pycom02g06290

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013070
Physical Location & Seq
Reverse (-)
4349932 .. 4350791
860 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06290.1

Sequence Viewer

Length: 702 bp
ATGGAGCTGTCGGAAGTGGGAATCCAAGTACTGATCGATGAGGTTAATACTAGTTCAGTTAAGTGGATGTCTTCAAAGATGAGGATGATGCGGAAGATGTCCAACACTGATCACACATCAAGCAGTTCTAAGAGTAGTGGTGATAAACCAATTTCCATGAAGTTATCATCACACAAATTTGAAGAGCAGAAGTCGCAGCATCCATCATCGCAATTAGGAGCCGAAATGATCAGCTGCAGCAACAATTCATCAAACAACATGAACAGCATCCCAATTATTAGGGTTTGCTCCGATTGCAGCACAACTAAGACACCTCTCTGGAGGAGTGGACCGAGAGGCCCTAAGTCACTTTGTAACGCTTGTGGAATCCGGCAAAGGAAGGCGAGGCGGGCAATGGCAGCAGCGGCAGCTGCAGCCGCAGCAAGTGGCACAACCCTGACAGTTGCCGCACCATCTATGAAGAGTAGTAAGGTGCAACACAAAGACAATAAATCAAGAGTAAGTTCTACTGTTCCCTTCAAGAAAAGGCCGTACAATAAACTGACCTCATCCCCATCATCTCGAGGCAAATCAAAGAAGCTTTGTTTTGAGGCCCCCACTGCCGCCGCCGCCACTAGTGCTCTTCAACGAGTTTTCCCGCAGGACGAGAGGGAAGCTGCAATCCTGCTAATGGCTTTATCTTGTGGACTTGTTCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

234

Amino Acids

25.04

Weight (kDa)

10.11

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 96 - 130 1.2e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26150 AT5G56860
fragaria_vesca FvH4_1g07390
malus_domestica MD02G1078700.v1.1 MD15G1206700.v1.1
prunus_persica Prupe.7G210100_v2.0.a1
pyrus_communis pycom02g06290 pycom15g18310
rosa_chinensis RchiOBHm_Chr2g0093271
rosa_laevigata RLG00000016385
rosa_multiflora Rmu_sc0003724.1_g000022
rosa_roxburghii Rroxscaffold_2G00148320
rosa_rugosa Rorug02G0034100
rosa_samantha Rh2AG080400 Rh2BG081400 Rh2CG083800 Rh2DG079300
rosa_wichuraiana Rw2G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 91, 388, 404, 417, 447, 603, 606, 609, 638
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 2 cut(s) 30, 533
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 4 cut(s) 75, 182, 520, 626
AhlI ACTAGT 2 cut(s) 50, 614
AluBI AGCT 5 cut(s) 7, 234, 410, 580, 656
AluI AGCT 5 cut(s) 7, 234, 410, 580, 656
Alw21I GWGCWC 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 3 cut(s) 337, 527, 591
ApoI RAATTY 1 cut(s) 176
AspS9I GGNCC 3 cut(s) 329, 338, 592
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 622
BccI CCATC 3 cut(s) 211, 460, 562
BceAI ACGGC 1 cut(s) 514
BclI TGATCA 2 cut(s) 109, 228
BcuI ACTAGT 2 cut(s) 50, 614
BfaI CTAG 2 cut(s) 51, 615
BfmI CTRYAG 2 cut(s) 235, 411
BmcAI AGTACT 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 3 cut(s) 329, 338, 592
BmiI GGNNCC 2 cut(s) 220, 594
BmsI GCATC 3 cut(s) 78, 208, 276
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 36
BseGI GGATG 5 cut(s) 72, 90, 199, 267, 548
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 337
BshFI GGCC 3 cut(s) 339, 529, 593
BshVI ATCGAT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 670
BsnI GGCC 3 cut(s) 339, 529, 593
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 3 cut(s) 33, 109, 228
BspACI CCGC 9 cut(s) 91, 388, 404, 417, 447, 603, 606, 609, 638
BspANI GGCC 3 cut(s) 339, 529, 593
BspDI ATCGAT 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 220, 594
BspMAI CTGCAG 2 cut(s) 239, 415
BspQI GCTCTTC 2 cut(s) 177, 627
BsrDI GCAATG 1 cut(s) 399
BssMI GATC 3 cut(s) 33, 109, 228
Bst4CI ACNGT 2 cut(s) 442, 511
Bst6I CTCTTC 3 cut(s) 177, 455, 627
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 3 cut(s) 129, 306, 342
BstF5I GGATG 5 cut(s) 72, 90, 199, 267, 548
BstKTI GATC 3 cut(s) 36, 112, 231
BstMBI GATC 3 cut(s) 33, 109, 228
BstSFI CTRYAG 2 cut(s) 235, 411
BstV2I GAAGAC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 36
BsuRI GGCC 3 cut(s) 339, 529, 593
BsuTUI ATCGAT 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 5 cut(s) 72, 90, 199, 267, 548
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 105, 597
Cac8I GCNNGC 1 cut(s) 390
Cfr13I GGNCC 3 cut(s) 329, 338, 592
ClaI ATCGAT 1 cut(s) 36
Csp6I GTAC 2 cut(s) 29, 532
CviAII CATG 3 cut(s) 157, 259, 695
CviQI GTAC 2 cut(s) 29, 532
DdeI CTNAG 3 cut(s) 129, 306, 342
DpnI GATC 3 cut(s) 35, 111, 230
DpnII GATC 3 cut(s) 33, 109, 228
Eam1104I CTCTTC 3 cut(s) 177, 455, 627
EarI CTCTTC 3 cut(s) 177, 455, 627
Eco47I GGWCC 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 561
EcoO109I RGGNCCY 2 cut(s) 338, 592
FaeI CATG 3 cut(s) 160, 262, 698
FaiI YATR 4 cut(s) 158, 260, 458, 696
FatI CATG 3 cut(s) 156, 258, 694
FauI CCCGC 2 cut(s) 381, 645
FbaI TGATCA 2 cut(s) 109, 228
FokI GGATG 5 cut(s) 79, 97, 186, 254, 535
FspBI CTAG 2 cut(s) 51, 615
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 3 cut(s) 339, 529, 593
HapII CCGG 1 cut(s) 370
Hin1II CATG 3 cut(s) 160, 262, 698
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 2 cut(s) 21, 366
HpaII CCGG 1 cut(s) 370
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 329, 686
Hpy188I TCNGA 2 cut(s) 13, 292
Hpy188III TCNNGA 4 cut(s) 319, 495, 520, 561
Hpy8I GTNNAC 2 cut(s) 329, 686
HpyAV CCTTC 2 cut(s) 373, 526
HpyCH4III ACNGT 2 cut(s) 442, 511
HpyCH4V TGCA 5 cut(s) 237, 297, 413, 475, 659
HpyF3I CTNAG 3 cut(s) 129, 306, 342
Hsp92II CATG 3 cut(s) 160, 262, 698
Ksp22I TGATCA 2 cut(s) 109, 228
Kzo9I GATC 3 cut(s) 33, 109, 228
LguI GCTCTTC 2 cut(s) 177, 627
LmnI GCTCC 3 cut(s) 4, 218, 293
LpnPI CCDG 5 cut(s) 304, 383, 449, 626, 677
LweI GCATC 3 cut(s) 78, 208, 276
MaeI CTAG 2 cut(s) 51, 615
MaeIII GTNAC 2 cut(s) 345, 353
MalI GATC 3 cut(s) 35, 111, 230
MboI GATC 3 cut(s) 33, 109, 228
MboII GAAGA 5 cut(s) 63, 106, 194, 472, 614
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 5 cut(s) 150, 176, 212, 244, 273
MmeI TCCRAC 1 cut(s) 126
MseI TTAA 2 cut(s) 45, 60
MspA1I CMGCKG 3 cut(s) 234, 404, 410
MspI CCGG 1 cut(s) 370
NdeII GATC 3 cut(s) 33, 109, 228
NlaIII CATG 3 cut(s) 160, 262, 698
NlaIV GGNNCC 2 cut(s) 220, 594
NmuCI GTSAC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 561
PciSI GCTCTTC 2 cut(s) 177, 627
PfeI GAWTC 2 cut(s) 21, 366
PspN4I GGNNCC 2 cut(s) 220, 594
PspPI GGNCC 3 cut(s) 329, 338, 592
PstI CTGCAG 2 cut(s) 239, 415
PvuII CAGCTG 2 cut(s) 234, 410
RsaI GTAC 2 cut(s) 30, 533
RsaNI GTAC 2 cut(s) 29, 532
SapI GCTCTTC 2 cut(s) 177, 627
SaqAI TTAA 2 cut(s) 45, 60
Sau3AI GATC 3 cut(s) 33, 109, 228
Sau96I GGNCC 3 cut(s) 329, 338, 592
ScaI AGTACT 1 cut(s) 30
SduI GDGCHC 1 cut(s) 622
SetI ASST 9 cut(s) 9, 45, 236, 316, 412, 474, 548, 582, 658
SfaNI GCATC 3 cut(s) 78, 208, 276
SfcI CTRYAG 2 cut(s) 235, 411
Sfr274I CTCGAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
SpeI ACTAGT 2 cut(s) 50, 614
Sse9I AATT 5 cut(s) 150, 176, 212, 244, 273
SsiI CCGC 9 cut(s) 91, 388, 404, 417, 447, 603, 606, 609, 638
SspMI CTAG 2 cut(s) 51, 615
TaaI ACNGT 2 cut(s) 442, 511
TaqI TCGA 2 cut(s) 36, 562
TaqII GACCGA 1 cut(s) 346
TasI AATT 5 cut(s) 150, 176, 212, 244, 273
TatI WGTACW 1 cut(s) 28
TauI GCSGC 6 cut(s) 407, 419, 449, 605, 608, 611
TfiI GAWTC 2 cut(s) 21, 366
Tru1I TTAA 2 cut(s) 45, 60
Tru9I TTAA 2 cut(s) 45, 60
TscAI CASTG 2 cut(s) 112, 604
TseFI GTSAC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 5 cut(s) 173, 237, 275, 473, 683
TspRI CASTG 2 cut(s) 112, 604
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 561
XspI CTAG 2 cut(s) 51, 615
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.