, 79, 262, 280, 382, 570, 603, 945, 1072
FbaI TGATCA 6 cut(s) 196, 244, 283, 379, 454, 573
FokI GGATG 4 cut(s) 424, 442, 531, 874
FspBI CTAG 5 cut(s) 150, 236, 390, 396, 477
GsuI CTGGAG 2 cut(s) 153, 685
HaeIII GGCC 2 cut(s) 684, 868
Hin1II CATG 9 cut(s) 74, 83, 266, 284, 386, 574, 607, 949, 1076
HindIII AAGCTT 2 cut(s) 120, 917
HinfI GANTC 1 cut(s) 367
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 674, 1064
Hpy188I TCNGA 3 cut(s) 193, 359, 637
Hpy188III TCNNGA 9 cut(s) 50, 80, 281, 383, 664, 834, 859, 900, 966
Hpy8I GTNNAC 2 cut(s) 674, 1064
HpyAV CCTTC 5 cut(s) 45, 299, 718, 865, 1021
HpyCH4III ACNGT 5 cut(s) 322, 781, 850, 882, 959
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 5 cut(s) 541, 582, 642, 814, 1037
HpyF10VI GCNNNNNNNGC 8 cut(s) 538, 639, 734, 743, 749, 752, 755, 758
HpyF3I CTNAG 3 cut(s) 56, 651, 687
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 9 cut(s) 74, 83, 266, 284, 386, 574, 607, 949, 1076
Ksp22I TGATCA 6 cut(s) 196, 244, 283, 379, 454, 573
LguI GCTCTTC 2 cut(s) 522, 1005
LmnI GCTCC 4 cut(s) 10, 350, 563, 638
Lsp1109I GCAGC 8 cut(s) 525, 553, 566, 594, 758, 764, 770, 1021
LweI GCATC 2 cut(s) 423, 553
MaeI CTAG 5 cut(s) 150, 236, 390, 396, 477
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 690, 698
MbiI CCGCTC 1 cut(s) 998
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 8 cut(s) 224, 329, 495, 521, 557, 589, 618, 711
MmeI TCCRAC 2 cut(s) 253, 337
MseI TTAA 3 cut(s) 164, 332, 405
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 372, 1019
MvaI CCWGG 2 cut(s) 372, 1019
MwoI GCNNNNNNNGC 8 cut(s) 538, 639, 734, 743, 749, 752, 755, 758
NlaIII CATG 9 cut(s) 74, 83, 266, 284, 386, 574, 607, 949, 1076
NlaIV GGNNCC 2 cut(s) 6, 676
NmuCI GTSAC 1 cut(s) 690
PaeR7I CTCGAG 1 cut(s) 900
PagI TCATGA 3 cut(s) 79, 280, 382
PciSI GCTCTTC 2 cut(s) 522, 1005
PfeI GAWTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 370, 1017
PspGI CCWGG 2 cut(s) 370, 1017
PspN4I GGNNCC 2 cut(s) 6, 676
PspPI GGNCC 2 cut(s) 674, 683
PstI CTGCAG 2 cut(s) 543, 584
PstNI CAGNNNCTG 2 cut(s) 377, 538
PvuII CAGCTG 1 cut(s) 579
RsaI GTAC 4 cut(s) 319, 376, 394, 872
RsaNI GTAC 4 cut(s) 318, 375, 393, 871
RseI CAYNNNNRTG 1 cut(s) 279
SapI GCTCTTC 2 cut(s) 522, 1005
SaqAI TTAA 3 cut(s) 164, 332, 405
Sau96I GGNCC 2 cut(s) 674, 683
ScaI AGTACT 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 372, 1019
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 2 cut(s) 423, 553
SfcI CTRYAG 2 cut(s) 539, 580
Sfr274I CTCGAG 1 cut(s) 900
SinI GGWCC 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 900
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 5 cut(s) 50, 110, 117, 174, 900
SmoI CTYRAG 5 cut(s) 50, 110, 117, 174, 900
SpeI ACTAGT 3 cut(s) 389, 395, 476
Sse9I AATT 8 cut(s) 224, 329, 495, 521, 557, 589, 618, 711
SsiI CCGC 9 cut(s) 260, 267, 436, 743, 750, 756, 786, 981, 996
SspMI CTAG 5 cut(s) 150, 236, 390, 396, 477
StyD4I CCNGG 2 cut(s) 370, 1017
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 5 cut(s) 322, 781, 850, 882, 959
TaiI ACGT 1 cut(s) 615
TaqI TCGA 3 cut(s) 446, 500, 901
TasI AATT 8 cut(s) 224, 329, 495, 521, 557, 589, 618, 711
TatI WGTACW 1 cut(s) 392
TauI GCSGC 5 cut(s) 746, 752, 758, 788, 983
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 164, 332, 405
Tru9I TTAA 3 cut(s) 164, 332, 405
TscAI CASTG 2 cut(s) 319, 982
TseFI GTSAC 1 cut(s) 690
TseI GCWGC 8 cut(s) 538, 541, 579, 582, 746, 752, 758, 1034
Tsp45I GTSAC 1 cut(s) 690
TspDTI ATGAA 8 cut(s) 318, 518, 582, 620, 812, 951, 962, 1061
TspRI CASTG 2 cut(s) 319, 982
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 2 cut(s) 521, 711
XhoI CTCGAG 1 cut(s) 900
XspI CTAG 5 cut(s) 150, 236, 390, 396, 477
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.