MD02G1078700.v1.1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013070
Physical Location & Seq
Reverse (-)
6213084 .. 6214956
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1078700.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGACTCCTCCACCTTATCATAATCTTTCACCTCCTTCCCCTTTTAATCTTGAGCTTAGTGGAGATCATGATCTTCAATACCACCACCTCTTCAATCTTGAACCTCAAACTTCCTTTTCTTCTTCTCTTTCTAGTCCCCTTTTCTTAACTCCAGCTCAAGTCCAAGCACGATCCGATGATCATTATAGAAAACCACAACAGTTTCAATTCCAACTCCTAGAGGCTGATCATAACATTGTTCCGTATGGCGGATCACGCGATCATGATCATCAAGCCATTGAAAATGAAGGTGGCAATGGTACTGTTTTGAAATTAAGCATTTCCAAGAATGGAGCTGACGGAAGTGGGAATCCAAGTACTGACCATGAGGTTAATACTAGTTCAGTTAAGTGGATGTCTTCAAAGATGAGGATGATGTGGAAGATGTCAAACCCTGATCACACATCAAGCAGTTCTAATAGTAGTGGTGATAAACCAATTTCCATGAAGTTATCATCACACAAATTTGAAGAGCAGAAGCCGCAGCATCCATCATCGCAATTAGGAGCCGAAATGATCAGCTGCAGCAACAATTCATCAAACAACATGAGCAGCCTCCCAATTATTAGGGTTTGCTCCGATTGCAGCACTACTAAGACACCTCTCTGGAGGAGTGGACCGAGAGGCCCTAAGTCACTTTGTAACGCTTGTGGAATCCGGCAAAGGAAGGCAAGGCGGGCAATGGCGGCAGCGGCAGCTGCAGCCGCAGCAAGTGGCACAACCCTGACAGTTGCCGCACCATCTATGAAGAGTAGTAAGGTGCAACACAAAGACAATAAATCAAGAGTAAGTTCTACCGTTCCCTTCAAGAAAAGGCCGTACAATAAACTGACCTCATCCCCATCATCTCGAGGCAAATCAAAGAAGCTTTGTTTTGAGGCCCCCACTGCCGCCGCTGCCACTACCGCACTTCAACGAGTTTTCCCGCAGGACGAGAGGGAAGCTGCAATCCTGTTGATGGCTTTATCTTGTGGACTTGTTCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

343

Amino Acids

37.08

Weight (kDa)

9.49

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 205 - 239 2.1e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26150 AT5G56860
fragaria_vesca FvH4_1g07390
malus_domestica MD02G1078700.v1.1 MD15G1206700.v1.1
prunus_persica Prupe.7G210100_v2.0.a1
pyrus_communis pycom02g06290 pycom15g18310
rosa_chinensis RchiOBHm_Chr2g0093271
rosa_laevigata RLG00000016385
rosa_multiflora Rmu_sc0003724.1_g000022
rosa_roxburghii Rroxscaffold_2G00148320
rosa_rugosa Rorug02G0034100
rosa_samantha Rh2AG080400 Rh2BG081400 Rh2CG083800 Rh2DG079300
rosa_wichuraiana Rw2G006660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 258
AclWI GGATC 2 cut(s) 165, 259
AcsI RAATTY 1 cut(s) 503
AfaI GTAC 3 cut(s) 301, 358, 860
AfiI CCNNNNNNNGG 2 cut(s) 248, 997
AhlI ACTAGT 1 cut(s) 377
AluBI AGCT 7 cut(s) 55, 155, 335, 561, 737, 907, 983
AluI AGCT 7 cut(s) 55, 155, 335, 561, 737, 907, 983
AlwI GGATC 2 cut(s) 165, 259
Ama87I CYCGRG 1 cut(s) 888
AoxI GGCC 3 cut(s) 664, 854, 918
ApoI RAATTY 1 cut(s) 503
AspS9I GGNCC 3 cut(s) 656, 665, 919
AsuHPI GGTGA 2 cut(s) 21, 479
AvaI CYCGRG 1 cut(s) 888
AvaII GGWCC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 390
BccI CCATC 4 cut(s) 538, 787, 889, 991
BceAI ACGGC 1 cut(s) 841
BclI TGATCA 5 cut(s) 178, 226, 265, 436, 555
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 3 cut(s) 132, 218, 378
BfmI CTRYAG 2 cut(s) 562, 738
BmcAI AGTACT 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 888
BmgT120I GGNCC 3 cut(s) 656, 665, 919
BmiI GGNNCC 2 cut(s) 547, 921
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 2 cut(s) 135, 667
BpuEI CTTGAG 2 cut(s) 71, 141
BsaBI GATNNNNATC 2 cut(s) 69, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 997
Bse3DI GCAATG 2 cut(s) 301, 726
Bse8I GATNNNNATC 2 cut(s) 69, 264
BseGI GGATG 4 cut(s) 399, 417, 526, 875
BseJI GATNNNNATC 2 cut(s) 69, 264
BseLI CCNNNNNNNGG 2 cut(s) 248, 997
BseMI GCAATG 2 cut(s) 301, 726
BseRI GAGGAG 1 cut(s) 664
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 3 cut(s) 666, 856, 920
BsiHKCI CYCGRG 1 cut(s) 888
BsiSI CCGG 1 cut(s) 697
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 248, 997
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 3 cut(s) 666, 856, 920
BsoBI CYCGRG 1 cut(s) 888
BspANI GGCC 3 cut(s) 666, 856, 920
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 2 cut(s) 67, 262
BspLI GGNNCC 2 cut(s) 547, 921
BspMAI CTGCAG 2 cut(s) 566, 742
BspPI GGATC 2 cut(s) 165, 259
BspQI GCTCTTC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 301, 726
Bst4CI ACNGT 4 cut(s) 201, 304, 769, 838
Bst6I CTCTTC 3 cut(s) 95, 504, 782
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 3 cut(s) 56, 633, 669
BstF5I GGATG 4 cut(s) 399, 417, 526, 875
BstFNI CGCG 1 cut(s) 258
BstSFI CTRYAG 2 cut(s) 562, 738
BstUI CGCG 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 390
BsuRI GGCC 3 cut(s) 666, 856, 920
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 4 cut(s) 399, 417, 526, 875
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 717
CciI TCATGA 2 cut(s) 67, 262
Cfr13I GGNCC 3 cut(s) 656, 665, 919
Csp6I GTAC 3 cut(s) 300, 357, 859
CviAII CATG 6 cut(s) 68, 263, 365, 484, 586, 1022
CviQI GTAC 3 cut(s) 300, 357, 859
DdeI CTNAG 3 cut(s) 56, 633, 669
Eam1104I CTCTTC 3 cut(s) 95, 504, 782
EarI CTCTTC 3 cut(s) 95, 504, 782
EciI GGCGGA 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 656
Eco88I CYCGRG 1 cut(s) 888
EcoO109I RGGNCCY 2 cut(s) 665, 919
FaeI CATG 6 cut(s) 71, 266, 368, 487, 589, 1025
FaqI GGGAC 1 cut(s) 120
FatI CATG 6 cut(s) 67, 262, 364, 483, 585, 1021
FauI CCCGC 2 cut(s) 708, 972
FbaI TGATCA 5 cut(s) 178, 226, 265, 436, 555
FokI GGATG 4 cut(s) 406, 424, 513, 862
FspBI CTAG 3 cut(s) 132, 218, 378
GsuI CTGGAG 2 cut(s) 135, 667
HaeIII GGCC 3 cut(s) 666, 856, 920
HapII CCGG 1 cut(s) 697
Hin1II CATG 6 cut(s) 71, 266, 368, 487, 589, 1025
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 3 cut(s) 4, 349, 693
HpaII CCGG 1 cut(s) 697
HphI GGTGA 2 cut(s) 21, 479
Hpy166II GTNNAC 2 cut(s) 656, 1013
Hpy188I TCNGA 2 cut(s) 175, 619
Hpy188III TCNNGA 8 cut(s) 50, 68, 98, 263, 646, 822, 847, 888
Hpy8I GTNNAC 2 cut(s) 656, 1013
HpyAV CCTTC 4 cut(s) 45, 281, 700, 853
HpyCH4III ACNGT 4 cut(s) 201, 304, 769, 838
HpyCH4V TGCA 5 cut(s) 564, 624, 740, 802, 986
HpyF3I CTNAG 3 cut(s) 56, 633, 669
Hsp92II CATG 6 cut(s) 71, 266, 368, 487, 589, 1025
Ksp22I TGATCA 5 cut(s) 178, 226, 265, 436, 555
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 3 cut(s) 332, 545, 620
LpnPI CCDG 7 cut(s) 165, 447, 631, 710, 776, 953, 1004
LweI GCATC 1 cut(s) 535
MaeI CTAG 3 cut(s) 132, 218, 378
MaeIII GTNAC 2 cut(s) 672, 680
MboII GAAGA 8 cut(s) 65, 82, 111, 114, 390, 433, 521, 799
MluCI AATT 7 cut(s) 206, 311, 477, 503, 539, 571, 600
MmeI TCCRAC 1 cut(s) 235
MseI TTAA 5 cut(s) 45, 146, 314, 372, 387
MspA1I CMGCKG 4 cut(s) 561, 731, 737, 935
MspI CCGG 1 cut(s) 697
MvnI CGCG 1 cut(s) 258
NlaIII CATG 6 cut(s) 71, 266, 368, 487, 589, 1025
NlaIV GGNNCC 2 cut(s) 547, 921
NmuCI GTSAC 1 cut(s) 672
PaeR7I CTCGAG 1 cut(s) 888
PagI TCATGA 2 cut(s) 67, 262
PciSI GCTCTTC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 349, 693
PspN4I GGNNCC 2 cut(s) 547, 921
PspPI GGNCC 3 cut(s) 656, 665, 919
PstI CTGCAG 2 cut(s) 566, 742
PvuII CAGCTG 2 cut(s) 561, 737
RsaI GTAC 3 cut(s) 301, 358, 860
RsaNI GTAC 3 cut(s) 300, 357, 859
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 5 cut(s) 45, 146, 314, 372, 387
Sau96I GGNCC 3 cut(s) 656, 665, 919
ScaI AGTACT 1 cut(s) 358
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 562, 738
Sfr274I CTCGAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 656
SlaI CTCGAG 1 cut(s) 888
SmlI CTYRAG 3 cut(s) 50, 156, 888
SmoI CTYRAG 3 cut(s) 50, 156, 888
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 7 cut(s) 206, 311, 477, 503, 539, 571, 600
SspMI CTAG 3 cut(s) 132, 218, 378
TaaI ACNGT 4 cut(s) 201, 304, 769, 838
TaqI TCGA 1 cut(s) 889
TaqII GACCGA 1 cut(s) 673
TasI AATT 7 cut(s) 206, 311, 477, 503, 539, 571, 600
TatI WGTACW 1 cut(s) 356
TauI GCSGC 7 cut(s) 523, 728, 734, 746, 776, 932, 935
TfiI GAWTC 2 cut(s) 349, 693
Tru1I TTAA 5 cut(s) 45, 146, 314, 372, 387
Tru9I TTAA 5 cut(s) 45, 146, 314, 372, 387
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 672
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 5 cut(s) 300, 500, 564, 800, 1010
TspGWI ACGGA 2 cut(s) 231, 354
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 656
XapI RAATTY 1 cut(s) 503
XhoI CTCGAG 1 cut(s) 888
XspI CTAG 3 cut(s) 132, 218, 378
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.